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Published in: European Radiology 3/2012

01-03-2012 | Computer Applications

A grid overlay framework for analysis of medical images and its application to the measurement of stroke lesions

Authors: Paul A. Armitage, C. S. Rivers, B. Karaszewski, R. G. R. Thomas, G. K. Lymer, Z. Morris, J. M. Wardlaw

Published in: European Radiology | Issue 3/2012

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Abstract

Objectives

To create and evaluate an interactive software tool for measuring imaging data in situations where hand-drawn region-of-interest measurements are unfeasible, for example, when the structure of interest is patchy with ill-defined boundaries.

Methods

An interactive grid overlay software tool was implemented that enabled coding of voxels dependent on their imaging appearance with a series of user-defined classes. The Grid Analysis Tool (GAT) was designed to automatically extract quantitative imaging data, grouping the results by tissue class. Inter- and intra-observer reproducibility was evaluated by six observers of various backgrounds in a study of acute stroke patients.

Results

The software tool enabled a more detailed classification of the stroke lesion than would be possible with a region-of-interest approach. However, inter-observer coefficients of variation (CVs) were relatively high, reaching 70% in “possibly abnormal” tissue and around 15–20% in normal appearing tissues, while intra-observer CVs were no more than 13% in “possibly abnormal” tissue and generally less than 1% in normal-appearing tissues.

Conclusions

The grid-overlay method overcomes some of the limitations of conventional Region Of Interest (ROI) approaches, providing a viable alternative for segmenting patchy lesions with ill-defined boundaries, but care is required to ensure acceptable reproducibility if the method is applied by multiple observers.

