Skip to main content
Top
Published in: Archives of Virology 4/2010

01-04-2010 | Original Article

Predominance of rotavirus G2P[4] and emergence of G12P[9] strains in Asunción, Paraguay, 2006–2007

Authors: Magaly Martínez, Alberto A. Amarilla, Maria E. Galeano, Victor H. Aquino, Norma Fariña, Graciela Russomando, Gabriel I. Parra

Published in: Archives of Virology | Issue 4/2010

Login to get access

Abstract

Rotavirus is the most common cause of severe diarrhea in children worldwide. Monitoring the diversity of rotavirus strains is of great importance for current and future vaccination programs. To determine the diversity of rotavirus circulating in Asuncion, Paraguay, between 2006 and 2007, we carried out a molecular characterization of rotaviruses detected in children <5 years old and adults (>18 years old). We found that the most common circulating strain was G2P[4] (69/143), followed by G9P[8] (37/143). The temporal distribution of strains showed that, in children, G2P[4] was predominant in 2006, and that G2P[4] and G9P[8] were co-predominant in 2007, whereas in adults, G2P[4] was predominant in both years. Additionally, one G9P[6] and three G12P[9] strains were found in adult samples, making this the first report of these strains circulating in Paraguay. Sequence analysis of the G12P[9] strains suggests across-border migration of this strain within the southern cone of America.
Appendix
Available only for authorised users
Literature
1.
go back to reference Amarilla A, Espinola EE, Galeano ME, Farina N, Russomando G, Parra GI (2007) Rotavirus infection in the Paraguayan population from 2004 to 2005: high incidence of rotavirus strains with short electropherotype in children and adults. Med Sci Monit 13:CR333–CR337PubMed Amarilla A, Espinola EE, Galeano ME, Farina N, Russomando G, Parra GI (2007) Rotavirus infection in the Paraguayan population from 2004 to 2005: high incidence of rotavirus strains with short electropherotype in children and adults. Med Sci Monit 13:CR333–CR337PubMed
2.
go back to reference Araujo IT, Ferreira MS, Fialho AM, Assis RM, Cruz CM, Rocha M, Leite JP (2001) Rotavirus genotypes P[4]G9, P[6]G9, and P[8]G9 in hospitalized children with acute gastroenteritis in Rio de Janeiro, Brazil. J Clin Microbiol 39:1999–2001CrossRefPubMed Araujo IT, Ferreira MS, Fialho AM, Assis RM, Cruz CM, Rocha M, Leite JP (2001) Rotavirus genotypes P[4]G9, P[6]G9, and P[8]G9 in hospitalized children with acute gastroenteritis in Rio de Janeiro, Brazil. J Clin Microbiol 39:1999–2001CrossRefPubMed
3.
go back to reference Bok K, Castagnaro N, Borsa A, Nates S, Espul C, Fay O, Fabri A, Grinstein S, Miceli I, Matson DO, Gomez JA (2001) Surveillance for rotavirus in Argentina. J Med Virol 65:190–198CrossRefPubMed Bok K, Castagnaro N, Borsa A, Nates S, Espul C, Fay O, Fabri A, Grinstein S, Miceli I, Matson DO, Gomez JA (2001) Surveillance for rotavirus in Argentina. J Med Virol 65:190–198CrossRefPubMed
4.
go back to reference Boom R, Sol CJ, Salimans MM, Jansen CL, Wertheim-van Dillen PM, van der Noordaa J (1990) Rapid and simple method for purification of nucleic acids. J Clin Microbiol 28:495–503PubMed Boom R, Sol CJ, Salimans MM, Jansen CL, Wertheim-van Dillen PM, van der Noordaa J (1990) Rapid and simple method for purification of nucleic acids. J Clin Microbiol 28:495–503PubMed
5.
go back to reference Candia N, Parra GI, Chirico M, Velazquez G, Farina N, Laspina F, Shin J, De Sierra MJ, Russomando G, Arbiza J (2003) Acute diarrhea in Paraguayan children population: detection of rotavirus electropherotypes. Acta Virol 47:137–140PubMed Candia N, Parra GI, Chirico M, Velazquez G, Farina N, Laspina F, Shin J, De Sierra MJ, Russomando G, Arbiza J (2003) Acute diarrhea in Paraguayan children population: detection of rotavirus electropherotypes. Acta Virol 47:137–140PubMed
6.
