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Published in: Forensic Science, Medicine and Pathology 3/2017

01-09-2017 | Review

Increasing the reach of forensic genetics with massively parallel sequencing

Authors: Bruce Budowle, Sarah E. Schmedes, Frank R. Wendt

Published in: Forensic Science, Medicine and Pathology | Issue 3/2017

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Abstract

The field of forensic genetics has made great strides in the analysis of biological evidence related to criminal and civil matters. More so, the discipline has set a standard of performance and quality in the forensic sciences. The advent of massively parallel sequencing will allow the field to expand its capabilities substantially. This review describes the salient features of massively parallel sequencing and how it can impact forensic genetics. The features of this technology offer increased number and types of genetic markers that can be analyzed, higher throughput of samples, and the capability of targeting different organisms, all by one unifying methodology. While there are many applications, three are described where massively parallel sequencing will have immediate impact: molecular autopsy, microbial forensics and differentiation of monozygotic twins. The intent of this review is to expose the forensic science community to the potential enhancements that have or are soon to arrive and demonstrate the continued expansion the field of forensic genetics and its service in the investigation of legal matters.
Literature
1.
go back to reference Landsteiner K. Ueber agglutinationserscheinungen normalen menschlichen. Wien Klin Wochenschr. 1901;14:1132–4. Landsteiner K. Ueber agglutinationserscheinungen normalen menschlichen. Wien Klin Wochenschr. 1901;14:1132–4.
2.
go back to reference Ottenberg R. Medicolegal application of human blood grouping. J Amer Hum Genet. 1932;77:682–3. Ottenberg R. Medicolegal application of human blood grouping. J Amer Hum Genet. 1932;77:682–3.
3.
go back to reference Jeffreys AJ, Wilson V, Thein SL. Individual-specific 'fingerprints' of human DNA. Nature. 1985;316:76–9.CrossRef Jeffreys AJ, Wilson V, Thein SL. Individual-specific 'fingerprints' of human DNA. Nature. 1985;316:76–9.CrossRef
4.
go back to reference Gill P, Jeffreys AJ, Werrett DJ. Forensic application of DNA 'fingerprints'. Nature. 1985;318:577–9.CrossRef Gill P, Jeffreys AJ, Werrett DJ. Forensic application of DNA 'fingerprints'. Nature. 1985;318:577–9.CrossRef
5.
go back to reference Budowle B, Eisenberg AJ. Forensic genetics. In: Rimoin DL, Connor JM, Pyeritz RE, Korf BR, editors. Emery and Rimoin’s Principles and Practice of Medical Genetics, vol. 1. 5th ed. Philadelphia: Elevier; 2007. p. 501–17. Budowle B, Eisenberg AJ. Forensic genetics. In: Rimoin DL, Connor JM, Pyeritz RE, Korf BR, editors. Emery and Rimoin’s Principles and Practice of Medical Genetics, vol. 1. 5th ed. Philadelphia: Elevier; 2007. p. 501–17.
6.
go back to reference Budowle B, Planz JV, Campbell R, Eisenberg AJ. Molecular diagnostic applications in forensic science. In: Patrinos G, Ansorge W, editors. Molecular Diagnostics. Amsterdam: Elsevier; 2005. p. 267–80. Budowle B, Planz JV, Campbell R, Eisenberg AJ. Molecular diagnostic applications in forensic science. In: Patrinos G, Ansorge W, editors. Molecular Diagnostics. Amsterdam: Elsevier; 2005. p. 267–80.
7.
8.
go back to reference Berger C, Berger B, Parson W. Sequence analysis of the canine mitochondrial DNA control region from shed hair samples in criminal investigations. Methods Mol Biol. 2012;830:331–48.PubMedCrossRef Berger C, Berger B, Parson W. Sequence analysis of the canine mitochondrial DNA control region from shed hair samples in criminal investigations. Methods Mol Biol. 2012;830:331–48.PubMedCrossRef
9.
go back to reference Gomes C, Magalhães M, Alves C, Amorim A, Pinto N, Gusmão L. Comparative evaluation of alternative batteries of genetic markers to complement autosomal STRs in kinship investigations: autosomal indels vs. X-chromosome STRs Int J Legal Med. 2012;126:917–21.PubMedCrossRef Gomes C, Magalhães M, Alves C, Amorim A, Pinto N, Gusmão L. Comparative evaluation of alternative batteries of genetic markers to complement autosomal STRs in kinship investigations: autosomal indels vs. X-chromosome STRs Int J Legal Med. 2012;126:917–21.PubMedCrossRef
10.
go back to reference Honda K, Roewer L, de Knijff P. Male DNA typing from 25-year-old vaginal swabs using Y chromosomal STR polymorphisms in a retrial request case. J Forensic Sci. 1999;44:868–72.PubMedCrossRef Honda K, Roewer L, de Knijff P. Male DNA typing from 25-year-old vaginal swabs using Y chromosomal STR polymorphisms in a retrial request case. J Forensic Sci. 1999;44:868–72.PubMedCrossRef
11.
go back to reference Hsieh HM, Hou RJ, Tsai LC, Wei CS, Liu SW, Huang LH, et al. A highly polymorphic STR locus in Cannabis sativa. Forensic Sci Int. 2003;131(1):53–8.PubMedCrossRef Hsieh HM, Hou RJ, Tsai LC, Wei CS, Liu SW, Huang LH, et al. A highly polymorphic STR locus in Cannabis sativa. Forensic Sci Int. 2003;131(1):53–8.PubMedCrossRef
12.
go back to reference Linacre A, Tobe SS. An overview to the investigative approach to species testing in wildlife forensic science. BMC Investig Genet. 2011;2:2.CrossRef Linacre A, Tobe SS. An overview to the investigative approach to species testing in wildlife forensic science. BMC Investig Genet. 2011;2:2.CrossRef
13.
go back to reference Rasko DA, Worsham PL, Abshire TG, Stanley ST, Bannan JD, Wilson MR, et al. Bacillus anthracis comparative genome analysis in support of the Amerithrax investigation. Proc Natl Acad Sci USA. 2011;108:5027–32.PubMedPubMedCentralCrossRef Rasko DA, Worsham PL, Abshire TG, Stanley ST, Bannan JD, Wilson MR, et al. Bacillus anthracis comparative genome analysis in support of the Amerithrax investigation. Proc Natl Acad Sci USA. 2011;108:5027–32.PubMedPubMedCentralCrossRef
14.
go back to reference NAS report strengthening forensic science in the United States: A path forward. Washington DC: National Research Council, The National Academies Press; 2009. NAS report strengthening forensic science in the United States: A path forward. Washington DC: National Research Council, The National Academies Press; 2009.
15.
go back to reference Amorim A, Budowle B. Handbook of forensic genetics: Biodiversity and heredity in civil and criminal investigations. New Jersey: World Scientific; 2017. p. 1–632. Amorim A, Budowle B. Handbook of forensic genetics: Biodiversity and heredity in civil and criminal investigations. New Jersey: World Scientific; 2017. p. 1–632.
