Skip to main content
Top
Published in: Gastric Cancer 3/2014

01-07-2014 | Original Article

High-throughput mutation profiling identifies novel molecular dysregulation in high-grade intraepithelial neoplasia and early gastric cancers

Authors: Matteo Fassan, Michele Simbolo, Emilio Bria, Andrea Mafficini, Sara Pilotto, Paola Capelli, Maria Bencivenga, Sara Pecori, Claudio Luchini, Diogo Neves, Giona Turri, Caterina Vicentini, Licia Montagna, Anna Tomezzoli, Giampaolo Tortora, Marco Chilosi, Giovanni De Manzoni, Aldo Scarpa

Published in: Gastric Cancer | Issue 3/2014

Login to get access

Abstract

Background

There is still no widely accepted molecular marker available to distinguish between gastric high-grade intraepithelial neoplasia (HG-IEN) and invasive early gastric cancer (EGC).

Methods

HG-IEN and EGC lesions coexisting in the same patient were manually microdissected from a series of 15 gastrectomies for EGC; 40 ng DNA was used for multiplex PCR amplification using the Ion AmpliSeq Cancer Panel, which explores the mutational status of hotspot regions in 50 cancer-associated genes.

Results

Of the 15 EGCs, 12 presented at least one somatic mutation among the 50 investigated genes, and 6 of these showed multiple driver gene somatic mutations. TP53 mutations were observed in 9 cases; APC mutations were identified in 3 cases; and ATM and STK11 were mutated in 2 cases. Seven HG-IEN lesions shared an identical mutational profile with the EGC from the same patient; 13 mutations observed in APC, ATM, FGFR3, PIK3CA, RB1, STK11, and TP53 genes were shared by both HG-IEN and ECG lesions. CDKN2A, IDH2, MET, and RET mutations were observed only in EGC. TP53 deregulation was further investigated in an independent series of 75 biopsies corresponding to all the phenotypic lesions occurring in the EGC carcinogenetic cascade. p53 nuclear immunoreaction progressively increased along with the dedifferentiation of the lesions (P < 0.001). Overall, 18 of 20 p53-positive lesions showed a TP53 mutated gene.

