Skip to main content
Top
Published in: Archives of Virology 8/2015

01-08-2015 | Brief Report

Fusarium circinatum isolates from northern Spain are commonly infected by three distinct mitoviruses

Authors: Eeva J. Vainio, Pablo Martínez-Álvarez, Diana Bezos, Jarkko Hantula, Julio J. Diez

Published in: Archives of Virology | Issue 8/2015

Login to get access

Abstract

Pitch canker is a serious disease of pines caused by the ascomycete fungus Gibberella circinata (anamorph = Fusarium circinatum). Three distinct mitovirus strains have been described in this fungus: Fusarium circinatum mitovirus 1 (FcMV1), FcMV2-1 and FcMV2-2. Here, we investigated the frequency and population variation of these viruses and closely related sequence variants in northern Spain using RT-PCR and sequencing. Each virus strain and similar sequence variants shared >95 % sequence identity and were collectively designated as virus types. All virus types were relatively common in Spain, with estimated prevalence of 18.5 %, 8.9 % and 16.3 % for FcMV1, FcMV2-1 and FcMV2-2, respectively.
Appendix
Available only for authorised users
Literature
1.
go back to reference Bezos D, Lomba JM, Martínez-Álvarez P, Fernández M, Diez JJ (2012) Effects of pruning in Monterrey pine plantations affected by Fusarium circinatum. For Syst 21:481–488 Bezos D, Lomba JM, Martínez-Álvarez P, Fernández M, Diez JJ (2012) Effects of pruning in Monterrey pine plantations affected by Fusarium circinatum. For Syst 21:481–488
2.
go back to reference Berbegal M, Pérez-Sierra A, Armengol J, Grünwald NJ (2013) Evidence for multiple introductions and clonality in Spanish populations of Fusarium circinatum. Phytopathology 103:851–861PubMedCrossRef Berbegal M, Pérez-Sierra A, Armengol J, Grünwald NJ (2013) Evidence for multiple introductions and clonality in Spanish populations of Fusarium circinatum. Phytopathology 103:851–861PubMedCrossRef
3.
go back to reference Cho WK, Lee K-M, Yu J, Son M, Kim K-H (2013) Insight into mycoviruses infecting Fusarium species. Adv Virus Res 86:273–288PubMedCrossRef Cho WK, Lee K-M, Yu J, Son M, Kim K-H (2013) Insight into mycoviruses infecting Fusarium species. Adv Virus Res 86:273–288PubMedCrossRef
4.
go back to reference Chu YM, Jeon JJ, Yea SJ, Kim YH, Yun SH, Lee YW, Kim KH (2002) Double-stranded RNA mycovirus from Fusarium graminearum. Appl Environ Microbiol 68:2529–2534PubMedCentralPubMedCrossRef Chu YM, Jeon JJ, Yea SJ, Kim YH, Yun SH, Lee YW, Kim KH (2002) Double-stranded RNA mycovirus from Fusarium graminearum. Appl Environ Microbiol 68:2529–2534PubMedCentralPubMedCrossRef
5.
go back to reference Excoffier L, Lischer HEL (2010) Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour 10:564–567PubMedCrossRef Excoffier L, Lischer HEL (2010) Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour 10:564–567PubMedCrossRef
6.
go back to reference Hepting GH, Roth ER (1946) Pitch canker, a new disease of some southern pines. J For 44:742–744 Hepting GH, Roth ER (1946) Pitch canker, a new disease of some southern pines. J For 44:742–744
7.
go back to reference Hillman BI, Cai G (2013) The family Narnaviridae: simplest of RNA viruses. Adv Virus Res 86:149–176PubMedCrossRef Hillman BI, Cai G (2013) The family Narnaviridae: simplest of RNA viruses. Adv Virus Res 86:149–176PubMedCrossRef
8.
go back to reference Hong Y, Dover SL, Cole TE, Brasier CM, Buck KW (1999) Multiple mitochondrial viruses in an isolate of the Dutch elm disease fungus Ophiostoma novo-ulmi. Virology 258:118–127PubMedCrossRef Hong Y, Dover SL, Cole TE, Brasier CM, Buck KW (1999) Multiple mitochondrial viruses in an isolate of the Dutch elm disease fungus Ophiostoma novo-ulmi. Virology 258:118–127PubMedCrossRef
