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Archives of Virology
Published in: Archives of Virology 3/2013

01-03-2013 | Annotated Sequence Record

Complete genome sequences of two novel begomoviruses infecting common bean in Venezuela

Authors: Elvira Fiallo-Olivé, Belén Márquez-Martín, Ishtiaq Hassan, Dorys T. Chirinos, Francis Geraud-Pouey, Jesús Navas-Castillo, Enrique Moriones

Published in: Archives of Virology | Issue 3/2013

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Abstract

The complete genome sequences of isolates of two new bipartite begomoviruses (genus Begomovirus, family Geminiviridae) found infecting common bean in Venezuela are provided. The names proposed for each of these viruses are “bean yellow chlorosis virus” (BYCV) and “bean white chlorosis mosaic virus” (BWCMV). Phylogenetic analysis showed that they segregated in two distinct clades of New World begomoviruses. This is the first report of begomoviruses infecting common bean in Venezuela.
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Literature
1.
Argüello-Astorga GR, Guevara-González RG, Herrera-Estrella LR, Rivera-Bustamante RF (1994) Geminivirus replication origins have a group-specific organization of iterative elements: a model for replication. Virology 203:90–100PubMedCrossRef
2.
Brown JK, Fauquet CM, Briddon RW, Zerbini M, Moriones E, Navas-Castillo J (2012) Geminiviridae. In: King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (eds) Virus Taxonomy. Ninth Report of the ICTV. Elsevier/Academic Press, London, pp 351–373
3.
Brown JK, Idris AM, Ostrow KM, Goldberg N, French R, Stenger DC (2005) Genetic and phenotypic variation of the pepper golden mosaic virus complex. Phytopathology 95:1217–1224PubMedCrossRef
4.
De Barro PJ, Liu S-S, Boykin LM, Dinsdale AB (2011) Bemisia tabaci: a statement of species status. Annu Rev Entomol 56:1–19PubMedCrossRef
5.
Fauquet CM, Briddon RW, Brown JK, Moriones E, Stanley J, Zerbini M, Zhou X (2008) Geminivirus strain demarcation and nomenclature. Arch Virol 153:783–821PubMedCrossRef
6.
Fiallo-Olivé E, Chirinos DT, Geraud-Pouey F, Moriones E, Navas-Castillo J (2012) Complete genome sequences of two begomoviruses infecting weeds in Venezuela. Arch Virol (in press)
7.
Fiallo-Olivé E, Navas-Castillo J, Moriones E, Martínez-Zubiaur Y (2010) Two novel begomoviruses belonging to different lineages infecting Rhynchosia minima. Arch Virol 155:2053–2058PubMedCrossRef
8.
Higgins DG, Bleasby AJ, Fuchs R (1992) CLUSTAL V: improved software for multiple sequence alignment. Comput Appl Biosci 8:189–191PubMed
9.
Inoue-Nagata AK, Albuquerque LC, Rocha WB, Nagata T (2004) A simple method for cloning the complete begomovirus genome using the bacteriophage φ29 DNA polymerase. J Virol Methods 116:209–211PubMedCrossRef
10.
Karkashian J, Ramos-Reynoso ED, Maxwell DP, Ramirez P (2011) Begomoviruses associated with Bean golden mosaic disease in Nicaragua. Plant Dis 95:901–906CrossRef
11.
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23:2947–2948PubMedCrossRef
12.
Lefeuvre P, Martin DP, Hoareau M, Naze F, Delatte H, Thierry M, Varsani A, Becker N, Reynaud B, Lett JM (2007) Begomovirus ‘melting pot’ in the south-west Indian Ocean islands: molecular diversity and evolution through recombination. J Gen Virol 88:3458–3468PubMedCrossRef
13.
Martin DP, Lemey P, Lott M, Moulton V, Posada D, Lefeuvre P (2010) RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics 26:2462–2463PubMedCrossRef
14.
Martínez-Zubiaur Y, Quiñones M, Fonseca D, Potter JL, Maxwell DP (2002) First report of tomato yellow leaf curl virus associated with beans, Phaseolus vulgaris, in Cuba. Plant Dis 86:814CrossRef
15.
Morales FJ (2006) History and current distribution of begomoviruses in Latin America. Adv Virus Res. 67:127–162PubMedCrossRef
16.
Silva SJC, Castillo-Urquiza GP, Hora-Júnior BT, Assunçao IP, Lima GSA, Pio-Ribeiro G, Mizubuti ESG, Zerbini FM (2012) Species diversity, phylogeny and genetic variability of begomovirus populations infecting leguminous weeds in northeastern Brazil. Plant Pathol 61:457–467CrossRef
17.
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739PubMedCrossRef
18.
Varma A, Mandal B, Singh MK (2011) Global emergence and spread of whitefly Bemisia tabaci transmitted geminiviruses. In: Thompson WMO (ed) The whitefly, Bemisia tabaci (Homoptera: Aleyrodidae) interaction with geminivirus-infected host plants. Springer, Netherlands, pp 205–292CrossRef
19.
Wyant PS, Strohmeier S, Schafer B, Krenz B, Assunçao IP, Lima GSD, Jeske H (2012) Circular DNA genomics (circomics) exemplified for geminiviruses in bean crops and weeds of northeastern Brazil. Virology 427:151–157PubMedCrossRef
Metadata
Title
Complete genome sequences of two novel begomoviruses infecting common bean in Venezuela
Authors
Elvira Fiallo-Olivé
Belén Márquez-Martín
Ishtiaq Hassan
Dorys T. Chirinos
Francis Geraud-Pouey
Jesús Navas-Castillo
Enrique Moriones
Publication date
01-03-2013
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 3/2013
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-012-1545-y

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