16.
go back to reference Saiki RK, Scharf S, Faloona F, Mullis KB, Horn GT, Erlich HA, et al. Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia. Science. 1985;230:1350–4.PubMedCrossRef Saiki RK, Scharf S, Faloona F, Mullis KB, Horn GT, Erlich HA, et al. Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia. Science. 1985;230:1350–4.PubMedCrossRef
17.
go back to reference Mullis K, Faloona F, Scharf S, Saiki R, Horn G, Erlich H. Specific enzymatic amplification of DNA in vitro: the polymerase chain reaction. Cold Spring Harb Symp Quant Biol. 1986;51(Pt 1):263–73.PubMedCrossRef Mullis K, Faloona F, Scharf S, Saiki R, Horn G, Erlich H. Specific enzymatic amplification of DNA in vitro: the polymerase chain reaction. Cold Spring Harb Symp Quant Biol. 1986;51(Pt 1):263–73.PubMedCrossRef
19.
go back to reference Edwards A, Civitello A, Hammond HA, Caskey CT. DNA typing and genetic mapping with trimeric and tetrameric tandem repeats. Am J Hum Genet. 1991;49:746–56.PubMedPubMedCentral Edwards A, Civitello A, Hammond HA, Caskey CT. DNA typing and genetic mapping with trimeric and tetrameric tandem repeats. Am J Hum Genet. 1991;49:746–56.PubMedPubMedCentral
20.
go back to reference Edwards A, Hammond HA, Jin L, Caskey CT, Chakraborty R. Genetic variation at five trimeric and tetrameric tandem repeat loci in four human population groups. Genomics. 1992;12:241–53.PubMedCrossRef Edwards A, Hammond HA, Jin L, Caskey CT, Chakraborty R. Genetic variation at five trimeric and tetrameric tandem repeat loci in four human population groups. Genomics. 1992;12:241–53.PubMedCrossRef
21.
go back to reference Collins PJ, Hennessy LI, Leibelt CS, Roby RK, Reeder DJ, Foxall PA. Developmental validation of a single-tube amplification of the 13 CODIS loci, D2S1338, D19S433, and amelogenin: the AmpFlSTR® Identifiler® PCR amplification kit. J Forensic Sci. 2004;49:1265–77.PubMedCrossRef Collins PJ, Hennessy LI, Leibelt CS, Roby RK, Reeder DJ, Foxall PA. Developmental validation of a single-tube amplification of the 13 CODIS loci, D2S1338, D19S433, and amelogenin: the AmpFlSTR® Identifiler® PCR amplification kit. J Forensic Sci. 2004;49:1265–77.PubMedCrossRef
22.
go back to reference Krenke BE, Tereba A, Anderson SJ, Buel E, Culhane S, Finis CJ, et al. Validation of a 16-locus fluorescent multiplex system. J Forensic Sci. 2002;47:773–85.PubMedCrossRef Krenke BE, Tereba A, Anderson SJ, Buel E, Culhane S, Finis CJ, et al. Validation of a 16-locus fluorescent multiplex system. J Forensic Sci. 2002;47:773–85.PubMedCrossRef
23.
go back to reference Flores SK, Sun J, King J, Budowle B. Validation of the GlobalFiler™ Express PCR Amplification Kit for the direct amplification of single-source DNA samples on a high-throughput automated workflow. Forens Sci Int Genet. 2014;10:33–9.CrossRef Flores SK, Sun J, King J, Budowle B. Validation of the GlobalFiler™ Express PCR Amplification Kit for the direct amplification of single-source DNA samples on a high-throughput automated workflow. Forens Sci Int Genet. 2014;10:33–9.CrossRef
24.
go back to reference Ensenberger MG, Lenz KA, Matthies LK, Hadinoto GM, Schienman JE, Przech AJ, et al. Developmental validation of the PowerPlex(®) Fusion 6C System. Forensic Sci Int Genet. 2016;21:134–44.PubMedCrossRef Ensenberger MG, Lenz KA, Matthies LK, Hadinoto GM, Schienman JE, Przech AJ, et al. Developmental validation of the PowerPlex(®) Fusion 6C System. Forensic Sci Int Genet. 2016;21:134–44.PubMedCrossRef
25.
go back to reference Smith LM, Sanders JZ, Kaiser RJ, Hughes P, Dodd C, Connell CR, et al. Fluorescence detection in automated DNA sequence analysis. Nature. 1986;321:674–9.CrossRef Smith LM, Sanders JZ, Kaiser RJ, Hughes P, Dodd C, Connell CR, et al. Fluorescence detection in automated DNA sequence analysis. Nature. 1986;321:674–9.CrossRef
26.
go back to reference Hood LE, Hunkapiller MW, Smith LM. Automated DNA sequencing and analysis of the human genome. Genomics. 1987;1:201–12.PubMedCrossRef Hood LE, Hunkapiller MW, Smith LM. Automated DNA sequencing and analysis of the human genome. Genomics. 1987;1:201–12.PubMedCrossRef
27.
go back to reference Budowle B, Moretti TR, Niezgoda SJ, Brown BL. CODIS and PCR-based short tandem repeat loci: Law enforcement tools. In: Second European Symposium on Human Identification 1998. Madison: Promega Corporation; 1998. p. 73–88. Budowle B, Moretti TR, Niezgoda SJ, Brown BL. CODIS and PCR-based short tandem repeat loci: Law enforcement tools. In: Second European Symposium on Human Identification 1998. Madison: Promega Corporation; 1998. p. 73–88.
28.
go back to reference Martin PD, Schmitter H, Schneider PM. A brief history of the formation of DNA databases in forensic science within Europe. Forensic Sci Int. 2001;119:225–31.PubMedCrossRef Martin PD, Schmitter H, Schneider PM. A brief history of the formation of DNA databases in forensic science within Europe. Forensic Sci Int. 2001;119:225–31.PubMedCrossRef
30.
go back to reference Quail MA, Smith M, Coupland P, Otto TD, Harris SR, Connor TR, et al. A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers BMC Genomics. 2012;13:341.PubMed Quail MA, Smith M, Coupland P, Otto TD, Harris SR, Connor TR, et al. A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers BMC Genomics. 2012;13:341.PubMed
31.
go back to reference Jünemann S, Sedlazeck FJ, Prior K, Albersmeier A, John U, Kalinowski J, et al. Updating benchtop sequencing performance comparison. Nat Biotechnol. 2013;31:294–6.PubMedCrossRef Jünemann S, Sedlazeck FJ, Prior K, Albersmeier A, John U, Kalinowski J, et al. Updating benchtop sequencing performance comparison. Nat Biotechnol. 2013;31:294–6.PubMedCrossRef
32.
go back to reference Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, et al. Genome sequencing in microfabricated high-density picolitre reactors. Nature. 2005;437:376–80.PubMedPubMedCentral Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, et al. Genome sequencing in microfabricated high-density picolitre reactors. Nature. 2005;437:376–80.PubMedPubMedCentral
33.
go back to reference Merriman B, Rothberg JM. Progress in ion torrent semiconductor chip based sequencing. Electrophoresis. 2012;33:3397–417.PubMedCrossRef Merriman B, Rothberg JM. Progress in ion torrent semiconductor chip based sequencing. Electrophoresis. 2012;33:3397–417.PubMedCrossRef
34.