9.
go back to reference Jurvansuu J, Kashif M, Vaario L, Vainio EJ, Hantula J (2014) Partitiviruses of a fungal forest pathogen have species-specific quantities of genome segments and transcripts. Virology 462–463:25–33PubMedCrossRef Jurvansuu J, Kashif M, Vaario L, Vainio EJ, Hantula J (2014) Partitiviruses of a fungal forest pathogen have species-specific quantities of genome segments and transcripts. Virology 462–463:25–33PubMedCrossRef
10.
go back to reference Martin DP, Lemey P, Lott M, Moulton V, Posada D, Lefeuvre P (2010) RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics 26:2462–2463PubMedCentralPubMedCrossRef Martin DP, Lemey P, Lott M, Moulton V, Posada D, Lefeuvre P (2010) RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics 26:2462–2463PubMedCentralPubMedCrossRef
11.
go back to reference Martínez-Álvarez P, Alves-Santos FM, Diez JJ (2012) In vitro and in vivo interactions between Trichoderma viride and Fusarium circinatum. Silva Fenn 46:303–316CrossRef Martínez-Álvarez P, Alves-Santos FM, Diez JJ (2012) In vitro and in vivo interactions between Trichoderma viride and Fusarium circinatum. Silva Fenn 46:303–316CrossRef
12.
go back to reference Martínez-Álvarez P, Pando V, Diez JJ (2014) Alternative species to replace Monterey pine plantations affected by pitch canker caused by Fusarium circinatum in northern Spain. Plant Pathol 63:1086–1094CrossRef Martínez-Álvarez P, Pando V, Diez JJ (2014) Alternative species to replace Monterey pine plantations affected by pitch canker caused by Fusarium circinatum in northern Spain. Plant Pathol 63:1086–1094CrossRef
13.
go back to reference Martínez-Álvarez P, Vainio EJ, Botella L, Hantula J, Diez JJ (2014) Three mitovirus strains infecting a single isolate of Fusarium circinatum comprise the first putative members of Narnaviridae among species of Fusarium. Arch Virol 159:2153–2155PubMedCrossRef Martínez-Álvarez P, Vainio EJ, Botella L, Hantula J, Diez JJ (2014) Three mitovirus strains infecting a single isolate of Fusarium circinatum comprise the first putative members of Narnaviridae among species of Fusarium. Arch Virol 159:2153–2155PubMedCrossRef
14.
go back to reference Park Y, Chen X, Punja ZK (2006) Molecular and biological characterization of a mitovirus in Chalara elegans (Thielaviopsis basicola). Phytopathology 96:468–479PubMedCrossRef Park Y, Chen X, Punja ZK (2006) Molecular and biological characterization of a mitovirus in Chalara elegans (Thielaviopsis basicola). Phytopathology 96:468–479PubMedCrossRef
15.
go back to reference Pfenning LH, da Silva Costa S, Pereira de Melo M, Costa H, Aires J (2014) First report and characterization of Fusarium circinatum, the causal agent of pitch canker in Brazil. Trop Plant Pathol 39:210–216CrossRef Pfenning LH, da Silva Costa S, Pereira de Melo M, Costa H, Aires J (2014) First report and characterization of Fusarium circinatum, the causal agent of pitch canker in Brazil. Trop Plant Pathol 39:210–216CrossRef
16.
go back to reference Schoebel CN, Zoller S, Rigling D (2014) Detection and genetic characterisation of a novel mycovirus in Hymenoscyphus fraxineus, the causal agent of ash dieback. Infect Genet Evol 28:78–86PubMedCrossRef Schoebel CN, Zoller S, Rigling D (2014) Detection and genetic characterisation of a novel mycovirus in Hymenoscyphus fraxineus, the causal agent of ash dieback. Infect Genet Evol 28:78–86PubMedCrossRef
17.
go back to reference Steenkamp ET, Rodas CA, Kvas M, Wingfield MJ (2012) Fusarium circinatum and pitch canker of Pinus in Colombia. Australas Plant Pathol 41:483–491CrossRef Steenkamp ET, Rodas CA, Kvas M, Wingfield MJ (2012) Fusarium circinatum and pitch canker of Pinus in Colombia. Australas Plant Pathol 41:483–491CrossRef