Key Points

Computer software developed to overcome limitations of conventional regions of interest measurements
This software is suitable for patchy lesions with ill-defined borders
Allows a more detailed assessment of imaging data
Literature
1.
go back to reference Tofts P (2003) Quantitative MRI of the brain. Measuring changes caused by disease. Wiley, Chichester Tofts P (2003) Quantitative MRI of the brain. Measuring changes caused by disease. Wiley, Chichester
2.
go back to reference Rivers CS, Wardlaw JM, Armitage PA, Bastin ME, Hand PJ, Dennis MS (2007) Acute ischaemic stroke lesion measurement on diffusion-weighted imaging—important considerations in designing acute stroke trials with magnetic resonance imaging. J Stroke Cerebrovasc Dis 16:64–70PubMedCrossRef Rivers CS, Wardlaw JM, Armitage PA, Bastin ME, Hand PJ, Dennis MS (2007) Acute ischaemic stroke lesion measurement on diffusion-weighted imaging—important considerations in designing acute stroke trials with magnetic resonance imaging. J Stroke Cerebrovasc Dis 16:64–70PubMedCrossRef
3.
go back to reference Zhou LQ, Zhu YM, Grimaud J, Hermier M, Rovaris M, Filippi M (2004) A new method for analyzing histograms of brain magnetization transfer ratios: comparison with existing techniques. Am J Neuroradiol 25:1234–1241PubMed Zhou LQ, Zhu YM, Grimaud J, Hermier M, Rovaris M, Filippi M (2004) A new method for analyzing histograms of brain magnetization transfer ratios: comparison with existing techniques. Am J Neuroradiol 25:1234–1241PubMed
4.
go back to reference Jones DK, Cercignani M (2010) Twenty-five pitfalls in the analysis of diffusion MRI data. NMR Biomed 23:803–820PubMedCrossRef Jones DK, Cercignani M (2010) Twenty-five pitfalls in the analysis of diffusion MRI data. NMR Biomed 23:803–820PubMedCrossRef
5.
go back to reference Pal NR, Pal SK (1993) A review on image segmentation techniques. Pattern Recognit 26:1277–1294CrossRef Pal NR, Pal SK (1993) A review on image segmentation techniques. Pattern Recognit 26:1277–1294CrossRef
6.
go back to reference Balafar MA, Ramli AR, Saripan MI, Mashohor S (2010) Review of brain MRI image segmentation methods. Artif Intell Rev 33:261–274CrossRef Balafar MA, Ramli AR, Saripan MI, Mashohor S (2010) Review of brain MRI image segmentation methods. Artif Intell Rev 33:261–274CrossRef
7.
go back to reference Basser PJ, Mattiello J, Le Bihan D (1994) Estimation of the effective self-diffusion tensor from the NMR spin-echo. J Magn Reson B 103:247–254PubMedCrossRef Basser PJ, Mattiello J, Le Bihan D (1994) Estimation of the effective self-diffusion tensor from the NMR spin-echo. J Magn Reson B 103:247–254PubMedCrossRef
8.
go back to reference Basser PJ, Mattiello J, Le Bihan D (1996) Diffusion tensor MR imaging of the human brain. Radiology 201:637–648PubMed Basser PJ, Mattiello J, Le Bihan D (1996) Diffusion tensor MR imaging of the human brain. Radiology 201:637–648PubMed
9.
go back to reference Ostergaard L (2005) Principles of cerebral perfusion imaging by bolus tracking. J Magn Reson Imaging 22:710–717PubMedCrossRef Ostergaard L (2005) Principles of cerebral perfusion imaging by bolus tracking. J Magn Reson Imaging 22:710–717PubMedCrossRef
11.
go back to reference Zhang Y, Brady M, Smith S (2001) Segmentation of brain MR images through a hidden Markov random field model and the expectation maximization algorithm. IEEE Trans Med Imaging 20:45–57PubMedCrossRef Zhang Y, Brady M, Smith S (2001) Segmentation of brain MR images through a hidden Markov random field model and the expectation maximization algorithm. IEEE Trans Med Imaging 20:45–57PubMedCrossRef
12.
go back to reference Karaszewski B, Wardlaw JM, Marshall I, Cvoro V, Wartolowska K, Haga K, Armitage PA, Bastin ME, Dennis MS (2006) Measurement of brain temperature with magnetic resonance spectroscopy in acute ischemic stroke. Ann Neurol 60:438–446PubMedCrossRef Karaszewski B, Wardlaw JM, Marshall I, Cvoro V, Wartolowska K, Haga K, Armitage PA, Bastin ME, Dennis MS (2006) Measurement of brain temperature with magnetic resonance spectroscopy in acute ischemic stroke. Ann Neurol 60:438–446PubMedCrossRef
13.
go back to reference Karaszewski B, Thomas RG, Chappell FM, Armitage PA, Carpenter TK, Lymer GK, Dennis MS, Marshall I, Wardlaw JM (2010) Brain choline concentration. Early quantitative marker of ischemia and infarct expansion? Neurology 75:850–856PubMedCrossRef Karaszewski B, Thomas RG, Chappell FM, Armitage PA, Carpenter TK, Lymer GK, Dennis MS, Marshall I, Wardlaw JM (2010) Brain choline concentration. Early quantitative marker of ischemia and infarct expansion? Neurology 75:850–856PubMedCrossRef
14.
go back to reference Cvoro V, Marshall I, Armitage PA, Bastin ME, Carpenter T, Rivers CS, Dennis MS, Wardlaw JM (2010) MR diffusion and perfusion parameters: relationship to metabolites in acute ischaemic stroke. J Neurol Neurosurg Psychiatry 81:185–191PubMedCrossRef Cvoro V, Marshall I, Armitage PA, Bastin ME, Carpenter T, Rivers CS, Dennis MS, Wardlaw JM (2010) MR diffusion and perfusion parameters: relationship to metabolites in acute ischaemic stroke. J Neurol Neurosurg Psychiatry 81:185–191PubMedCrossRef
15.
go back to reference Jenkinson M, Smith SM (2001) A global optimisation method for robust affine registration of brain images. Med Image Anal 5:143–156PubMedCrossRef Jenkinson M, Smith SM (2001) A global optimisation method for robust affine registration of brain images. Med Image Anal 5:143–156PubMedCrossRef
16.
