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01-07-2012 | Annotated Sequence Record

Complete genome sequence of pepper yellow mosaic virus, a potyvirus, occurring in Brazil

Authors: N. Lucinda, W. B. da Rocha, A. K. Inoue-Nagata, T. Nagata

Published in: Archives of Virology | Issue 7/2012

Abstract

The complete genomic sequence of pepper yellow mosaic virus (PepYMV), a member of the genus Potyvirus, was determined. The sequence was 9745 nucleotides long, excluding the 3′ poly(A) tail. The genome contained a large open reading frame encoding a polyprotein of 3085 amino acids, which contained the typically conserved motifs found in members of the genus Potyvirus and an additional P3-PIPO (pretty interesting potyvirus ORF). In a pairwise comparison with other potyvirus sequences, the full genome of PepYMV shared a maximum of 63.84 % nucleotide sequence identity with pepper mottle virus (PepMoV), followed by verbena virus Y (VVY, 62.11 %), potato virus Y (PVY, 62.07 %) and Peru tomato mosaic virus (PTV, 62.00 %). Based upon a phylogenetic analysis, PepYMV was most closely related to PepMoV and PTV, within the PVY subgroup cluster, like most potyviruses isolated in solanaceous hosts in South America.

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Title: Complete genome sequence of pepper yellow mosaic virus, a potyvirus, occurring in Brazil
Authors: N. Lucinda
W. B. da Rocha
A. K. Inoue-Nagata
T. Nagata
Publication date: 01-07-2012
Publisher: Springer Vienna
Published in: Archives of Virology / Issue 7/2012
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI: https://doi.org/10.1007/s00705-012-1313-z

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