go back to reference Castello AA, Nakagomi T, Nakagomi O, Jiang B, Kang JO, Glass RI, Glikmann G, Gentsch JR (2009) Characterization of genotype P[9]G12 rotavirus strains from Argentina: high similarity with Japanese and Korean G12 strains. J Med Virol 81:371–381CrossRefPubMed Castello AA, Nakagomi T, Nakagomi O, Jiang B, Kang JO, Glass RI, Glikmann G, Gentsch JR (2009) Characterization of genotype P[9]G12 rotavirus strains from Argentina: high similarity with Japanese and Korean G12 strains. J Med Virol 81:371–381CrossRefPubMed
7.
go back to reference Das BK, Gentsch JR, Cicirello HG, Woods PA, Gupta A, Ramachandran M, Kumar R, Bhan MK, Glass RI (1994) Characterization of rotavirus strains from newborns in New Delhi, India. J Clin Microbiol 32:1820–1822PubMed Das BK, Gentsch JR, Cicirello HG, Woods PA, Gupta A, Ramachandran M, Kumar R, Bhan MK, Glass RI (1994) Characterization of rotavirus strains from newborns in New Delhi, India. J Clin Microbiol 32:1820–1822PubMed
8.
go back to reference de Oliveira LH, Danovaro-Holliday MC, Matus CR, Andrus JK (2008) Rotavirus vaccine introduction in the Americas: progress and lessons learned. Expert Rev Vaccines 7:345–353CrossRefPubMed de Oliveira LH, Danovaro-Holliday MC, Matus CR, Andrus JK (2008) Rotavirus vaccine introduction in the Americas: progress and lessons learned. Expert Rev Vaccines 7:345–353CrossRefPubMed
9.
go back to reference Espinola EE, Amarilla A, Arbiza J, Parra GI (2008) Sequence and phylogenetic analysis of the VP4 gene of human rotaviruses isolated in Paraguay. Arch Virol 153:1067–1073CrossRefPubMed Espinola EE, Amarilla A, Arbiza J, Parra GI (2008) Sequence and phylogenetic analysis of the VP4 gene of human rotaviruses isolated in Paraguay. Arch Virol 153:1067–1073CrossRefPubMed
10.
go back to reference Gentsch JR, Glass RI, Woods P, Gouvea V, Gorziglia M, Flores J, Das BK, Bhan MK (1992) Identification of group A rotavirus gene 4 types by polymerase chain reaction. J Clin Microbiol 30:1365–1373PubMed Gentsch JR, Glass RI, Woods P, Gouvea V, Gorziglia M, Flores J, Das BK, Bhan MK (1992) Identification of group A rotavirus gene 4 types by polymerase chain reaction. J Clin Microbiol 30:1365–1373PubMed
11.
go back to reference Gouvea V, Glass RI, Woods P, Taniguchi K, Clark HF, Forrester B, Fang ZY (1990) Polymerase chain reaction amplification and typing of rotavirus nucleic acid from stool specimens. J Clin Microbiol 28:276–282PubMed Gouvea V, Glass RI, Woods P, Taniguchi K, Clark HF, Forrester B, Fang ZY (1990) Polymerase chain reaction amplification and typing of rotavirus nucleic acid from stool specimens. J Clin Microbiol 28:276–282PubMed
12.
go back to reference Grimwood K, Kirkwood CD (2008) Human rotavirus vaccines: too early for the strain to tell. Lancet 371:1144–1145CrossRefPubMed Grimwood K, Kirkwood CD (2008) Human rotavirus vaccines: too early for the strain to tell. Lancet 371:1144–1145CrossRefPubMed
13.
go back to reference Gurgel RQ, Cuevas LE, Vieira SC, Barros VC, Fontes PB, Salustino EF, Nakagomi O, Nakagomi T, Dove W, Cunliffe N, Hart CA (2007) Predominance of rotavirus P[4]G2 in a vaccinated population, Brazil. Emerg Infect Dis 13:1571–1573PubMed Gurgel RQ, Cuevas LE, Vieira SC, Barros VC, Fontes PB, Salustino EF, Nakagomi O, Nakagomi T, Dove W, Cunliffe N, Hart CA (2007) Predominance of rotavirus P[4]G2 in a vaccinated population, Brazil. Emerg Infect Dis 13:1571–1573PubMed
14.
go back to reference Heiman EM, McDonald SM, Barro M, Taraporewala ZF, Bar-Magen T, Patton JT (2008) Group A human rotavirus genomics: evidence that gene constellations are influenced by viral protein interactions. J Virol 82:11106–11116CrossRefPubMed Heiman EM, McDonald SM, Barro M, Taraporewala ZF, Bar-Magen T, Patton JT (2008) Group A human rotavirus genomics: evidence that gene constellations are influenced by viral protein interactions. J Virol 82:11106–11116CrossRefPubMed
15.