Discussion

Our results support the molecular similarity between HG-IEN and EGC and suggest a relevant role for TP53 in the progression to the invasive phenotype and the use of immunohistochemistry as a surrogate to detect TP53 gene mutations.
Literature
1.
2.
go back to reference Correa P. Gastric cancer: overview. Gastroenterol Clin N Am. 2013;42:211–7.CrossRef Correa P. Gastric cancer: overview. Gastroenterol Clin N Am. 2013;42:211–7.CrossRef
3.
go back to reference Rugge M, Pennelli G, Pilozzi E, Fassan M, Ingravallo G, Russo VM, et al. Gastritis: the histology report. Dig Liver Dis. 2011;43(suppl 4):S373–84.PubMedCrossRef Rugge M, Pennelli G, Pilozzi E, Fassan M, Ingravallo G, Russo VM, et al. Gastritis: the histology report. Dig Liver Dis. 2011;43(suppl 4):S373–84.PubMedCrossRef
4.
go back to reference Fassan M, Baffa R, Kiss A. Advanced precancerous lesions within the GI tract: the molecular background. Best Pract Res Clin Gastroenterol. 2013;27:159–69.PubMedCrossRef Fassan M, Baffa R, Kiss A. Advanced precancerous lesions within the GI tract: the molecular background. Best Pract Res Clin Gastroenterol. 2013;27:159–69.PubMedCrossRef
6.
go back to reference Rugge M, Fassan M, Graham DY. Clinical guidelines: secondary prevention of gastric cancer. Nat Rev Gastroenterol Hepatol. 2012;9:128–9.PubMedCrossRef Rugge M, Fassan M, Graham DY. Clinical guidelines: secondary prevention of gastric cancer. Nat Rev Gastroenterol Hepatol. 2012;9:128–9.PubMedCrossRef
7.
go back to reference Rugge M, Capelle LG, Cappellesso R, Nitti D, Kuipers EJ. Precancerous lesions in the stomach: from biology to clinical patient management. Best Pract Res Clin Gastroenterol. 2013;27:205–23.PubMedCrossRef Rugge M, Capelle LG, Cappellesso R, Nitti D, Kuipers EJ. Precancerous lesions in the stomach: from biology to clinical patient management. Best Pract Res Clin Gastroenterol. 2013;27:205–23.PubMedCrossRef
8.
go back to reference Luchini C, Capelli P, Fassan M, Simbolo M, Mafficini A, Pedica F, et al. Next-generation histopathological diagnosis: a lesson from a hepatic carcinosarcoma. J Clin Oncol. 2013 (in press). Luchini C, Capelli P, Fassan M, Simbolo M, Mafficini A, Pedica F, et al. Next-generation histopathological diagnosis: a lesson from a hepatic carcinosarcoma. J Clin Oncol. 2013 (in press).
9.
go back to reference Scarpa A, Sikora K, Fassan M, Rachiglio AM, Cappellesso R, Antonello D, et al. Molecular typing of lung adenocarcinoma on cytological samples using a multigene next generation sequencing panel. PLoS ONE 2013;8:e80478.PubMedCentralPubMedCrossRef Scarpa A, Sikora K, Fassan M, Rachiglio AM, Cappellesso R, Antonello D, et al. Molecular typing of lung adenocarcinoma on cytological samples using a multigene next generation sequencing panel. PLoS ONE 2013;8:e80478.PubMedCentralPubMedCrossRef
10.
go back to reference Rugge M, de Boni M, Pennelli G, de Bona M, Giacomelli L, Fassan M, et al. Gastritis OLGA-staging and gastric cancer risk: a twelve-year clinicopathological follow-up study. Aliment Pharmacol Ther. 2010;31:1104–11.PubMed Rugge M, de Boni M, Pennelli G, de Bona M, Giacomelli L, Fassan M, et al. Gastritis OLGA-staging and gastric cancer risk: a twelve-year clinicopathological follow-up study. Aliment Pharmacol Ther. 2010;31:1104–11.PubMed
11.
go back to reference Lauwers GY, Carneiro F, Graham DY, et al. Gastric carcinoma. In: Bosman FT, Carneiro F, Hruban RH, Theise ND, editors. WHO classification of tumours of the digestive system, vol 98. 4th ed. Lyon: International Agency for Research on Cancer (IARC). 2010; p 48–68. Lauwers GY, Carneiro F, Graham DY, et al. Gastric carcinoma. In: Bosman FT, Carneiro F, Hruban RH, Theise ND, editors. WHO classification of tumours of the digestive system, vol 98. 4th ed. Lyon: International Agency for Research on Cancer (IARC). 2010; p 48–68.
12.
go back to reference Simbolo M, Gottardi M, Corbo V, Fassan M, Mafficini A, Malpeli G, et al. A standardized workflow for the qualification of DNA preparations. PLoS ONE. 2013;8:e62692.PubMedCentralPubMedCrossRef Simbolo M, Gottardi M, Corbo V, Fassan M, Mafficini A, Malpeli G, et al. A standardized workflow for the qualification of DNA preparations. PLoS ONE. 2013;8:e62692.PubMedCentralPubMedCrossRef
