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Published in: Archives of Virology 10/2012

01-10-2012 | Annotated Sequence Record

Sequence and phylogenetic analysis of H7N3 avian influenza viruses isolated from poultry in China in 2011

Authors: Wu Hai-bo, Lu Ru-feng, Wo En-kang, You Jin-biao, Wang Yi-ting, Wang Qiao-gang, Xu Li-hua, Wu Nan-ping, Guo Chao-tan

Published in: Archives of Virology | Issue 10/2012

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Abstract

Four H7N3 avian influenza viruses (AIVs) were isolated from domestic ducks in live-poultry markets in Zhejiang Province, Eastern China, in 2011. All viruses were characterized by whole-genome sequencing with subsequent phylogenetic analysis and genetic comparison. Phylogenetic analysis of all eight viral genes showed that the viruses clustered in the Eurasian lineage of influenza viruses. The hemagglutinin cleavage site of all viruses indicated that the four strains were low-pathogenic avian influenza viruses.
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Literature
1.
go back to reference Webster RG, Bean WJ, Gorman OT, Chambers TM, Kawaoka Y (1992) Evolution and ecology of influenza A viruses. Microbiol Rev 56:152–179PubMed Webster RG, Bean WJ, Gorman OT, Chambers TM, Kawaoka Y (1992) Evolution and ecology of influenza A viruses. Microbiol Rev 56:152–179PubMed
2.
go back to reference Alexander DJ (2000) A review of avian influenza in different bird species. Vet Microbiol 74(1–2):3–13PubMedCrossRef Alexander DJ (2000) A review of avian influenza in different bird species. Vet Microbiol 74(1–2):3–13PubMedCrossRef
3.
go back to reference Mannelli A, Busani L, Toson M, Bertolini S, Marangon S (2007) Transmission parameters of highly pathogenic avian influenza (H7N1) among industrial poultry farms in northern Italy in 1999–2000. Prev Vet Med 81(4):318–322PubMedCrossRef Mannelli A, Busani L, Toson M, Bertolini S, Marangon S (2007) Transmission parameters of highly pathogenic avian influenza (H7N1) among industrial poultry farms in northern Italy in 1999–2000. Prev Vet Med 81(4):318–322PubMedCrossRef
4.
go back to reference Di Trani L, Bedini B, Cordioli P, Muscillo M, Vignolo E, Moreno A, Tollis M (2004) Molecular characterization of low pathogenicity H7N3 avian influenza viruses isolated in Italy. Avian Dis 48(2):376–383PubMedCrossRef Di Trani L, Bedini B, Cordioli P, Muscillo M, Vignolo E, Moreno A, Tollis M (2004) Molecular characterization of low pathogenicity H7N3 avian influenza viruses isolated in Italy. Avian Dis 48(2):376–383PubMedCrossRef
5.
go back to reference Spackman E, Senne DA, Davison S, Suarez DL (2003) Sequence analysis of recent H7 avian influenza viruses associated with three different outbreaks in commercial poultry in the United States. J Virol 77(24):13399–13402PubMedCrossRef Spackman E, Senne DA, Davison S, Suarez DL (2003) Sequence analysis of recent H7 avian influenza viruses associated with three different outbreaks in commercial poultry in the United States. J Virol 77(24):13399–13402PubMedCrossRef
6.
go back to reference van Kolfschooten F (2003) Dutch veterinarian becomes first victim of avian influenza. Lancet 361(9367):1444PubMedCrossRef van Kolfschooten F (2003) Dutch veterinarian becomes first victim of avian influenza. Lancet 361(9367):1444PubMedCrossRef
7.