36.
go back to reference Budowle B, Schmedes S, Murch RS. The microbial forensics pathway for use of massively-parallel sequencing technologies. The science and applications of microbial genomics. Institute of Medicine. Washington, DC: The National Academies Press; 2013. pp. 117–33. Budowle B, Schmedes S, Murch RS. The microbial forensics pathway for use of massively-parallel sequencing technologies. The science and applications of microbial genomics. Institute of Medicine. Washington, DC: The National Academies Press; 2013. pp. 117–33.
37.
go back to reference Buchard A, Kampmann ML, Poulsen L, Borsting C, Morling N. ISO 17025 validation of a next-generation sequencing assay for relationship testing. Electrophoresis. 2016;37:2822–31.PubMedCrossRef Buchard A, Kampmann ML, Poulsen L, Borsting C, Morling N. ISO 17025 validation of a next-generation sequencing assay for relationship testing. Electrophoresis. 2016;37:2822–31.PubMedCrossRef
38.
go back to reference Churchill JD, Chang J, Ge J, Rajagopalan N, Lagacé R, Liao W, et al. Blind study evaluation illustrates utility of the Ion PGM™ System for use in human identity DNA typing. Croat med J. 2015;56:218–29.PubMedPubMedCentralCrossRef Churchill JD, Chang J, Ge J, Rajagopalan N, Lagacé R, Liao W, et al. Blind study evaluation illustrates utility of the Ion PGM™ System for use in human identity DNA typing. Croat med J. 2015;56:218–29.PubMedPubMedCentralCrossRef
39.
go back to reference Churchill JD, Schmedes SE, King JL, Budowle B. Evaluation of the Illumina® beta version ForenSeq™ DNA Signature Prep Kit for use in genetic profiling. Forensic Int Genet Int. 2015;20:20–9.CrossRef Churchill JD, Schmedes SE, King JL, Budowle B. Evaluation of the Illumina® beta version ForenSeq™ DNA Signature Prep Kit for use in genetic profiling. Forensic Int Genet Int. 2015;20:20–9.CrossRef
40.
go back to reference Churchill JD, King JL, Chakraborty R, Budowle B. Effects of the Ion PGM™ Hi-Q™ sequencing chemistry on sequence data quality. Int J Legal med. 2016;130:1169–80.PubMedCrossRef Churchill JD, King JL, Chakraborty R, Budowle B. Effects of the Ion PGM™ Hi-Q™ sequencing chemistry on sequence data quality. Int J Legal med. 2016;130:1169–80.PubMedCrossRef
41.
go back to reference Davis C, Peters D, Warshauer D, King J, Budowle B. Sequencing the hypervariable regions of human mitochondrial DNA using massively parallel sequencing: Improved methods for DNA samples encountered in forensic testing. Legal Med. 2015;17:123–7.PubMedCrossRef Davis C, Peters D, Warshauer D, King J, Budowle B. Sequencing the hypervariable regions of human mitochondrial DNA using massively parallel sequencing: Improved methods for DNA samples encountered in forensic testing. Legal Med. 2015;17:123–7.PubMedCrossRef
42.
go back to reference Eduardoff M, Santos C, de la Puente M, Gross M, Strobl C, Sobrino B, et al. Inter-laboratory evaluation of SNP-based forensic identification by massively parallel sequencing using the Ion PGM. Forensic Sci Int Genet. 2015;17:110–21.PubMedCrossRef Eduardoff M, Santos C, de la Puente M, Gross M, Strobl C, Sobrino B, et al. Inter-laboratory evaluation of SNP-based forensic identification by massively parallel sequencing using the Ion PGM. Forensic Sci Int Genet. 2015;17:110–21.PubMedCrossRef
43.
go back to reference Fordyce SL, Avila-Arcos MC, Rockenbauer E, Borsting C, Frank-Hansen R, Petersen FT, et al. High-throughput sequencing of core STR loci for forensic genetic investigations using the Roche Genome Sequencer FLX platform. BioTechniques. 2011;51:127–33.PubMed Fordyce SL, Avila-Arcos MC, Rockenbauer E, Borsting C, Frank-Hansen R, Petersen FT, et al. High-throughput sequencing of core STR loci for forensic genetic investigations using the Roche Genome Sequencer FLX platform. BioTechniques. 2011;51:127–33.PubMed
44.
go back to reference Fordyce SL, Mogensen HS, Børsting C, Lagacé RE, Chang CW, Rajagopalan N, et al. Second-generation sequencing of forensic STRs using the Ion Torrent™ HID STR 10-plex and the Ion PGM™. Forensic Sci Int Genet. 2015;14:132–40.PubMedCrossRef Fordyce SL, Mogensen HS, Børsting C, Lagacé RE, Chang CW, Rajagopalan N, et al. Second-generation sequencing of forensic STRs using the Ion Torrent™ HID STR 10-plex and the Ion PGM™. Forensic Sci Int Genet. 2015;14:132–40.PubMedCrossRef
45.
go back to reference Friis SL, Buchard A, Rockenbauer E, Borsting C, Morling N. Introduction of the Python script STRinNGS for analysis of STR regions in FASTQ or BAM files and expansion of the Danish STR sequence database to 11 STRs. Forensic Sci Int Genet. 2016;21:68–75.PubMedCrossRef Friis SL, Buchard A, Rockenbauer E, Borsting C, Morling N. Introduction of the Python script STRinNGS for analysis of STR regions in FASTQ or BAM files and expansion of the Danish STR sequence database to 11 STRs. Forensic Sci Int Genet. 2016;21:68–75.PubMedCrossRef
46.
go back to reference Gettings KB, Kiesler KM, Faith SA, Montano E, Baker CH, Young BA, et al. Sequence variation of 22 autosomal STR loci detected by next generation sequencing. Forensic Sci Int Genet. 2016;21:15–21.PubMedCrossRef Gettings KB, Kiesler KM, Faith SA, Montano E, Baker CH, Young BA, et al. Sequence variation of 22 autosomal STR loci detected by next generation sequencing. Forensic Sci Int Genet. 2016;21:15–21.PubMedCrossRef
47.
go back to reference Hollard C, Keyser C, Delabarde T, Gonzalez A, Vilela Lamego C, Zvenigorosky V, et al. Case report: on the use of the HID-ion AmpliSeq™ Ancestry Panel in a real forensic case. Int J Legal Med. 2016;131:351–8.PubMedCrossRef Hollard C, Keyser C, Delabarde T, Gonzalez A, Vilela Lamego C, Zvenigorosky V, et al. Case report: on the use of the HID-ion AmpliSeq™ Ancestry Panel in a real forensic case. Int J Legal Med. 2016;131:351–8.PubMedCrossRef
48.