go back to reference Leite JP, Carvalho-Costa FA, Linhares AC (2008) Group A rotavirus genotypes and the ongoing Brazilian experience: a review. Mem Inst Oswaldo Cruz 103:745–753CrossRefPubMed Leite JP, Carvalho-Costa FA, Linhares AC (2008) Group A rotavirus genotypes and the ongoing Brazilian experience: a review. Mem Inst Oswaldo Cruz 103:745–753CrossRefPubMed
16.
go back to reference Matthijnssens J, Ciarlet M, Heiman E, Arijs I, Delbeke T, McDonald SM, Palombo EA, Iturriza-Gomara M, Maes P, Patton JT, Rahman M, Van Ranst M (2008) Full genome-based classification of rotaviruses reveals a common origin between human Wa-like and porcine rotavirus strains and human DS-1-like and bovine rotavirus strains. J Virol 82:3204–3219CrossRefPubMed Matthijnssens J, Ciarlet M, Heiman E, Arijs I, Delbeke T, McDonald SM, Palombo EA, Iturriza-Gomara M, Maes P, Patton JT, Rahman M, Van Ranst M (2008) Full genome-based classification of rotaviruses reveals a common origin between human Wa-like and porcine rotavirus strains and human DS-1-like and bovine rotavirus strains. J Virol 82:3204–3219CrossRefPubMed
17.
18.
go back to reference Page NA, Steele AD (2004) Antigenic and genetic characterization of serotype G2 human rotavirus strains from South Africa from 1984 to 1998. J Med Virol 72:320–327CrossRefPubMed Page NA, Steele AD (2004) Antigenic and genetic characterization of serotype G2 human rotavirus strains from South Africa from 1984 to 1998. J Med Virol 72:320–327CrossRefPubMed
19.
go back to reference Parashar UD, Hummelman EG, Bresee JS, Miller MA, Glass RI (2003) Global illness and deaths caused by rotavirus disease in children. Emerg Infect Dis 9:565–572PubMed Parashar UD, Hummelman EG, Bresee JS, Miller MA, Glass RI (2003) Global illness and deaths caused by rotavirus disease in children. Emerg Infect Dis 9:565–572PubMed
20.
go back to reference Parashar UD, Gibson CJ, Bresee JS, Glass RI (2006) Rotavirus and severe childhood diarrhea. Emerg Infect Dis 12:304–306PubMed Parashar UD, Gibson CJ, Bresee JS, Glass RI (2006) Rotavirus and severe childhood diarrhea. Emerg Infect Dis 12:304–306PubMed
21.
go back to reference Parra GI, Bok K, Martinez V, Russomando G, Gomez J (2005) Molecular characterization and genetic variation of the VP7 gene of human rotaviruses isolated in Paraguay. J Med Virol 77:579–586CrossRefPubMed Parra GI, Bok K, Martinez V, Russomando G, Gomez J (2005) Molecular characterization and genetic variation of the VP7 gene of human rotaviruses isolated in Paraguay. J Med Virol 77:579–586CrossRefPubMed
22.
go back to reference Parra GI, Espinola EE, Amarilla AA, Stupka J, Martinez M, Zunini M, Galeano ME, Gomes K, Russomando G, Arbiza J (2007) Diversity of group A rotavirus strains circulating in Paraguay from 2002 to 2005: detection of an atypical G1 in South America. J Clin Virol 40:135–141CrossRefPubMed Parra GI, Espinola EE, Amarilla AA, Stupka J, Martinez M, Zunini M, Galeano ME, Gomes K, Russomando G, Arbiza J (2007) Diversity of group A rotavirus strains circulating in Paraguay from 2002 to 2005: detection of an atypical G1 in South America. J Clin Virol 40:135–141CrossRefPubMed
23.
go back to reference Parra GI (2009) Seasonal shifts of group A rotavirus strains as a possible mechanism of persistence in the human population. J Med Virol 81:568–571CrossRefPubMed Parra GI (2009) Seasonal shifts of group A rotavirus strains as a possible mechanism of persistence in the human population. J Med Virol 81:568–571CrossRefPubMed
24.
go back to reference Patel MM, de Oliveira LH, Bispo AM, Gentsch J, Parashar UD (2008) Rotavirus P[4]G2 in a vaccinated population, Brazil. Emerg Infect Dis 14:863–865CrossRefPubMed Patel MM, de Oliveira LH, Bispo AM, Gentsch J, Parashar UD (2008) Rotavirus P[4]G2 in a vaccinated population, Brazil. Emerg Infect Dis 14:863–865CrossRefPubMed
25.