go back to reference Koopmans M, Wilbrink B, Conyn M, Natrop G, van der Nat H, Vennema H, Meijer A, van Steenbergen J, Fouchier R, Osterhaus A, Bosman A (2004) Transmission of H7N7 avian influenza A virus to human beings during a large outbreak in commercial poultry farms in the Netherlands. Lancet 363(9409):587–593PubMedCrossRef Koopmans M, Wilbrink B, Conyn M, Natrop G, van der Nat H, Vennema H, Meijer A, van Steenbergen J, Fouchier R, Osterhaus A, Bosman A (2004) Transmission of H7N7 avian influenza A virus to human beings during a large outbreak in commercial poultry farms in the Netherlands. Lancet 363(9409):587–593PubMedCrossRef
8.
go back to reference Skowronski DM, Tweed SA, Petric M, Booth T, Li Y, Tam T (2006) Human illness and isolation of low-pathogenicity avian influenza virus of the H7N3 subtype in British Columbia. Canada. J Infect Dis 193(6):899–900CrossRef Skowronski DM, Tweed SA, Petric M, Booth T, Li Y, Tam T (2006) Human illness and isolation of low-pathogenicity avian influenza virus of the H7N3 subtype in British Columbia. Canada. J Infect Dis 193(6):899–900CrossRef
9.
go back to reference Li Y, Li C, Liu L, Wang H, Wang C, Tian G, Webster RG, Yu K, Chen H (2006) Characterization of an avian influenza virus of subtype H7N2 isolated from chickens in northern China. Virus Genes 33(1):117–122PubMedCrossRef Li Y, Li C, Liu L, Wang H, Wang C, Tian G, Webster RG, Yu K, Chen H (2006) Characterization of an avian influenza virus of subtype H7N2 isolated from chickens in northern China. Virus Genes 33(1):117–122PubMedCrossRef
10.
go back to reference Wu HB, Guo CT, Lu RF, Xu LH, Wo EK, You JB, Wang YT, Wang QG, Wu NP (2012) Genetic characterization of subtype H1 avian influenza viruses isolated from live poultry markets in Zhejiang Province, China, in 2011. Virus Genes 44(3):441–449PubMedCrossRef Wu HB, Guo CT, Lu RF, Xu LH, Wo EK, You JB, Wang YT, Wang QG, Wu NP (2012) Genetic characterization of subtype H1 avian influenza viruses isolated from live poultry markets in Zhejiang Province, China, in 2011. Virus Genes 44(3):441–449PubMedCrossRef
11.
go back to reference Horimoto T, Ito T, Alexander DJ, Kawaoka Y (1995) Cleavability of hemagglutinin from an extremely virulent strain of avian influenza virus containing a unique cleavage site sequence. J Vet Med Sci 57(5):927–930PubMedCrossRef Horimoto T, Ito T, Alexander DJ, Kawaoka Y (1995) Cleavability of hemagglutinin from an extremely virulent strain of avian influenza virus containing a unique cleavage site sequence. J Vet Med Sci 57(5):927–930PubMedCrossRef
12.
go back to reference Lee CW, Lee YJ, Senne DA, Suarez DL (2006) Pathogenic potential of North American H7N2 avian influenza virus: a mutagenesis study using reverse genetics. Virology 353(2):388–395PubMedCrossRef Lee CW, Lee YJ, Senne DA, Suarez DL (2006) Pathogenic potential of North American H7N2 avian influenza virus: a mutagenesis study using reverse genetics. Virology 353(2):388–395PubMedCrossRef
13.
go back to reference Yang H, Chen LM, Carney PJ, Donis RO, Stevens J (2010) Structures of receptor complexes of a North American H7N2 influenza hemagglutinin with a loop deletion in the receptor binding site. PLoS Pathog 6(9):e1001081PubMedCrossRef Yang H, Chen LM, Carney PJ, Donis RO, Stevens J (2010) Structures of receptor complexes of a North American H7N2 influenza hemagglutinin with a loop deletion in the receptor binding site. PLoS Pathog 6(9):e1001081PubMedCrossRef
14.
go back to reference Gambaryan AS, Matrosovich TY, Philipp J, Munster VJ, Fouchier RA, Cattoli G, Capua I, Krauss SL, Webster RG, Banks J, Bovin NV, Klenk HD, Matrosovich MN (2012) Receptor-binding profiles of h7 subtype influenza viruses in different host species. J Virol 86(8):4370–4379PubMedCrossRef Gambaryan AS, Matrosovich TY, Philipp J, Munster VJ, Fouchier RA, Cattoli G, Capua I, Krauss SL, Webster RG, Banks J, Bovin NV, Klenk HD, Matrosovich MN (2012) Receptor-binding profiles of h7 subtype influenza viruses in different host species. J Virol 86(8):4370–4379PubMedCrossRef