13.
go back to reference Zamo A, Bertolaso A, van Raaij AW, Mancini F, Scardoni M, Montresor M, et al. Application of microfluidic technology to the BIOMED-2 protocol for detection of B-cell clonality. J Mol Diagn. 2012;14:30–7.PubMedCrossRef Zamo A, Bertolaso A, van Raaij AW, Mancini F, Scardoni M, Montresor M, et al. Application of microfluidic technology to the BIOMED-2 protocol for detection of B-cell clonality. J Mol Diagn. 2012;14:30–7.PubMedCrossRef
14.
go back to reference Manfé V, Biskup E, Johansen P, Kamstrup MR, Krejsgaard TF, Morling N, et al. MDM2 inhibitor nutlin-3a induces apoptosis and senescence in cutaneous T-cell lymphoma: role of p53. J Invest Dermatol. 2012;132:1487–96.PubMedCrossRef Manfé V, Biskup E, Johansen P, Kamstrup MR, Krejsgaard TF, Morling N, et al. MDM2 inhibitor nutlin-3a induces apoptosis and senescence in cutaneous T-cell lymphoma: role of p53. J Invest Dermatol. 2012;132:1487–96.PubMedCrossRef
15.
go back to reference Bria E, De Manzoni G, Beghelli S, Tomezzoli A, Barbi S, Di Gregorio C, et al. A clinical-biological risk stratification model for resected gastric cancer: prognostic impact of Her2, Fhit, and APC expression status. Ann Oncol. 2013;24:693–701.PubMedCrossRef Bria E, De Manzoni G, Beghelli S, Tomezzoli A, Barbi S, Di Gregorio C, et al. A clinical-biological risk stratification model for resected gastric cancer: prognostic impact of Her2, Fhit, and APC expression status. Ann Oncol. 2013;24:693–701.PubMedCrossRef
16.
go back to reference Zang ZJ, Cutcutache I, Poon SL, Zhang SL, McPherson JR, Tao J, et al. Exome sequencing of gastric adenocarcinoma identifies recurrent somatic mutations in cell adhesion and chromatin remodeling genes. Nat Genet. 2012;44:570–4.PubMedCrossRef Zang ZJ, Cutcutache I, Poon SL, Zhang SL, McPherson JR, Tao J, et al. Exome sequencing of gastric adenocarcinoma identifies recurrent somatic mutations in cell adhesion and chromatin remodeling genes. Nat Genet. 2012;44:570–4.PubMedCrossRef
17.
go back to reference Cassaro M, Rugge M, Tieppo C, Giacomelli L, Velo D, Nitti D, et al. Indefinite for non-invasive neoplasia lesions in gastric intestinal metaplasia: the immunophenotype. J Clin Pathol. 2007;60:615–21.PubMedCrossRef Cassaro M, Rugge M, Tieppo C, Giacomelli L, Velo D, Nitti D, et al. Indefinite for non-invasive neoplasia lesions in gastric intestinal metaplasia: the immunophenotype. J Clin Pathol. 2007;60:615–21.PubMedCrossRef
18.
go back to reference Dong B, Xie YQ, Chen K, Wang T, Tang W, You WC, et al. Differences in biological features of gastric dysplasia, indefinite dysplasia, reactive hyperplasia and discriminant analysis of these lesions. World J Gastroenterol. 2005;11:3595–600.PubMed Dong B, Xie YQ, Chen K, Wang T, Tang W, You WC, et al. Differences in biological features of gastric dysplasia, indefinite dysplasia, reactive hyperplasia and discriminant analysis of these lesions. World J Gastroenterol. 2005;11:3595–600.PubMed
19.
go back to reference Anagnostopoulos GK, Stefanou D, Arkoumani E, Karagiannis J, Paraskeva K, Chalkley L, Habilomati E, et al. Immunohistochemical expression of cell-cycle proteins in gastric precancerous lesions. J Gastroenterol Hepatol. 2008;23:626–31.PubMedCrossRef Anagnostopoulos GK, Stefanou D, Arkoumani E, Karagiannis J, Paraskeva K, Chalkley L, Habilomati E, et al. Immunohistochemical expression of cell-cycle proteins in gastric precancerous lesions. J Gastroenterol Hepatol. 2008;23:626–31.PubMedCrossRef
20.
go back to reference Fassan M, Mastracci L, Grillo F, Zagonel V, Bruno S, Battaglia G, et al. Early HER2 dysregulation in gastric and oesophageal carcinogenesis. Histopathology (Oxf). 2012;61:769–76.CrossRef Fassan M, Mastracci L, Grillo F, Zagonel V, Bruno S, Battaglia G, et al. Early HER2 dysregulation in gastric and oesophageal carcinogenesis. Histopathology (Oxf). 2012;61:769–76.CrossRef
21.