go back to reference Hoogenboom J, van der Gaag KJ, de Leeuw RH, Sijen T, de Knijff P, Laros JFJ. FDSTools: a software package for analysis of massively parallel sequencing data with the ability to recognise and correct STR stutter and other PCR or sequencing noise. Forensic Sci Int Genet. 2017;27:27–40.PubMedCrossRef Hoogenboom J, van der Gaag KJ, de Leeuw RH, Sijen T, de Knijff P, Laros JFJ. FDSTools: a software package for analysis of massively parallel sequencing data with the ability to recognise and correct STR stutter and other PCR or sequencing noise. Forensic Sci Int Genet. 2017;27:27–40.PubMedCrossRef
49.
go back to reference Kim EH, Lee HY, Yang IS, Jung SE, Yang WI, Shin KJ. Massively parallel sequencing of 17 commonly used forensic autosomal STRs and amelogenin with small amplicons. Forensic Sci Int Genet. 2016;22:1–7.PubMedCrossRef Kim EH, Lee HY, Yang IS, Jung SE, Yang WI, Shin KJ. Massively parallel sequencing of 17 commonly used forensic autosomal STRs and amelogenin with small amplicons. Forensic Sci Int Genet. 2016;22:1–7.PubMedCrossRef
50.
go back to reference King JL, LaRue BL, Novroski N, Stoljarova M, Seo SB, Zeng X, et al. High-quality and high-throughput massively parallel sequencing of the human mitochondrial genome using the Illumina MiSeq. Forens Sci Int Genet. 2014;12:128–35.CrossRef King JL, LaRue BL, Novroski N, Stoljarova M, Seo SB, Zeng X, et al. High-quality and high-throughput massively parallel sequencing of the human mitochondrial genome using the Illumina MiSeq. Forens Sci Int Genet. 2014;12:128–35.CrossRef
51.
go back to reference King JL, Wendt FR, Sun J, Budowle B. STRait Razor v2s: Advancing sequence-based STR allele reporting and beyond to other marker systems. Forens Sci Int Genet. 2017;29:21–8.CrossRef King JL, Wendt FR, Sun J, Budowle B. STRait Razor v2s: Advancing sequence-based STR allele reporting and beyond to other marker systems. Forens Sci Int Genet. 2017;29:21–8.CrossRef
52.
go back to reference Mikkelsen M, Hansen RF, Hansen AJ, Morling N. Massively parallel pyrose-quencing 454 methodology of the mitochondrial genome in forensic genetics. Forensic Sci Int Genet. 2014;12:30–7.PubMedCrossRef Mikkelsen M, Hansen RF, Hansen AJ, Morling N. Massively parallel pyrose-quencing 454 methodology of the mitochondrial genome in forensic genetics. Forensic Sci Int Genet. 2014;12:30–7.PubMedCrossRef
53.
go back to reference Novroski NM, King JL, Churchill JD, Seah LH, Budowle B. Characterization of genetic sequence variation of 58 STR loci in four major population groups. Forens Sci Int Genet. 2016;25:214–26.CrossRef Novroski NM, King JL, Churchill JD, Seah LH, Budowle B. Characterization of genetic sequence variation of 58 STR loci in four major population groups. Forens Sci Int Genet. 2016;25:214–26.CrossRef
54.
go back to reference Parson W, Strobl C, Huber G, Zimmermann B, Gomes SM, Souto L, et al. Evaluation of next generation mtGenome sequencing using the Ion Torrent Personal Genome Machine (PGM). Forensic Sci Int Genet. 2013;7:543–9.PubMedPubMedCentralCrossRef Parson W, Strobl C, Huber G, Zimmermann B, Gomes SM, Souto L, et al. Evaluation of next generation mtGenome sequencing using the Ion Torrent Personal Genome Machine (PGM). Forensic Sci Int Genet. 2013;7:543–9.PubMedPubMedCentralCrossRef
55.
go back to reference Seo SB, Zeng X, King JL, Larue BL, Assidi M, Al-Qahtani MH, et al. Underlying data for sequencing the mitochondrial genome with the massively parallel sequencing platform Ion Torrent™ PGM™. BMC Genomics. 2015;16(Suppl 1):S4.PubMedPubMedCentralCrossRef Seo SB, Zeng X, King JL, Larue BL, Assidi M, Al-Qahtani MH, et al. Underlying data for sequencing the mitochondrial genome with the massively parallel sequencing platform Ion Torrent™ PGM™. BMC Genomics. 2015;16(Suppl 1):S4.PubMedPubMedCentralCrossRef
56.
go back to reference Van Neste C, Vandewoestyne M, Van Criekinge W, Deforce D, Van Nieuwerburgh F. My-Forensic-Loci-queries (MyFLq) framework for analysis of forensic STR data generated by massive parallel sequencing. Forensic Sci Int Genet. 2014;9:1–8.PubMedCrossRef Van Neste C, Vandewoestyne M, Van Criekinge W, Deforce D, Van Nieuwerburgh F. My-Forensic-Loci-queries (MyFLq) framework for analysis of forensic STR data generated by massive parallel sequencing. Forensic Sci Int Genet. 2014;9:1–8.PubMedCrossRef
57.
go back to reference Wendt FR, Warshauer DH, Zeng X, Churchill JD, Novroski NM, Song B, et al. Massively parallel sequencing of 68 insertion/deletion markers identifies novel microhaplotypes for utility in human identity testing. Forens Sci Int Genet. 2016;25:198–209.CrossRef Wendt FR, Warshauer DH, Zeng X, Churchill JD, Novroski NM, Song B, et al. Massively parallel sequencing of 68 insertion/deletion markers identifies novel microhaplotypes for utility in human identity testing. Forens Sci Int Genet. 2016;25:198–209.CrossRef
58.
go back to reference Wendt F, King JL, Novroski NM, Churchill JD, Ng J, Oldt RF, et al. Flanking region variation of ForenSeq™ DNA Signature Prep Kit STR and SNP loci in Yavapai Native Americans. Forens Sci Int Genet. 2017;28:146–54.CrossRef Wendt F, King JL, Novroski NM, Churchill JD, Ng J, Oldt RF, et al. Flanking region variation of ForenSeq™ DNA Signature Prep Kit STR and SNP loci in Yavapai Native Americans. Forens Sci Int Genet. 2017;28:146–54.CrossRef
59.
go back to reference Zeng X, King J, Hermanson S, Patel J, Storts DR, Budowle B. An evaluation of the PowerSeq™ Auto system: a multiplex short tandem repeat marker kit compatible with massively parallel sequencing. Forens Int Genet Int. 2015;19:172–9.CrossRef Zeng X, King J, Hermanson S, Patel J, Storts DR, Budowle B. An evaluation of the PowerSeq™ Auto system: a multiplex short tandem repeat marker kit compatible with massively parallel sequencing. Forens Int Genet Int. 2015;19:172–9.CrossRef
60.
go back to reference Zeng X, King JL, Stoljarova M, Warshauer DH, LaRue BL, Sajantila A, et al. High sensitivity multiplex short tandem repeat loci analyses with massively parallel sequencing. Forens Sci Int Genet. 2014;16C:38–47. Zeng X, King JL, Stoljarova M, Warshauer DH, LaRue BL, Sajantila A, et al. High sensitivity multiplex short tandem repeat loci analyses with massively parallel sequencing. Forens Sci Int Genet. 2014;16C:38–47.