15.
go back to reference Liu J, Stevens DJ, Haire LF, Walker PA, Coombs PJ, Russell RJ, Gamblin SJ (1957) Skehel JJ (2009) Structures of receptor complexes formed by hemagglutinins from the Asian Influenza pandemic of. Proc Natl Acad Sci USA 106(40):17175–17180CrossRef Liu J, Stevens DJ, Haire LF, Walker PA, Coombs PJ, Russell RJ, Gamblin SJ (1957) Skehel JJ (2009) Structures of receptor complexes formed by hemagglutinins from the Asian Influenza pandemic of. Proc Natl Acad Sci USA 106(40):17175–17180CrossRef
16.
go back to reference Helenius A, Aebi M (2004) Roles of N-linked glycans in the endoplasmic reticulum. Annu Rev Biochem 73:1019–1049PubMedCrossRef Helenius A, Aebi M (2004) Roles of N-linked glycans in the endoplasmic reticulum. Annu Rev Biochem 73:1019–1049PubMedCrossRef
17.
go back to reference Aoki FY, Boivin G, Roberts N (2007) Influenza virus susceptibility and resistance to oseltamivir. Antivir Ther 12:603–616PubMed Aoki FY, Boivin G, Roberts N (2007) Influenza virus susceptibility and resistance to oseltamivir. Antivir Ther 12:603–616PubMed
18.
go back to reference Deyde VM, Xu X, Bright RA, Shaw M, Smith CB, Zhang Y, Shu Y, Gubareva LV, Cox NJ, Klimov AI (2007) Surveillance of resistance to adamantanes among influenza A (H3N2) and A (H1N1) viruses isolated worldwide. J Infect Dis 196(2):249–257PubMedCrossRef Deyde VM, Xu X, Bright RA, Shaw M, Smith CB, Zhang Y, Shu Y, Gubareva LV, Cox NJ, Klimov AI (2007) Surveillance of resistance to adamantanes among influenza A (H3N2) and A (H1N1) viruses isolated worldwide. J Infect Dis 196(2):249–257PubMedCrossRef
19.
go back to reference Hirst M, Astell CR, Griffith M, Coughlin SM, Moksa M, Zeng T, Smailus DE, Holt RA, Jones S, Marra MA, Petric M, Krajden M, Lawrence D, Mak A, Chow R, Skowronski DM, Tweed SA, Goh S, Brunham RC, Robinson J, Bowes V, Sojonky K, Byrne SK, Li Y, Kobasa D, Booth T, Paetzel M (2004) Novel avian influenza H7N3 strain outbreak, British Columbia. Emerg Infect Dis 10(12):2192–2195PubMedCrossRef Hirst M, Astell CR, Griffith M, Coughlin SM, Moksa M, Zeng T, Smailus DE, Holt RA, Jones S, Marra MA, Petric M, Krajden M, Lawrence D, Mak A, Chow R, Skowronski DM, Tweed SA, Goh S, Brunham RC, Robinson J, Bowes V, Sojonky K, Byrne SK, Li Y, Kobasa D, Booth T, Paetzel M (2004) Novel avian influenza H7N3 strain outbreak, British Columbia. Emerg Infect Dis 10(12):2192–2195PubMedCrossRef
20.
go back to reference Pasick J, Handel K, Robinson J, Copps J, Ridd D, Hills K, Kehler H, Cottam-Birt C, Neufeld J, Berhane Y, Czub S (2005) Intersegmental recombination between the haemagglutinin and matrix genes was responsible for the emergence of a highly pathogenic H7N3 avian influenza virus in British Columbia. J Gen Virol 86(Pt 3):727–731PubMedCrossRef Pasick J, Handel K, Robinson J, Copps J, Ridd D, Hills K, Kehler H, Cottam-Birt C, Neufeld J, Berhane Y, Czub S (2005) Intersegmental recombination between the haemagglutinin and matrix genes was responsible for the emergence of a highly pathogenic H7N3 avian influenza virus in British Columbia. J Gen Virol 86(Pt 3):727–731PubMedCrossRef
Metadata
Title
Sequence and phylogenetic analysis of H7N3 avian influenza viruses isolated from poultry in China in 2011
Authors
Wu Hai-bo
Lu Ru-feng
Wo En-kang
You Jin-biao
Wang Yi-ting
Wang Qiao-gang
Xu Li-hua
Wu Nan-ping
Guo Chao-tan
Publication date
01-10-2012
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 10/2012
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-012-1370-3

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