go back to reference Pietruchinski E, Benati F, Lauretti F, Kisielius J, Ueda M, Volotao EM, Soares CC, Hoshino Y, Linhares RE, Nozawa C, Santos N (2006) Rotavirus diarrhea in children and adults in a southern city of Brazil in 2003: distribution of G/P types and finding of a rare G12 strain. J Med Virol 78:1241–1249CrossRefPubMed Pietruchinski E, Benati F, Lauretti F, Kisielius J, Ueda M, Volotao EM, Soares CC, Hoshino Y, Linhares RE, Nozawa C, Santos N (2006) Rotavirus diarrhea in children and adults in a southern city of Brazil in 2003: distribution of G/P types and finding of a rare G12 strain. J Med Virol 78:1241–1249CrossRefPubMed
26.
go back to reference Pongsuwanna Y, Guntapong R, Chiwakul M, Tacharoenmuang R, Onvimala N, Wakuda M, Kobayashi N, Taniguchi K (2002) Detection of a human rotavirus with G12 and P[9] specificity in Thailand. J Clin Microbiol 40:1390–1394CrossRefPubMed Pongsuwanna Y, Guntapong R, Chiwakul M, Tacharoenmuang R, Onvimala N, Wakuda M, Kobayashi N, Taniguchi K (2002) Detection of a human rotavirus with G12 and P[9] specificity in Thailand. J Clin Microbiol 40:1390–1394CrossRefPubMed
27.
go back to reference Rahman M, Matthijnssens J, Yang X, Delbeke T, Arijs I, Taniguchi K, Iturriza-Gomara M, Iftekharuddin N, Azim T, Van Ranst M (2007) Evolutionary history and global spread of the emerging G12 human rotaviruses. J Virol 81:2382–2390CrossRefPubMed Rahman M, Matthijnssens J, Yang X, Delbeke T, Arijs I, Taniguchi K, Iturriza-Gomara M, Iftekharuddin N, Azim T, Van Ranst M (2007) Evolutionary history and global spread of the emerging G12 human rotaviruses. J Virol 81:2382–2390CrossRefPubMed
28.
go back to reference Samajdar S, Varghese V, Barman P, Ghosh S, Mitra U, Dutta P, Bhattacharya SK, Narasimham MV, Panda P, Krishnan T, Kobayashi N, Naik TN (2006) Changing pattern of human group A rotaviruses: emergence of G12 as an important pathogen among children in eastern India. J Clin Virol 36:183–188CrossRefPubMed Samajdar S, Varghese V, Barman P, Ghosh S, Mitra U, Dutta P, Bhattacharya SK, Narasimham MV, Panda P, Krishnan T, Kobayashi N, Naik TN (2006) Changing pattern of human group A rotaviruses: emergence of G12 as an important pathogen among children in eastern India. J Clin Virol 36:183–188CrossRefPubMed
29.
go back to reference Santos N, Volotao EM, Soares CC, Albuquerque MC, da Silva FM, de Carvalho TR, Pereira CF, Chizhikov V, Hoshino Y (2001) Rotavirus strains bearing genotype G9 or P[9] recovered from Brazilian children with diarrhea from 1997 to 1999. J Clin Microbiol 39:1157–1160CrossRefPubMed Santos N, Volotao EM, Soares CC, Albuquerque MC, da Silva FM, de Carvalho TR, Pereira CF, Chizhikov V, Hoshino Y (2001) Rotavirus strains bearing genotype G9 or P[9] recovered from Brazilian children with diarrhea from 1997 to 1999. J Clin Microbiol 39:1157–1160CrossRefPubMed
30.
go back to reference Santos N, Hoshino Y (2005) Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine. Rev Med Virol 15:29–56CrossRefPubMed Santos N, Hoshino Y (2005) Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine. Rev Med Virol 15:29–56CrossRefPubMed
31.
go back to reference Schumann T, Hotzel H, Otto P, Johne R (2009) Evidence of interspecies transmission and reassortment among avian group A rotaviruses. Virology 386:334–343CrossRefPubMed Schumann T, Hotzel H, Otto P, Johne R (2009) Evidence of interspecies transmission and reassortment among avian group A rotaviruses. Virology 386:334–343CrossRefPubMed
32.
go back to reference Shinozaki K, Okada M, Nagashima S, Kaiho I, Taniguchi K (2004) Characterization of human rotavirus strains with G12 and P[9] detected in Japan. J Med Virol 73:612–616CrossRefPubMed Shinozaki K, Okada M, Nagashima S, Kaiho I, Taniguchi K (2004) Characterization of human rotavirus strains with G12 and P[9] detected in Japan. J Med Virol 73:612–616CrossRefPubMed
33.