62.
go back to reference Wilson MR, Polanskey D, Butler J, DiZinno JA, Replogle J, Budowle B. Extraction, PCR amplification, and sequencing of mitochondrial DNA from human hair shafts. BioTechniques. 1995;18:662–9.PubMed Wilson MR, Polanskey D, Butler J, DiZinno JA, Replogle J, Budowle B. Extraction, PCR amplification, and sequencing of mitochondrial DNA from human hair shafts. BioTechniques. 1995;18:662–9.PubMed
63.
go back to reference Cummings CA, Bormann-Chung CA, Fang R, Barker M, Brzoska P, Williamson PC, et al. Accurate, rapid, and high-throughput detection of strain-specific polymorphisms in Bacillus anthracis and Yersinia Pestis by next-generation sequencing. BMC Investigative Genetics. 2010;1:5.CrossRef Cummings CA, Bormann-Chung CA, Fang R, Barker M, Brzoska P, Williamson PC, et al. Accurate, rapid, and high-throughput detection of strain-specific polymorphisms in Bacillus anthracis and Yersinia Pestis by next-generation sequencing. BMC Investigative Genetics. 2010;1:5.CrossRef
64.
go back to reference International Statistical Classification of Diseases and Related Health Problems – 10th Revision (ICD-10). Vol. 2: Instruction Manual. Geneva: World Health Organisation; 1993. International Statistical Classification of Diseases and Related Health Problems – 10th Revision (ICD-10). Vol. 2: Instruction Manual. Geneva: World Health Organisation; 1993.
65.
go back to reference Sajantila A, Palo JU, Ojanperä I, Davis C, Budowle B. Pharmacogenetics in medico-legal context. Forens Sci Int. 2010;203:44–52.CrossRef Sajantila A, Palo JU, Ojanperä I, Davis C, Budowle B. Pharmacogenetics in medico-legal context. Forens Sci Int. 2010;203:44–52.CrossRef
67.
go back to reference Ingelman-Sundberg M. Pharmacogenomics: an opportunity for a safer and more efficient pharmacotherapy. J Intern Med. 2001;250:186–200.PubMedCrossRef Ingelman-Sundberg M. Pharmacogenomics: an opportunity for a safer and more efficient pharmacotherapy. J Intern Med. 2001;250:186–200.PubMedCrossRef
68.
go back to reference Ingelman-Sundberg M. Pharmacogenetics of cytochrome P450 and its applications in drug therapy: the past, present, and future. Trends Pharmacol Sci. 2004;25:193–200.PubMedCrossRef Ingelman-Sundberg M. Pharmacogenetics of cytochrome P450 and its applications in drug therapy: the past, present, and future. Trends Pharmacol Sci. 2004;25:193–200.PubMedCrossRef
69.
go back to reference Ingelman-Sundberg M, Gomez A. The past, present and future of pharmacoepigenomics. Pharmacogenomics. 2010;11:625–7.PubMedCrossRef Ingelman-Sundberg M, Gomez A. The past, present and future of pharmacoepigenomics. Pharmacogenomics. 2010;11:625–7.PubMedCrossRef
70.
go back to reference Eichelbaum M, Spannbrucker N, Steincke B, Dengler HJ. Defective N-oxidation of sparteine in man: a new pharmacogenetic defect. Eur J Clin Pharmacol. 1979;16:183–7.PubMedCrossRef Eichelbaum M, Spannbrucker N, Steincke B, Dengler HJ. Defective N-oxidation of sparteine in man: a new pharmacogenetic defect. Eur J Clin Pharmacol. 1979;16:183–7.PubMedCrossRef
71.
go back to reference Meyer UA. Pharmacogenetics - five decades of therapeutic lessons from genetic diversity. Nat Rev Genet. 2004;5:669–76.PubMedCrossRef Meyer UA. Pharmacogenetics - five decades of therapeutic lessons from genetic diversity. Nat Rev Genet. 2004;5:669–76.PubMedCrossRef
72.
go back to reference Nebert DW, Dalton TP. The role of cytochrome P450 enzymes in endogenous signalling pathways and environmental carcinogenesis. Nat Rev Cancer. 2006;6:947–60.PubMedCrossRef Nebert DW, Dalton TP. The role of cytochrome P450 enzymes in endogenous signalling pathways and environmental carcinogenesis. Nat Rev Cancer. 2006;6:947–60.PubMedCrossRef
73.
go back to reference Ackerman MJ, Tester DJ, Driscoll DJ. Molecular autopsy of sudden unexplained death in the young. Am J Forensic Med Pathol. 2001;22:105–11.PubMedCrossRef Ackerman MJ, Tester DJ, Driscoll DJ. Molecular autopsy of sudden unexplained death in the young. Am J Forensic Med Pathol. 2001;22:105–11.PubMedCrossRef
75.
go back to reference Jannetto PJ, Wong SH, Gock SB, Laleli-Sahin E, Schur BC, Jentzen JM. Pharmacogenomics as molecular autopsy for postmortem forensic toxicology: genotyping cytochrome P450 2D6 for oxycodone cases. J Anal Toxicol. 2001;26:438–47.CrossRef Jannetto PJ, Wong SH, Gock SB, Laleli-Sahin E, Schur BC, Jentzen JM. Pharmacogenomics as molecular autopsy for postmortem forensic toxicology: genotyping cytochrome P450 2D6 for oxycodone cases. J Anal Toxicol. 2001;26:438–47.CrossRef
76.
go back to reference Jin M, Gock SB, Jannetto PJ, Jentzen JM, Wong SH. Pharmacogenomics as molecular autopsy for forensic toxicology: genotyping cytochrome P450 3A4*1B and 3A5*3 for 25 fentanyl cases. J Anal Toxicol. 2005;29:590–8.PubMedCrossRef Jin M, Gock SB, Jannetto PJ, Jentzen JM, Wong SH. Pharmacogenomics as molecular autopsy for forensic toxicology: genotyping cytochrome P450 3A4*1B and 3A5*3 for 25 fentanyl cases. J Anal Toxicol. 2005;29:590–8.PubMedCrossRef
77.
go back to reference Larsen MK, Nissen PH, Berge KE, Leren TP, Kristensen IB, Jensen HK, et al. Molecular autopsy in young sudden cardiac death victims with suspected cardiomyopathy. Forensic Sci Int. 2012;219:33–8.PubMedCrossRef Larsen MK, Nissen PH, Berge KE, Leren TP, Kristensen IB, Jensen HK, et al. Molecular autopsy in young sudden cardiac death victims with suspected cardiomyopathy. Forensic Sci Int. 2012;219:33–8.PubMedCrossRef
78.
