Skip to main content
Top
Published in: International Journal of Legal Medicine 5/2020

01-09-2020 | Population Data

Genomic portrait of Odisha, India drawn by using 21 autosomal STR markers

Authors: Subhasish Sahoo, Rashmita Samal, Suchismeeta Behera, Aruna Kumar Swain, Sumit Biswas, Pankaj Shrivastava, R. K. Kumawat, Gyaneshwer Chaubey, Hirak Ranjan Dash

Published in: International Journal of Legal Medicine | Issue 5/2020

Login to get access

Abstract

In order to find out the genetic diversity in the eastern Indian population of Odisha consisting of various linguistic and ethnic groups, we undertook a study on 508 unrelated healthy individuals belonging to Odisha, India. We assessed genetic variation and compared the data with published literature of Indian population consisting of different ethnic groups from different geographical areas using 21 autosomal STR markers. The most polymorphic and discriminatory STR locus in the studied population was found to be SE33 with the calculated values of 0.94 and 0.991 respectively for both the parameters. The combined power of discrimination (CPD) and combined power of exclusion (CPE) were found to be 1 and 0.999999999704865 respectively. The combined probability of match (CPm) and combined paternity index (CPI) for all 21 autosomal STR loci were found to be 8.01 × 10−26 and 3.45 × 109 respectively. Though, the studied eastern Indian population of Odisha shared its closest genetic affinity with nearest Indian geographical regions, i.e., the population of Jharkhand which is geographically located in eastern India as well as the Central Indian population.
Appendix
Available only for authorised users
Literature
2.
go back to reference Peakall R, Smouse PE (2006) GENALEX 6: genetic analysis in excel. Population genetic software for teaching and research. Mol Ecol Notes 6:288–295CrossRef Peakall R, Smouse PE (2006) GENALEX 6: genetic analysis in excel. Population genetic software for teaching and research. Mol Ecol Notes 6:288–295CrossRef
3.
go back to reference Tereba A (1999) Tools for analysis of population statistics. Profiles DNA 2:14–16 Tereba A (1999) Tools for analysis of population statistics. Profiles DNA 2:14–16
4.
go back to reference Excoffier L, Laval G, Schneider S (2005) Arlequinver 3.0: an integrated software package for population genetics data analysis. Evol Bioinformatics Online 1:47–50 Excoffier L, Laval G, Schneider S (2005) Arlequinver 3.0: an integrated software package for population genetics data analysis. Evol Bioinformatics Online 1:47–50
5.
go back to reference Takezaki N, Nei M, Tamura K (2009) POPTREE2: software for constructing population trees from allele frequency data and computing other population statistics with windows-interface. Mol Biol Evol 27:747–752PubMedPubMedCentralCrossRef Takezaki N, Nei M, Tamura K (2009) POPTREE2: software for constructing population trees from allele frequency data and computing other population statistics with windows-interface. Mol Biol Evol 27:747–752PubMedPubMedCentralCrossRef
6.
go back to reference Hammer O, Harper DAT, Ryan PD (2001) PAST: palaeontological statistics software package for education and data analysis. Palaeontol Electron 4:9 Hammer O, Harper DAT, Ryan PD (2001) PAST: palaeontological statistics software package for education and data analysis. Palaeontol Electron 4:9
7.
go back to reference Bindu HG, Trivedi R, Kashyap VK (2005) Genotypic polymorphisms at fifteen tetranucleotides and two pentanucleotide repeat locus in four tribal populations of Andhra Pradesh, southern India. J Forensic Sci 50(4):978–983PubMedCrossRef Bindu HG, Trivedi R, Kashyap VK (2005) Genotypic polymorphisms at fifteen tetranucleotides and two pentanucleotide repeat locus in four tribal populations of Andhra Pradesh, southern India. J Forensic Sci 50(4):978–983PubMedCrossRef