go back to reference Lee J, van Hummelen P, Go C, Palescandolo E, Jang J, Park HY, et al. High-throughput mutation profiling identifies frequent somatic mutations in advanced gastric adenocarcinoma. PLoS ONE. 2012;7:e38892.PubMedCentralPubMedCrossRef Lee J, van Hummelen P, Go C, Palescandolo E, Jang J, Park HY, et al. High-throughput mutation profiling identifies frequent somatic mutations in advanced gastric adenocarcinoma. PLoS ONE. 2012;7:e38892.PubMedCentralPubMedCrossRef
22.
go back to reference Yajima H, Isomoto H, Nishioka H, Yamaguchi N, Ohnita K, Ichikawa T, et al. Novel serine/threonine kinase 11 gene mutations in Peutz–Jeghers syndrome patients and endoscopic management. World J Gastrointest Endosc. 2013;5:102–10.PubMedCentralPubMedCrossRef Yajima H, Isomoto H, Nishioka H, Yamaguchi N, Ohnita K, Ichikawa T, et al. Novel serine/threonine kinase 11 gene mutations in Peutz–Jeghers syndrome patients and endoscopic management. World J Gastrointest Endosc. 2013;5:102–10.PubMedCentralPubMedCrossRef
23.
go back to reference Kim JW, Im SA, Kim MA, Cho HJ, Lee DW, Lee KH, et al. Ataxia-telangiectasia mutated (ATM) protein expression with microsatellite instability in gastric cancer as prognostic marker. Int J Cancer 2014:134;72–80.PubMedCrossRef Kim JW, Im SA, Kim MA, Cho HJ, Lee DW, Lee KH, et al. Ataxia-telangiectasia mutated (ATM) protein expression with microsatellite instability in gastric cancer as prognostic marker. Int J Cancer 2014:134;72–80.PubMedCrossRef
24.
go back to reference Barbi S, Cataldo I, De Manzoni G, Bersani S, Lamba S, Mattuzzi S, et al. The analysis of PIK3CA mutations in gastric carcinoma and metanalysis of literature suggest that exon-selectivity is a signature of cancer type. J Exp Clin Cancer Res. 2010;29:32.PubMedCentralPubMedCrossRef Barbi S, Cataldo I, De Manzoni G, Bersani S, Lamba S, Mattuzzi S, et al. The analysis of PIK3CA mutations in gastric carcinoma and metanalysis of literature suggest that exon-selectivity is a signature of cancer type. J Exp Clin Cancer Res. 2010;29:32.PubMedCentralPubMedCrossRef
25.
go back to reference Wang P, Dong Q, Zhang C, Kuan PF, Liu Y, Jeck WR, et al. Mutations in isocitrate dehydrogenase 1 and 2 occur frequently in intrahepatic cholangiocarcinomas and share hypermethylation targets with glioblastomas. Oncogene. 2013;32:3091–100.PubMedCentralPubMedCrossRef Wang P, Dong Q, Zhang C, Kuan PF, Liu Y, Jeck WR, et al. Mutations in isocitrate dehydrogenase 1 and 2 occur frequently in intrahepatic cholangiocarcinomas and share hypermethylation targets with glioblastomas. Oncogene. 2013;32:3091–100.PubMedCentralPubMedCrossRef
Metadata
Title
High-throughput mutation profiling identifies novel molecular dysregulation in high-grade intraepithelial neoplasia and early gastric cancers
Authors
Matteo Fassan
Michele Simbolo
Emilio Bria
Andrea Mafficini
Sara Pilotto
Paola Capelli
Maria Bencivenga
Sara Pecori
Claudio Luchini
Diogo Neves
Giona Turri
Caterina Vicentini
Licia Montagna
Anna Tomezzoli
Giampaolo Tortora
Marco Chilosi
Giovanni De Manzoni
Aldo Scarpa
Publication date
01-07-2014
Publisher
Springer Japan
Published in
Gastric Cancer / Issue 3/2014
Print ISSN: 1436-3291
Electronic ISSN: 1436-3305
DOI
https://doi.org/10.1007/s10120-013-0315-1

Other articles of this Issue 3/2014

Gastric Cancer 3/2014 Go to the issue
Live Webinar | 27-06-2024 | 18:00 (CEST)

Keynote webinar | Spotlight on medication adherence

Live: Thursday 27th June 2024, 18:00-19:30 (CEST)

WHO estimates that half of all patients worldwide are non-adherent to their prescribed medication. The consequences of poor adherence can be catastrophic, on both the individual and population level.

Join our expert panel to discover why you need to understand the drivers of non-adherence in your patients, and how you can optimize medication adherence in your clinics to drastically improve patient outcomes.

Prof. Kevin Dolgin
Prof. Florian Limbourg
Prof. Anoop Chauhan
Developed by: Springer Medicine
Obesity Clinical Trial Summary

At a glance: The STEP trials

A round-up of the STEP phase 3 clinical trials evaluating semaglutide for weight loss in people with overweight or obesity.

Developed by: Springer Medicine