go back to reference Stupka JA, Parra GI, Gomez J, Arbiza J (2007) Detection of human rotavirus G9P[8] strains circulating in Argentina: phylogenetic analysis of VP7 and NSP4 genes. J Med Virol 79:838–842CrossRefPubMed Stupka JA, Parra GI, Gomez J, Arbiza J (2007) Detection of human rotavirus G9P[8] strains circulating in Argentina: phylogenetic analysis of VP7 and NSP4 genes. J Med Virol 79:838–842CrossRefPubMed
34.
go back to reference Stupka JA, Carvalho P, Amarilla AA, Massana M, Parra GI (2009) National Rotavirus Surveillance in Argentina: High incidence of G9P[8] strains and detection of G4P[6] strains with porcine characteristics. Infect Genet Evol 9:1225–1231CrossRefPubMed Stupka JA, Carvalho P, Amarilla AA, Massana M, Parra GI (2009) National Rotavirus Surveillance in Argentina: High incidence of G9P[8] strains and detection of G4P[6] strains with porcine characteristics. Infect Genet Evol 9:1225–1231CrossRefPubMed
35.
go back to reference Swofford DL (2003) PAUP*. Phylogenetic analysis using parsimony (*and other methods). Version 4. Sinauer Associates, Sunderland Swofford DL (2003) PAUP*. Phylogenetic analysis using parsimony (*and other methods). Version 4. Sinauer Associates, Sunderland
36.
go back to reference Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596–1599CrossRefPubMed Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596–1599CrossRefPubMed
37.
go back to reference Ursu K, Kisfali P, Rigó D, Ivanics E, Erdélyi K, Dán A, Melegh B, Martella V, Bányai K (2009) Molecular analysis of the VP7 gene of pheasant rotaviruses identifies a new genotype, designated G23. Arch Virol 154:1365–1369CrossRefPubMed Ursu K, Kisfali P, Rigó D, Ivanics E, Erdélyi K, Dán A, Melegh B, Martella V, Bányai K (2009) Molecular analysis of the VP7 gene of pheasant rotaviruses identifies a new genotype, designated G23. Arch Virol 154:1365–1369CrossRefPubMed
38.
go back to reference Wakuda M, Nagashima S, Kobayashi N, Pongsuwanna Y, Taniguchi K (2003) Serologic and genomic characterization of a G12 human rotavirus in Thailand. J Clin Microbiol 41:5764–5769CrossRefPubMed Wakuda M, Nagashima S, Kobayashi N, Pongsuwanna Y, Taniguchi K (2003) Serologic and genomic characterization of a G12 human rotavirus in Thailand. J Clin Microbiol 41:5764–5769CrossRefPubMed
39.
go back to reference Watanabe M, Nakagomi T, Koshimura Y, Nakagomi O (2001) Direct evidence for genome segment reassortment between concurrently-circulating human rotavirus strains. Arch Virol 146:557–570CrossRefPubMed Watanabe M, Nakagomi T, Koshimura Y, Nakagomi O (2001) Direct evidence for genome segment reassortment between concurrently-circulating human rotavirus strains. Arch Virol 146:557–570CrossRefPubMed
Metadata
Title
Predominance of rotavirus G2P[4] and emergence of G12P[9] strains in Asunción, Paraguay, 2006–2007
Authors
Magaly Martínez
Alberto A. Amarilla
Maria E. Galeano
Victor H. Aquino
Norma Fariña
Graciela Russomando
Gabriel I. Parra
Publication date
01-04-2010
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 4/2010
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-010-0617-0

Other articles of this Issue 4/2010

Archives of Virology 4/2010 Go to the issue
Live Webinar | 27-06-2024 | 18:00 (CEST)

Keynote webinar | Spotlight on medication adherence

Live: Thursday 27th June 2024, 18:00-19:30 (CEST)

WHO estimates that half of all patients worldwide are non-adherent to their prescribed medication. The consequences of poor adherence can be catastrophic, on both the individual and population level.

Join our expert panel to discover why you need to understand the drivers of non-adherence in your patients, and how you can optimize medication adherence in your clinics to drastically improve patient outcomes.

Prof. Kevin Dolgin
Prof. Florian Limbourg
Prof. Anoop Chauhan
Developed by: Springer Medicine
Obesity Clinical Trial Summary

At a glance: The STEP trials

A round-up of the STEP phase 3 clinical trials evaluating semaglutide for weight loss in people with overweight or obesity.

Developed by: Springer Medicine