8.
go back to reference Banerjee J, Trivedi R, Kashyap VK (2005) Polymorphism at 15 short tandem repeat AmpFlSTR Identifiler locus in three aboriginal populations of India: an assessment in human identification India. J Forensic Sci 50(5):1229–1234PubMedCrossRef Banerjee J, Trivedi R, Kashyap VK (2005) Polymorphism at 15 short tandem repeat AmpFlSTR Identifiler locus in three aboriginal populations of India: an assessment in human identification India. J Forensic Sci 50(5):1229–1234PubMedCrossRef
9.
go back to reference Singh A, Trivedi R, Kashyap VK (2006) Genetic polymorphism at 15 tetrameric short tandem repeat locus in four aboriginal tribal populations of Bengal. J Forensic Sci 51(1):183–187PubMedCrossRef Singh A, Trivedi R, Kashyap VK (2006) Genetic polymorphism at 15 tetrameric short tandem repeat locus in four aboriginal tribal populations of Bengal. J Forensic Sci 51(1):183–187PubMedCrossRef
10.
go back to reference Chaudhari RR, Dahiya MS (2014) Genetic diversity of 15 autosomal short tandem repeats locus using the AmpFLSTR® Identifiler™ kit in a Bhil tribe population from Gujarat state, India. Indian J Hum Genet 20(2):148–152PubMedPubMedCentralCrossRef Chaudhari RR, Dahiya MS (2014) Genetic diversity of 15 autosomal short tandem repeats locus using the AmpFLSTR® Identifiler™ kit in a Bhil tribe population from Gujarat state, India. Indian J Hum Genet 20(2):148–152PubMedPubMedCentralCrossRef
11.
go back to reference Ghosh T, Kalpana D, Mukerjee S, Mukherjee M, Sharma AK, Nath S, Rathod VR, Thakar MK, Jha GN (2011) Genetic diversity of autosomal STRs in eleven populations of India. Forensic Sci Int Genet 5(3):259–261PubMedCrossRef Ghosh T, Kalpana D, Mukerjee S, Mukherjee M, Sharma AK, Nath S, Rathod VR, Thakar MK, Jha GN (2011) Genetic diversity of autosomal STRs in eleven populations of India. Forensic Sci Int Genet 5(3):259–261PubMedCrossRef
13.
go back to reference Imam J, Reyaz R, Singh RS, Bapuly AK, Shrivastava P (2017) Genomic portrait of population of Jharkhand, India, drawn with 15 autosomal STRs and 17 Y-STRs. Int J Legal Med 130(5):1185–1186 Imam J, Reyaz R, Singh RS, Bapuly AK, Shrivastava P (2017) Genomic portrait of population of Jharkhand, India, drawn with 15 autosomal STRs and 17 Y-STRs. Int J Legal Med 130(5):1185–1186
14.
go back to reference Giroti R. Talwar, (2013) Diversity and differentiation in Khatris, Banias, and Jat sikhs of Punjab; a study with forensic microsatellites. Ind J Phys Anthrop Hum Genet 32(2):309–328 Giroti R. Talwar, (2013) Diversity and differentiation in Khatris, Banias, and Jat sikhs of Punjab; a study with forensic microsatellites. Ind J Phys Anthrop Hum Genet 32(2):309–328
15.
go back to reference Shrivastava P, Jain T, Trivedi VB (2016) Genetic portrait of Oraon Indian tribe drawn with 15 autosomal and 17 Y chromosomal STR markers. Int J Legal Med 130(5):1185–1186PubMedCrossRef Shrivastava P, Jain T, Trivedi VB (2016) Genetic portrait of Oraon Indian tribe drawn with 15 autosomal and 17 Y chromosomal STR markers. Int J Legal Med 130(5):1185–1186PubMedCrossRef
Metadata
Title
Genomic portrait of Odisha, India drawn by using 21 autosomal STR markers
Authors
Subhasish Sahoo
Rashmita Samal
Suchismeeta Behera
Aruna Kumar Swain
Sumit Biswas
Pankaj Shrivastava
R. K. Kumawat
Gyaneshwer Chaubey
Hirak Ranjan Dash
Publication date
01-09-2020
Publisher
Springer Berlin Heidelberg
Published in
International Journal of Legal Medicine / Issue 5/2020
Print ISSN: 0937-9827
Electronic ISSN: 1437-1596
DOI
https://doi.org/10.1007/s00414-020-02281-5

Other articles of this Issue 5/2020

International Journal of Legal Medicine 5/2020 Go to the issue