Skip to main content
Top
Published in: Forensic Science, Medicine and Pathology 4/2015

01-12-2015 | Original Article

The apoptotic thanatotranscriptome associated with the liver of cadavers

Authors: Gulnaz T. Javan, Ismail Can, Sheree J. Finley, Shivani Soni

Published in: Forensic Science, Medicine and Pathology | Issue 4/2015

Login to get access

Abstract

Gene expression investigations are well-established components of ante mortem studies with broad applications ranging from elucidating basic mechanisms responsible for normal physiological processes to discovering therapeutic targets in pathophysiological conditions. However, gene expression studies and their application in the medico-legal field are still in their infancy. Therefore, the present study focuses on RNA using PCR array in the analysis of gene expression associated with tissues taken from actual criminal cases. RNA was extracted from the liver tissues of bodies with PMIs between 6 and 48 h. The results demonstrated that mRNA was stable up to 48 h postmortem. Further, as cell death is an indispensable and necessary part of the biological life cycle, apoptotic gene expression profiles were investigated. The gene expression related to the programmed cell death found in body tissues after death is defined as the apoptotic thanatotranscriptome (thanatos-, Greek for death). On comparison of control and decaying tissues, the results show that with time, pro-apoptotic genes such as caspases are up-regulated and the expression of genes responsible for anti-apoptosis such as BCL2 and BAG3 were down-regulated. Thus, this current work gives a unique perspective of the apoptotic thanatotranscriptome that is affected after death. Up to the present time, gene expression in bodies from criminal cases has not been reported in literature using PCR array techniques. Thus, this thanatotranscriptome study provides insight into postmortem gene activity with potential applications in medico-legal investigations.
Literature
1.
go back to reference Can I, Javan GT, Pozhitkov AE, Noble PA. Distinctive thanatomicrobiome signatures found in the blood and internal organs of humans. J Microbiol Methods. 2014;106:1–7.CrossRefPubMed Can I, Javan GT, Pozhitkov AE, Noble PA. Distinctive thanatomicrobiome signatures found in the blood and internal organs of humans. J Microbiol Methods. 2014;106:1–7.CrossRefPubMed
2.
go back to reference Heinrich M, Matt K, Lutz-Bonengel S, Schmidt U. Successful RNA extraction from various human postmortem tissues. Int J Legal Med. 2007;121:136–42.CrossRefPubMed Heinrich M, Matt K, Lutz-Bonengel S, Schmidt U. Successful RNA extraction from various human postmortem tissues. Int J Legal Med. 2007;121:136–42.CrossRefPubMed
3.
go back to reference Preece P, Cairns NJ. Quantifying mRNA in postmortem human brain: influence of gender, age at death, postmortem interval, brain pH, agonal state and inter-lobe mRNA variance. Mol Brain Res. 2003;118:60–71.CrossRefPubMed Preece P, Cairns NJ. Quantifying mRNA in postmortem human brain: influence of gender, age at death, postmortem interval, brain pH, agonal state and inter-lobe mRNA variance. Mol Brain Res. 2003;118:60–71.CrossRefPubMed
4.
go back to reference Fitzpatrick R, Casey OM, Morris D, Smith T, Powell R, Sreenan JM. Postmortem stability of RNA isolated from bovine reproductive tissues. Biochim Biophys Acta. 2002;1574:10–4.CrossRefPubMed Fitzpatrick R, Casey OM, Morris D, Smith T, Powell R, Sreenan JM. Postmortem stability of RNA isolated from bovine reproductive tissues. Biochim Biophys Acta. 2002;1574:10–4.CrossRefPubMed
6.