go back to reference Madea B, Preuss J. Medical malpractice as reflected by the forensic evaluation of 4450 autopsies. Forensic Sci Int. 2009;190:58–66.PubMedCrossRef Madea B, Preuss J. Medical malpractice as reflected by the forensic evaluation of 4450 autopsies. Forensic Sci Int. 2009;190:58–66.PubMedCrossRef
79.
go back to reference Santori M, Blanco-Verea A, Gil R, Cortis J, Becker K, Schneider PM, et al. Broad-based molecular autopsy: a potential tool to investigate the involvement of subtle cardiac conditions in sudden unexpected death in infancy and early childhood. Arch Dis Child. 2015;100:952–6.PubMedCrossRef Santori M, Blanco-Verea A, Gil R, Cortis J, Becker K, Schneider PM, et al. Broad-based molecular autopsy: a potential tool to investigate the involvement of subtle cardiac conditions in sudden unexpected death in infancy and early childhood. Arch Dis Child. 2015;100:952–6.PubMedCrossRef
80.
go back to reference Meletis JC. Favism: a brief history from the “abstain from beans” of Pythagoras to the present. Arch Hellenic Med. 2011;29:258–63. Meletis JC. Favism: a brief history from the “abstain from beans” of Pythagoras to the present. Arch Hellenic Med. 2011;29:258–63.
81.
go back to reference Luzzatto L, Nannelli C, Notaro R. Glucose-6-Phosphate Dehydrogenase deficiency. Hematol Oncol Clin North Am. 2016;30:373–93.PubMedCrossRef Luzzatto L, Nannelli C, Notaro R. Glucose-6-Phosphate Dehydrogenase deficiency. Hematol Oncol Clin North Am. 2016;30:373–93.PubMedCrossRef
83.
go back to reference Smith RL. Introduction: human genetic variations in oxidative drug metabolism. Xenobiotica. 1986;16:361–5.CrossRef Smith RL. Introduction: human genetic variations in oxidative drug metabolism. Xenobiotica. 1986;16:361–5.CrossRef
84.
go back to reference Koren G, Cairns J, Chitayat D, Gaedigk A, Leeder SJ. Pharmacogenetics of morphine poisoning in a breastfed neonate of a codeine-prescribed mother. Lancet. 2006;368:704.PubMedCrossRef Koren G, Cairns J, Chitayat D, Gaedigk A, Leeder SJ. Pharmacogenetics of morphine poisoning in a breastfed neonate of a codeine-prescribed mother. Lancet. 2006;368:704.PubMedCrossRef
85.
go back to reference Ingelman-Sudberg M. Genetic polymorphisms of cytochrome P450 2D6 (CYP2D6): clinical consequences, evolutionary aspects and functional diversity. Pharmacogenomics J. 2005;5:6–13.CrossRef Ingelman-Sudberg M. Genetic polymorphisms of cytochrome P450 2D6 (CYP2D6): clinical consequences, evolutionary aspects and functional diversity. Pharmacogenomics J. 2005;5:6–13.CrossRef
86.
go back to reference Ingelman-Sundberg M. Human drug metabolising cytochrome P450 enzymes: properties and polymorphisms. Naunyn Schmiedeberg’s Arch Pharmacol. 2004;369:89–104.CrossRef Ingelman-Sundberg M. Human drug metabolising cytochrome P450 enzymes: properties and polymorphisms. Naunyn Schmiedeberg’s Arch Pharmacol. 2004;369:89–104.CrossRef
87.
go back to reference Zhou SF, Di YM, Chan E, Du YM, Chow VD, Xue CC, et al. Clinical pharmacogenetics and potential application in personalized medicine. Curr Drug Metab. 2008;9:738–84.PubMedCrossRef Zhou SF, Di YM, Chan E, Du YM, Chow VD, Xue CC, et al. Clinical pharmacogenetics and potential application in personalized medicine. Curr Drug Metab. 2008;9:738–84.PubMedCrossRef
88.
go back to reference Hiratsuka M. In vitro assessment of the allelic variants of cytochrome P450. Drug Metab Pharmacokinet. 2012;27:68–84.PubMedCrossRef Hiratsuka M. In vitro assessment of the allelic variants of cytochrome P450. Drug Metab Pharmacokinet. 2012;27:68–84.PubMedCrossRef
89.
go back to reference Sistonen J, Madadi P, Ross CJ, Yazdanpanah M, Lee JW, Landsmeer ML, et al. Prediction of codeine toxicity in infants and their mothers using a novel combination of maternal genetic markers. Clin Pharmacol Ther. 2012;91:692–9.PubMedCrossRef Sistonen J, Madadi P, Ross CJ, Yazdanpanah M, Lee JW, Landsmeer ML, et al. Prediction of codeine toxicity in infants and their mothers using a novel combination of maternal genetic markers. Clin Pharmacol Ther. 2012;91:692–9.PubMedCrossRef
90.
go back to reference Weber A, Szalai R, Sipeky C, Magyari L, Melegh M, Jaromi L, et al. Increased prevalence of functional minor allele variants of drug metabolizing CYP2B6 and CYP2D6 genes in Roma population samples. Pharmacol Rep. 2015;67:460–4.PubMedCrossRef Weber A, Szalai R, Sipeky C, Magyari L, Melegh M, Jaromi L, et al. Increased prevalence of functional minor allele variants of drug metabolizing CYP2B6 and CYP2D6 genes in Roma population samples. Pharmacol Rep. 2015;67:460–4.PubMedCrossRef
91.
go back to reference Gaedigk A, Simon SD, Pearce RE, Bradford LD, Kennedy MJ, Leeder JS. The CYP2D6 activity score: translating genotype information into a qualitative measure of phenotype. Clin Pharmacol Ther. 2008;83:234–42.PubMedCrossRef Gaedigk A, Simon SD, Pearce RE, Bradford LD, Kennedy MJ, Leeder JS. The CYP2D6 activity score: translating genotype information into a qualitative measure of phenotype. Clin Pharmacol Ther. 2008;83:234–42.PubMedCrossRef
92.
go back to reference Gaedigk A, Sangkuhl K, Whirl-Carrillo M, Klein T, Leeder JS. Prediction of CYP2D6 phenotype from genotype across world populations. Genet Med. 2017;19:69–76.PubMedCrossRef Gaedigk A, Sangkuhl K, Whirl-Carrillo M, Klein T, Leeder JS. Prediction of CYP2D6 phenotype from genotype across world populations. Genet Med. 2017;19:69–76.PubMedCrossRef
93.
go back to reference Druid H, Holmgren P, Carlsson B, Ahlner J. Cytochrome P450 2D6 (CYP2D6) genotyping on postmortem blood as a supplementary tool for interpretation of forensic toxicological results. Forensic Sci Int. 1999;99:25–34.PubMedCrossRef Druid H, Holmgren P, Carlsson B, Ahlner J. Cytochrome P450 2D6 (CYP2D6) genotyping on postmortem blood as a supplementary tool for interpretation of forensic toxicological results. Forensic Sci Int. 1999;99:25–34.PubMedCrossRef
94.
go back to reference Levo A, Koski A, Ojanpera I, Vuori E, Sajantila A. Post-mortem SNP analysis of CYP2D6 gene reveals correlation between genotype and opioid drug (tramadol) metabolite ratios in blood. Forensic Sci Int. 2003;135:9–15.PubMedCrossRef Levo A, Koski A, Ojanpera I, Vuori E, Sajantila A. Post-mortem SNP analysis of CYP2D6 gene reveals correlation between genotype and opioid drug (tramadol) metabolite ratios in blood. Forensic Sci Int. 2003;135:9–15.PubMedCrossRef
95.
go back to reference Wendt FR, Sajantila A, Chakraborty R, Budowle B. Global genetic variation of select opiate metabolism genes in self-reported healthy individuals. Pharmacogenomics J (in press). doi:10.1038/tpj.2017.13. Wendt FR, Sajantila A, Chakraborty R, Budowle B. Global genetic variation of select opiate metabolism genes in self-reported healthy individuals. Pharmacogenomics J (in press). doi:10.​1038/​tpj.​2017.​13.