18.
go back to reference Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739PubMedCentralPubMedCrossRef Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739PubMedCentralPubMedCrossRef
19.
go back to reference Vainio EJ, Keriö S, Hantula J (2011) Description of a new putative virus infecting the conifer pathogenic fungus Heterobasidion parviporum with resemblance to Heterobasidion annosum P-type partitivirus. Arch Virol 156:79–86PubMedCrossRef Vainio EJ, Keriö S, Hantula J (2011) Description of a new putative virus infecting the conifer pathogenic fungus Heterobasidion parviporum with resemblance to Heterobasidion annosum P-type partitivirus. Arch Virol 156:79–86PubMedCrossRef
20.
go back to reference Vainio EJ, Piri T, Hantula J (2013) Virus community dynamics in the conifer pathogenic fungus Heterobasidion parviporum following an artificial introduction of a partitivirus. Microb Ecol 65:28–38PubMedCrossRef Vainio EJ, Piri T, Hantula J (2013) Virus community dynamics in the conifer pathogenic fungus Heterobasidion parviporum following an artificial introduction of a partitivirus. Microb Ecol 65:28–38PubMedCrossRef
21.
go back to reference Vainio EJ, Müller MM, Korhonen K, Piri T, Hantula J (2015) Viruses accumulate in aging infection centers of a fungal forest pathogen. ISME J 9:497–507PubMedCrossRef Vainio EJ, Müller MM, Korhonen K, Piri T, Hantula J (2015) Viruses accumulate in aging infection centers of a fungal forest pathogen. ISME J 9:497–507PubMedCrossRef
22.
go back to reference Vainio EJ, Jurvansuu J, Streng J, Rajamäki M, Jarkko Hantula J, Valkonen JPT (2015) Diagnosis and discovery of fungal viruses by deep sequencing of small RNAs. J Gen Virol 96:714–725PubMedCrossRef Vainio EJ, Jurvansuu J, Streng J, Rajamäki M, Jarkko Hantula J, Valkonen JPT (2015) Diagnosis and discovery of fungal viruses by deep sequencing of small RNAs. J Gen Virol 96:714–725PubMedCrossRef
24.
go back to reference Wikler K, Gordon TR (2000) An initial assessment of genetic relationships among populations of Fusarium circinatum in different parts of the world. Can J Bot 78:709–717 Wikler K, Gordon TR (2000) An initial assessment of genetic relationships among populations of Fusarium circinatum in different parts of the world. Can J Bot 78:709–717
Metadata
Title
Fusarium circinatum isolates from northern Spain are commonly infected by three distinct mitoviruses
Authors
Eeva J. Vainio
Pablo Martínez-Álvarez
Diana Bezos
Jarkko Hantula
Julio J. Diez
Publication date
01-08-2015
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 8/2015
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-015-2462-7

Other articles of this Issue 8/2015

Archives of Virology 8/2015 Go to the issue
Live Webinar | 27-06-2024 | 18:00 (CEST)

Keynote webinar | Spotlight on medication adherence

Live: Thursday 27th June 2024, 18:00-19:30 (CEST)

WHO estimates that half of all patients worldwide are non-adherent to their prescribed medication. The consequences of poor adherence can be catastrophic, on both the individual and population level.

Join our expert panel to discover why you need to understand the drivers of non-adherence in your patients, and how you can optimize medication adherence in your clinics to drastically improve patient outcomes.

Prof. Kevin Dolgin
Prof. Florian Limbourg
Prof. Anoop Chauhan
Developed by: Springer Medicine
Obesity Clinical Trial Summary

At a glance: The STEP trials

A round-up of the STEP phase 3 clinical trials evaluating semaglutide for weight loss in people with overweight or obesity.

Developed by: Springer Medicine