go back to reference Botling J, Edlund K, Segersten U, Tahmasebpoor S, Engström M, Sundström M, et al. Impact of thawing on RNA integrity and gene expression analysis in fresh frozen tissue. Diagn Mol Pathol. 2009;18:44–52.CrossRefPubMed Botling J, Edlund K, Segersten U, Tahmasebpoor S, Engström M, Sundström M, et al. Impact of thawing on RNA integrity and gene expression analysis in fresh frozen tissue. Diagn Mol Pathol. 2009;18:44–52.CrossRefPubMed
7.
go back to reference Bauer M, Gramlich I, Polzin S, Patzelt D. Quantification of mRNA degradation as possible indicator of postmortem interval—a pilot study. Leg Med. 2003;5:220–7.CrossRef Bauer M, Gramlich I, Polzin S, Patzelt D. Quantification of mRNA degradation as possible indicator of postmortem interval—a pilot study. Leg Med. 2003;5:220–7.CrossRef
9.
go back to reference Birdsill AC, Walker DG, Lue L, Sue LI, Beach TG. Postmortem interval effect on RNA and gene expression in human brain tissue. Cell Tissue Bank. 2011;12:311–8.PubMedCentralCrossRefPubMed Birdsill AC, Walker DG, Lue L, Sue LI, Beach TG. Postmortem interval effect on RNA and gene expression in human brain tissue. Cell Tissue Bank. 2011;12:311–8.PubMedCentralCrossRefPubMed
10.
go back to reference González-Herrera L, Valenzuela A, Marchal JA, Lorente JA, Villanueva E. Studies on RNA integrity and gene expression in human myocardial tissue, pericardial fluid and blood, and its postmortem stability. Forensic Sci Int. 2013;232:218–28.CrossRefPubMed González-Herrera L, Valenzuela A, Marchal JA, Lorente JA, Villanueva E. Studies on RNA integrity and gene expression in human myocardial tissue, pericardial fluid and blood, and its postmortem stability. Forensic Sci Int. 2013;232:218–28.CrossRefPubMed
11.
go back to reference Finger JM, Mercer JF, Cotton RG, Danks DM. Stability of protein and mRNA in human postmortem liver-analysis by two-dimensional gel electrophoresis. Clin Chim Acta. 1987;170:209–18.CrossRefPubMed Finger JM, Mercer JF, Cotton RG, Danks DM. Stability of protein and mRNA in human postmortem liver-analysis by two-dimensional gel electrophoresis. Clin Chim Acta. 1987;170:209–18.CrossRefPubMed
12.
go back to reference Hansen J, Lesnikova I, Funder AMD, Banner J. DNA and RNA analysis of blood and muscle from bodies with variable postmortem intervals. Forensic Sci Med Pathol. 2014;10:322–8.CrossRefPubMed Hansen J, Lesnikova I, Funder AMD, Banner J. DNA and RNA analysis of blood and muscle from bodies with variable postmortem intervals. Forensic Sci Med Pathol. 2014;10:322–8.CrossRefPubMed
13.
go back to reference Yasojima K, McGeer EG, McGeer PL. High stability of mRNAs postmortem and protocols for their assessment by RT-PCR. Brain Res Protoc. 2001;8:212–8.CrossRef Yasojima K, McGeer EG, McGeer PL. High stability of mRNAs postmortem and protocols for their assessment by RT-PCR. Brain Res Protoc. 2001;8:212–8.CrossRef
14.
go back to reference Anderson S, Howard B, Hobbs GR, Bishop CP. A method for determining the age of a bloodstain. Forensic Sci Int. 2005;148:37–45.CrossRefPubMed Anderson S, Howard B, Hobbs GR, Bishop CP. A method for determining the age of a bloodstain. Forensic Sci Int. 2005;148:37–45.CrossRefPubMed
15.
go back to reference Bauer M, Polzin S, Patzelt D. Quantification of RNA degradation by semi-quantitative duplex and competitive RT-PCR: a possible indicator of the age of bloodstains? Forensic Sci Int. 2003;138:94–103.CrossRefPubMed Bauer M, Polzin S, Patzelt D. Quantification of RNA degradation by semi-quantitative duplex and competitive RT-PCR: a possible indicator of the age of bloodstains? Forensic Sci Int. 2003;138:94–103.CrossRefPubMed
16.
go back to reference Bauer M, Kraus A, Patzelt D. Detection of epithelial cells in dried blood stains by reverse transcriptase–polymerase chain reaction. J Forensic Sci. 1999;44:1232–6.PubMed Bauer M, Kraus A, Patzelt D. Detection of epithelial cells in dried blood stains by reverse transcriptase–polymerase chain reaction. J Forensic Sci. 1999;44:1232–6.PubMed