96.
go back to reference Wendt FR, Sajantila A, Moura-Neto RS, Woerner AE, Budowle B. Full-gene haplotypes refine CYP2D6 metabolizer phenotype inferences. Eur Hum Genet. (submitted). Wendt FR, Sajantila A, Moura-Neto RS, Woerner AE, Budowle B. Full-gene haplotypes refine CYP2D6 metabolizer phenotype inferences. Eur Hum Genet. (submitted).
97.
go back to reference Budowle B, Schutzer SE, Einseln A, Kelley LC, Walsh AC, Smith JAL, et al. Building microbial forensics as a response to Bioterrorism. Science. 2003;301:1852–3.PubMedCrossRef Budowle B, Schutzer SE, Einseln A, Kelley LC, Walsh AC, Smith JAL, et al. Building microbial forensics as a response to Bioterrorism. Science. 2003;301:1852–3.PubMedCrossRef
99.
go back to reference Charles RR, Bullard J, Webster DR, Kasarskis A, Peluso P, Paxinos EE, et al. The origin of the Haitian cholera outbreak strain. N Engl J med. 2011;364:33–42.PubMedCrossRef Charles RR, Bullard J, Webster DR, Kasarskis A, Peluso P, Paxinos EE, et al. The origin of the Haitian cholera outbreak strain. N Engl J med. 2011;364:33–42.PubMedCrossRef
100.
go back to reference Grad YH, Lipsitch M, Feldgarden M, Arachchi HM, Cerqueira GC, Fitzgerald M, et al. Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011. Proc Natl Acad Sci USA. 2012;109:3065–70.PubMedPubMedCentralCrossRef Grad YH, Lipsitch M, Feldgarden M, Arachchi HM, Cerqueira GC, Fitzgerald M, et al. Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011. Proc Natl Acad Sci USA. 2012;109:3065–70.PubMedPubMedCentralCrossRef
101.
go back to reference Hasan NA, Choi SY, Eppinger M, Clark PW, Chen A, Alam M, et al. Genomic diversity of 2010 Haitian cholera outbreak strains. Proc Natl Acad Sci USA. 2012;109:E2010–7.PubMedPubMedCentralCrossRef Hasan NA, Choi SY, Eppinger M, Clark PW, Chen A, Alam M, et al. Genomic diversity of 2010 Haitian cholera outbreak strains. Proc Natl Acad Sci USA. 2012;109:E2010–7.PubMedPubMedCentralCrossRef
102.
go back to reference Hendriksen RS, Price LB, Schupp JM, Gillece JD, Kaas RS, Engelthaler DM, et al. Population genetics of Vibrio cholerae from Nepal in 2010: evidence on the origin of the Haitian outbreak. mBio. 2011;2:e00157–11.PubMedPubMedCentralCrossRef Hendriksen RS, Price LB, Schupp JM, Gillece JD, Kaas RS, Engelthaler DM, et al. Population genetics of Vibrio cholerae from Nepal in 2010: evidence on the origin of the Haitian outbreak. mBio. 2011;2:e00157–11.PubMedPubMedCentralCrossRef
103.
go back to reference Ou CY, Ciesielski CA, Myers G, Bandea CI, Luo CC, Korber BT, et al. Molecular epidemiology of HIV transmission in a dental practice. Science. 1992;256:1165–71.PubMedCrossRef Ou CY, Ciesielski CA, Myers G, Bandea CI, Luo CC, Korber BT, et al. Molecular epidemiology of HIV transmission in a dental practice. Science. 1992;256:1165–71.PubMedCrossRef
104.
go back to reference Metzker ML, Mindell DP, Liu XM, Ptak RG, Gibbs RA, Hillis DM. Molecular evidence of HIV-1 transmission in a criminal case. Proc Natl Acad Sci USA. 2002;99:14292–7.PubMedPubMedCentralCrossRef Metzker ML, Mindell DP, Liu XM, Ptak RG, Gibbs RA, Hillis DM. Molecular evidence of HIV-1 transmission in a criminal case. Proc Natl Acad Sci USA. 2002;99:14292–7.PubMedPubMedCentralCrossRef
105.
go back to reference González-Candelas F, Bracho MA, Wróbel B, Moya A. Molecular evolution in court: analysis of a large hepatitis C virus outbreak from an evolving source. BMC Biol. 2013;11:76.PubMedPubMedCentralCrossRef González-Candelas F, Bracho MA, Wróbel B, Moya A. Molecular evolution in court: analysis of a large hepatitis C virus outbreak from an evolving source. BMC Biol. 2013;11:76.PubMedPubMedCentralCrossRef
106.
go back to reference Pechal JL, Crippen TL, Benbow ME, Tarone AM, Dowd S, Tomberlin JK. The potential use of bacterial community succession in forensics as described by high throughput metagenomic sequencing. Int J Legal Med. 2014;128:193–205.PubMedCrossRef Pechal JL, Crippen TL, Benbow ME, Tarone AM, Dowd S, Tomberlin JK. The potential use of bacterial community succession in forensics as described by high throughput metagenomic sequencing. Int J Legal Med. 2014;128:193–205.PubMedCrossRef
107.
go back to reference Jesmok EM, Hopkins JM, Foran DR. Next-generation sequencing of the bacterial 16S rRNA gene for forensic soil comparison: a feasibility study. J Forens Sci. 2016;61:607–17.CrossRef Jesmok EM, Hopkins JM, Foran DR. Next-generation sequencing of the bacterial 16S rRNA gene for forensic soil comparison: a feasibility study. J Forens Sci. 2016;61:607–17.CrossRef
108.
go back to reference Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, et al. Initial sequencing and analysis of the human genome. Nature. 2001;409:860–92.PubMedCrossRef Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, et al. Initial sequencing and analysis of the human genome. Nature. 2001;409:860–92.PubMedCrossRef
109.
go back to reference Human Microbiome Project Consortium. Structure, function and diversity of the healthy human microbiome. Nature. 2012;486:207–14.CrossRef Human Microbiome Project Consortium. Structure, function and diversity of the healthy human microbiome. Nature. 2012;486:207–14.CrossRef
110.
go back to reference Human Microbiome Project Consortium. A framework for human microbiome research. Nature. 2012;486:215–21.CrossRef Human Microbiome Project Consortium. A framework for human microbiome research. Nature. 2012;486:215–21.CrossRef
111.
go back to reference Luckey T. Introduction to intestinal microecology. Am J Clin Nutr. 1972;25:1292–4.PubMed Luckey T. Introduction to intestinal microecology. Am J Clin Nutr. 1972;25:1292–4.PubMed
112.