go back to reference Ostergaard L, Weisskoff RM, Chesler DA, Gyldensted C, Rosen BR (1996) High resolution measurement of cerebral blood flow using intravascular tracer bolus passages. Part 1: Mathematical approach and statistical analysis. Magn Reson Med 36:715–725PubMedCrossRef Ostergaard L, Weisskoff RM, Chesler DA, Gyldensted C, Rosen BR (1996) High resolution measurement of cerebral blood flow using intravascular tracer bolus passages. Part 1: Mathematical approach and statistical analysis. Magn Reson Med 36:715–725PubMedCrossRef
17.
go back to reference Bland JM, Altman DG (1986) Statistical methods for assessing agreement between two methods of clinical measurement. Lancet 1(8476):307–310PubMedCrossRef Bland JM, Altman DG (1986) Statistical methods for assessing agreement between two methods of clinical measurement. Lancet 1(8476):307–310PubMedCrossRef
18.
go back to reference Na DG, Thijs VN, Albers GW, Moseley ME, Marks MP (2004) Diffusion-weighted MR imaging in acute ischemia: value of apparent diffusion coefficient and signal intensity thresholds in predicting tissue at risk and final infarct size. Am J Neuroradiol 25:1331–1336PubMed Na DG, Thijs VN, Albers GW, Moseley ME, Marks MP (2004) Diffusion-weighted MR imaging in acute ischemia: value of apparent diffusion coefficient and signal intensity thresholds in predicting tissue at risk and final infarct size. Am J Neuroradiol 25:1331–1336PubMed
19.
go back to reference Sorensen AG, Copen WA, Ostergaard L, Buonanno FS, Gonzalez RG, Rordorf G, Rosen BR, Schwamm LH, Weisskoff RM, Koroshetz WJ (1999) Hyperacute stroke: simultaneous measurement of relative cerebral blood volume, relative cerebral blood flow, and mean tissue transit time. Radiology 210:519–527PubMed Sorensen AG, Copen WA, Ostergaard L, Buonanno FS, Gonzalez RG, Rordorf G, Rosen BR, Schwamm LH, Weisskoff RM, Koroshetz WJ (1999) Hyperacute stroke: simultaneous measurement of relative cerebral blood volume, relative cerebral blood flow, and mean tissue transit time. Radiology 210:519–527PubMed
20.
go back to reference Munoz Maniega S, Bastin ME, Armitage PA, Farrall AJ, Carpenter TK, Hand PJ, Cvoro V, Rivers CS, Wardlaw JM (2004) Temporal evolution of water diffusion parameters is different in grey and white matter in human ischaemic stroke. J Neurol Neurosurg Psychiatry 75:1714–1718PubMedCrossRef Munoz Maniega S, Bastin ME, Armitage PA, Farrall AJ, Carpenter TK, Hand PJ, Cvoro V, Rivers CS, Wardlaw JM (2004) Temporal evolution of water diffusion parameters is different in grey and white matter in human ischaemic stroke. J Neurol Neurosurg Psychiatry 75:1714–1718PubMedCrossRef
21.
go back to reference Neumann-Haefelin T, Wittsack H-J, Wenserski F, Siebler M, Seitz RJ, Modder U, Freund H-J (1999) Diffusion- and perfusion-weighted MRI. The DWI/PWI mismatch region in acute stroke. Stroke 30:1591–1597PubMedCrossRef Neumann-Haefelin T, Wittsack H-J, Wenserski F, Siebler M, Seitz RJ, Modder U, Freund H-J (1999) Diffusion- and perfusion-weighted MRI. The DWI/PWI mismatch region in acute stroke. Stroke 30:1591–1597PubMedCrossRef
22.
go back to reference Kane I, Sandercock P, Wardlaw JM (2007) Magnetic resonance perfusion diffusion mismatch and thrombolysis in acute ischaemic stroke: a systematic review of the evidence to data. J Neurol Neurosurg Psychiatry 78:485–491PubMedCrossRef Kane I, Sandercock P, Wardlaw JM (2007) Magnetic resonance perfusion diffusion mismatch and thrombolysis in acute ischaemic stroke: a systematic review of the evidence to data. J Neurol Neurosurg Psychiatry 78:485–491PubMedCrossRef
23.
go back to reference Armitage PA, Schwindack C, Bastin ME, Whittle IR (2007) Quantitative assessment of intracranial tumor response to dexamethasone using diffusion, perfusion and permeability magnetic resonance imaging. Magn Reson Imaging 25:303–310PubMedCrossRef Armitage PA, Schwindack C, Bastin ME, Whittle IR (2007) Quantitative assessment of intracranial tumor response to dexamethasone using diffusion, perfusion and permeability magnetic resonance imaging. Magn Reson Imaging 25:303–310PubMedCrossRef
24.
go back to reference de Boer R, Vrooman HA, van der Lijn F, Vernooij MW, Ikram MA, van der Lugt A, Breteler MM, Niessen WJ (2009) White matter lesion extension to automatic brain tissue segmentation on MRI. NeuroImage 45:1151–1161PubMedCrossRef de Boer R, Vrooman HA, van der Lijn F, Vernooij MW, Ikram MA, van der Lugt A, Breteler MM, Niessen WJ (2009) White matter lesion extension to automatic brain tissue segmentation on MRI. NeuroImage 45:1151–1161PubMedCrossRef
25.
go back to reference Hernandez Mdel C, Ferguson KJ, Chappell FM, Wardlaw JM (2010) New multispectral MRI data fusion technique for white matter lesion segmentation: method and comparison with thresholding in FLAIR images. Eur Radiol 20:1684–1691PubMedCrossRef Hernandez Mdel C, Ferguson KJ, Chappell FM, Wardlaw JM (2010) New multispectral MRI data fusion technique for white matter lesion segmentation: method and comparison with thresholding in FLAIR images. Eur Radiol 20:1684–1691PubMedCrossRef
Metadata
Title
A grid overlay framework for analysis of medical images and its application to the measurement of stroke lesions
Authors
Paul A. Armitage
C. S. Rivers
B. Karaszewski
R. G. R. Thomas
G. K. Lymer
Z. Morris
J. M. Wardlaw
Publication date
01-03-2012
Publisher
Springer-Verlag
Published in
European Radiology / Issue 3/2012
Print ISSN: 0938-7994
Electronic ISSN: 1432-1084
DOI
https://doi.org/10.1007/s00330-011-2284-2

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