17.
go back to reference Zubakov D, Kokshoorn M, Kloosterman A, Kayser M. New markers for old stains: stable mRNA markers for blood and saliva identification from up to 16-year-old stains. Int J Legal Med. 2009;123:71–4.CrossRefPubMed Zubakov D, Kokshoorn M, Kloosterman A, Kayser M. New markers for old stains: stable mRNA markers for blood and saliva identification from up to 16-year-old stains. Int J Legal Med. 2009;123:71–4.CrossRefPubMed
18.
go back to reference Setzer M, Juusola J, Ballantyne J. Recovery and stability of RNA in vaginal swabs and blood, semen, and saliva stains. J Forensic Sci. 2008;53:296–305.CrossRefPubMed Setzer M, Juusola J, Ballantyne J. Recovery and stability of RNA in vaginal swabs and blood, semen, and saliva stains. J Forensic Sci. 2008;53:296–305.CrossRefPubMed
19.
go back to reference Sakurada K, Ikegaya H, Fukushima H, Akutsu T, Watanabe K, Yoshino M. Evaluation of mRNA-based approach for identification of saliva and semen. Leg Med. 2009;11:125–8.CrossRef Sakurada K, Ikegaya H, Fukushima H, Akutsu T, Watanabe K, Yoshino M. Evaluation of mRNA-based approach for identification of saliva and semen. Leg Med. 2009;11:125–8.CrossRef
20.
go back to reference Kuliwaba JS, Fazzalari NL, Findlay DM. Stability of RNA isolated from human trabecular bone at post-mortem and surgery. Biochim Biophys Acta. 2005;1740:1–11.CrossRefPubMed Kuliwaba JS, Fazzalari NL, Findlay DM. Stability of RNA isolated from human trabecular bone at post-mortem and surgery. Biochim Biophys Acta. 2005;1740:1–11.CrossRefPubMed
21.
go back to reference van Doorn NL, Wilson AS, Willerslev E, Gilbert MTP. Bone marrow and bone as a source for postmortem RNA. J Forensic Sci. 2011;56:720–5.CrossRefPubMed van Doorn NL, Wilson AS, Willerslev E, Gilbert MTP. Bone marrow and bone as a source for postmortem RNA. J Forensic Sci. 2011;56:720–5.CrossRefPubMed
23.
go back to reference Williams T, Soni S, White J, Can G, Javan GT. Evaluation of DNA degradation using flow cytometry: promising tool for postmortem interval determination. Am J Forensic Med Pathol. 2015;36:104–10.CrossRefPubMed Williams T, Soni S, White J, Can G, Javan GT. Evaluation of DNA degradation using flow cytometry: promising tool for postmortem interval determination. Am J Forensic Med Pathol. 2015;36:104–10.CrossRefPubMed
24.
go back to reference Sampaio-Silva F, Magalhães T, Carvalho F, Dinis-Oliveira RJ, Silvestre R. Profiling of RNA degradation for estimation of post morterm interval. PLoS ONE. 2013;8:e56507.PubMedCentralCrossRefPubMed Sampaio-Silva F, Magalhães T, Carvalho F, Dinis-Oliveira RJ, Silvestre R. Profiling of RNA degradation for estimation of post morterm interval. PLoS ONE. 2013;8:e56507.PubMedCentralCrossRefPubMed
25.
go back to reference Hynd MR, Lewohl JM, Scott HL, Dodd PR. Biochemical and molecular studies using human autopsy brain tissue. J Neurochem. 2003;85:543–62.CrossRefPubMed Hynd MR, Lewohl JM, Scott HL, Dodd PR. Biochemical and molecular studies using human autopsy brain tissue. J Neurochem. 2003;85:543–62.CrossRefPubMed
26.
go back to reference Vennemann M, Koppelkamm A. mRNA profiling in forensic genetics I: possibilities and limitations. Forensic Sci Int. 2010;203:71–5.CrossRefPubMed Vennemann M, Koppelkamm A. mRNA profiling in forensic genetics I: possibilities and limitations. Forensic Sci Int. 2010;203:71–5.CrossRefPubMed
27.
go back to reference Zubakov D, Hanekamp E, Kokshoorn M, van IJcken W, Kayser M. Stable RNA markers for identification of blood and saliva stains revealed from whole genome expression analysis of time-wise degraded samples. Int J Legal Med. 2008;122:135–42.PubMedCentralCrossRefPubMed Zubakov D, Hanekamp E, Kokshoorn M, van IJcken W, Kayser M. Stable RNA markers for identification of blood and saliva stains revealed from whole genome expression analysis of time-wise degraded samples. Int J Legal Med. 2008;122:135–42.PubMedCentralCrossRefPubMed