113.
115.
go back to reference Grice EA, Kong HH, Conlan S, Deming CB, Davis J, Young AC, et al. Topographical and temporal diversity of the human skin microbiome. Science. 2009;324:1190–2.PubMedPubMedCentralCrossRef Grice EA, Kong HH, Conlan S, Deming CB, Davis J, Young AC, et al. Topographical and temporal diversity of the human skin microbiome. Science. 2009;324:1190–2.PubMedPubMedCentralCrossRef
116.
go back to reference Goga H. Comparison of bacterial DNA profiles of footwear insoles and soles of feet for the forensic discrimination of footwear owners. Int J Legal Med. 2012;126:815–23.PubMedCrossRef Goga H. Comparison of bacterial DNA profiles of footwear insoles and soles of feet for the forensic discrimination of footwear owners. Int J Legal Med. 2012;126:815–23.PubMedCrossRef
117.
go back to reference Fierer N, Hamady M, Lauber CL, Knight R. The influence of sex, handedness, and washing on the diversity of hand surface bacteria. Proc Natl Acad Sci USA. 2008;105:17994–9.PubMedPubMedCentralCrossRef Fierer N, Hamady M, Lauber CL, Knight R. The influence of sex, handedness, and washing on the diversity of hand surface bacteria. Proc Natl Acad Sci USA. 2008;105:17994–9.PubMedPubMedCentralCrossRef
118.
go back to reference Akutsu T, Motani H, Watanabe K, Iwase H, Sakurada K. Detection of bacterial 16S ribosomal RNA genes for forensic identification of vaginal fluid. Legal Med. 2012;14:160–2.PubMedCrossRef Akutsu T, Motani H, Watanabe K, Iwase H, Sakurada K. Detection of bacterial 16S ribosomal RNA genes for forensic identification of vaginal fluid. Legal Med. 2012;14:160–2.PubMedCrossRef
119.
go back to reference Doi M, Gamo S, Okiura T, Nishimukai H, Asano M. A simple identification method for vaginal secretions using relative quantification of Lactobacillus DNA. Forensic Sci Int Genet. 2014;12:93–9.PubMedCrossRef Doi M, Gamo S, Okiura T, Nishimukai H, Asano M. A simple identification method for vaginal secretions using relative quantification of Lactobacillus DNA. Forensic Sci Int Genet. 2014;12:93–9.PubMedCrossRef
120.
go back to reference Fleming RI, Harbison S. The use of bacteria for the identification of vaginal secretions. Forensic Sci Int Genet. 2010;4:311–5.PubMedCrossRef Fleming RI, Harbison S. The use of bacteria for the identification of vaginal secretions. Forensic Sci Int Genet. 2010;4:311–5.PubMedCrossRef
121.
go back to reference Nakanishi H, Kido A, Ohmori T, Takada A, Hara M, Adachi N, et al. A novel method for the identification of saliva by detecting oral streptococci using PCR. Forensic Sci Int. 2009;183:20–3.PubMedCrossRef Nakanishi H, Kido A, Ohmori T, Takada A, Hara M, Adachi N, et al. A novel method for the identification of saliva by detecting oral streptococci using PCR. Forensic Sci Int. 2009;183:20–3.PubMedCrossRef
122.
go back to reference Choi A, Shin K-J, Yang WI, Lee HY. Body fluid identification by integrated analysis of DNA methylation and body fluid-specific microbial DNA. Int J Legal Med. 2014;128:33–41.PubMedCrossRef Choi A, Shin K-J, Yang WI, Lee HY. Body fluid identification by integrated analysis of DNA methylation and body fluid-specific microbial DNA. Int J Legal Med. 2014;128:33–41.PubMedCrossRef
123.
go back to reference Scheidegger C, Zimmerli W. Infectious complications in drug addicts: seven-year review of 269 hospitalized narcotics abusers in Switzerland. Rev Infect Dis. 1989;11:486–93.PubMedCrossRef Scheidegger C, Zimmerli W. Infectious complications in drug addicts: seven-year review of 269 hospitalized narcotics abusers in Switzerland. Rev Infect Dis. 1989;11:486–93.PubMedCrossRef
124.
go back to reference Kluytmans J, van Belkum A, Verbrugh H. Nasal carriage of Staphylococcus aureus: epidemiology, underlying mechanisms, and associated risks. Clin Microbiol Rev. 1997;10:505–20.PubMedPubMedCentral Kluytmans J, van Belkum A, Verbrugh H. Nasal carriage of Staphylococcus aureus: epidemiology, underlying mechanisms, and associated risks. Clin Microbiol Rev. 1997;10:505–20.PubMedPubMedCentral
125.
go back to reference Quagliarello B, Cespedes C, Miller M, Toro A, Vavagiakis P, Klein RS, et al. Strains of Staphylococcus aureus obtained from drug-use networks are closely linked. Clin Infect Dis. 2002;35:671–7.PubMedCrossRef Quagliarello B, Cespedes C, Miller M, Toro A, Vavagiakis P, Klein RS, et al. Strains of Staphylococcus aureus obtained from drug-use networks are closely linked. Clin Infect Dis. 2002;35:671–7.PubMedCrossRef
126.
go back to reference Machin GA. Some causes of genotypic and phenotypic discordance in monozygotic twin pairs. Amer J Med Genet. 1996;61:216–28.CrossRef Machin GA. Some causes of genotypic and phenotypic discordance in monozygotic twin pairs. Amer J Med Genet. 1996;61:216–28.CrossRef
127.
go back to reference Weber-Lehhmann J, Schilling E, Gradl G, Richter DC, Wiehler J, Rolf B. Finding the needle in the haystack: Differentiating 'identical' twins in paternity testing and forensics by ultra-deep next generation sequencing. Forens Sci Int Genet. 2014;9:42–6.CrossRef Weber-Lehhmann J, Schilling E, Gradl G, Richter DC, Wiehler J, Rolf B. Finding the needle in the haystack: Differentiating 'identical' twins in paternity testing and forensics by ultra-deep next generation sequencing. Forens Sci Int Genet. 2014;9:42–6.CrossRef
Metadata
Title
Increasing the reach of forensic genetics with massively parallel sequencing
Authors
Bruce Budowle
Sarah E. Schmedes
Frank R. Wendt
Publication date
01-09-2017
Publisher
Springer US
Published in
Forensic Science, Medicine and Pathology / Issue 3/2017
Print ISSN: 1547-769X
Electronic ISSN: 1556-2891
DOI
https://doi.org/10.1007/s12024-017-9882-5

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