28.
go back to reference Lee J, Hever A, Willhite D, Zlotnik A, Hevezi P. Effects of RNA degradation on gene expression analysis of human postmortem tissues. FASEB J. 2005;19:1356–8.CrossRefPubMed Lee J, Hever A, Willhite D, Zlotnik A, Hevezi P. Effects of RNA degradation on gene expression analysis of human postmortem tissues. FASEB J. 2005;19:1356–8.CrossRefPubMed
29.
go back to reference Gupta S, Halushka MK, Hilton GM, Arking DE. Postmortem cardiac tissue maintains gene expression profile even after late harvesting. BMC Genom. 2012;13:26.CrossRef Gupta S, Halushka MK, Hilton GM, Arking DE. Postmortem cardiac tissue maintains gene expression profile even after late harvesting. BMC Genom. 2012;13:26.CrossRef
30.
go back to reference Koppelkamm A, Vennemann B, Fracasso T, Lutz-Bonengel S, Schmidt U, Heinrich M. Validation of adequate endogenous reference genes for the normalisation of qPCR gene expression data in human post mortem tissue. Int J Legal Med. 2010;124:371–80.CrossRefPubMed Koppelkamm A, Vennemann B, Fracasso T, Lutz-Bonengel S, Schmidt U, Heinrich M. Validation of adequate endogenous reference genes for the normalisation of qPCR gene expression data in human post mortem tissue. Int J Legal Med. 2010;124:371–80.CrossRefPubMed
31.
go back to reference Koppelkamm A, Vennemann B, Lutz-Bonengel S, Fracasso T, Vennemann M. RNA integrity in post-mortem samples: influencing parameters and implications on RT-qPCR assays. Int J Legal Med. 2011;125:573–80.CrossRefPubMed Koppelkamm A, Vennemann B, Lutz-Bonengel S, Fracasso T, Vennemann M. RNA integrity in post-mortem samples: influencing parameters and implications on RT-qPCR assays. Int J Legal Med. 2011;125:573–80.CrossRefPubMed
32.
go back to reference Durrenberger PF, Fernando S, Kashefi SN, Ferrer I, Hauw JJ, Seilhean D, et al. Effects of antemortem and postmortem variables on human brain mRNA quality: a BrainNet Europe study. J Neuropathol Exp Neurol. 2010;69:70–81.CrossRefPubMed Durrenberger PF, Fernando S, Kashefi SN, Ferrer I, Hauw JJ, Seilhean D, et al. Effects of antemortem and postmortem variables on human brain mRNA quality: a BrainNet Europe study. J Neuropathol Exp Neurol. 2010;69:70–81.CrossRefPubMed
33.
go back to reference Schulze-Osthoff K, Ferrari D, Los M, Wesselborg S, Peter ME. Apoptosis signaling by death receptors. Eur J Biochem. 1998;254:439–59.CrossRefPubMed Schulze-Osthoff K, Ferrari D, Los M, Wesselborg S, Peter ME. Apoptosis signaling by death receptors. Eur J Biochem. 1998;254:439–59.CrossRefPubMed
34.
go back to reference Duprez L, Wirawan E, Berghe TV, Vandenabeele P. Major cell death pathways at a glance. Microbes Infect. 2009;11:1050–62.CrossRefPubMed Duprez L, Wirawan E, Berghe TV, Vandenabeele P. Major cell death pathways at a glance. Microbes Infect. 2009;11:1050–62.CrossRefPubMed
35.
go back to reference Shalini S, Dorstyn L, Dawar S, Kumar S. Old, new and emerging functions of caspases. Cell Death Differ. 2015;22:526–39.CrossRefPubMed Shalini S, Dorstyn L, Dawar S, Kumar S. Old, new and emerging functions of caspases. Cell Death Differ. 2015;22:526–39.CrossRefPubMed
Metadata
Title
The apoptotic thanatotranscriptome associated with the liver of cadavers
Authors
Gulnaz T. Javan
Ismail Can
Sheree J. Finley
Shivani Soni
Publication date
01-12-2015
Publisher
Springer US
Published in
Forensic Science, Medicine and Pathology / Issue 4/2015
Print ISSN: 1547-769X
Electronic ISSN: 1556-2891
DOI
https://doi.org/10.1007/s12024-015-9704-6

Other articles of this Issue 4/2015

Forensic Science, Medicine and Pathology 4/2015 Go to the issue