Developmental score of the infant brain: characterizing diffusion MRI in term- and preterm-born infants

go back to reference Akazawa K, Chang L, Yamakawa R, Hayama S, Buchthal S, Alicata D, Andres T, Castillo D, Oishi K, Skranes J, Ernst T, Oishi K (2016) Probabilistic maps of the white matter tracts with known associated functions on the neonatal brain atlas: application to evaluate longitudinal developmental trajectories in term-born and preterm-born infants. Neuroimage 128:167–179PubMed Akazawa K, Chang L, Yamakawa R, Hayama S, Buchthal S, Alicata D, Andres T, Castillo D, Oishi K, Skranes J, Ernst T, Oishi K (2016) Probabilistic maps of the white matter tracts with known associated functions on the neonatal brain atlas: application to evaluate longitudinal developmental trajectories in term-born and preterm-born infants. Neuroimage 128:167–179PubMed

go back to reference Als H, Duffy FH, McAnulty GB, Rivkin MJ, Vajapeyam S, Mulkern RV, Warfield SK, Huppi PS, Butler SC, Conneman N, Fischer C, Eichenwald EC (2004) Early experience alters brain function and structure. Pediatrics 113:846–857PubMed Als H, Duffy FH, McAnulty GB, Rivkin MJ, Vajapeyam S, Mulkern RV, Warfield SK, Huppi PS, Butler SC, Conneman N, Fischer C, Eichenwald EC (2004) Early experience alters brain function and structure. Pediatrics 113:846–857PubMed

go back to reference Anjari M, Srinivasan L, Allsop JM, Hajnal JV, Rutherford MA, Edwards AD, Counsell SJ (2007) Diffusion tensor imaging with tract-based spatial statistics reveals local white matter abnormalities in preterm infants. Neuroimage 35:1021–1027PubMed Anjari M, Srinivasan L, Allsop JM, Hajnal JV, Rutherford MA, Edwards AD, Counsell SJ (2007) Diffusion tensor imaging with tract-based spatial statistics reveals local white matter abnormalities in preterm infants. Neuroimage 35:1021–1027PubMed

go back to reference Baldoli C, Scola E, Della Rosa PA, Pontesilli S, Longaretti R, Poloniato A, Scotti R, Blasi V, Cirillo S, Iadanza A, Rovelli R, Barera G, Scifo P (2015) Maturation of preterm newborn brains: a fMRI–DTI study of auditory processing of linguistic stimuli and white matter development. Brain Struct Funct 220:3733–3751PubMed Baldoli C, Scola E, Della Rosa PA, Pontesilli S, Longaretti R, Poloniato A, Scotti R, Blasi V, Cirillo S, Iadanza A, Rovelli R, Barera G, Scifo P (2015) Maturation of preterm newborn brains: a fMRI–DTI study of auditory processing of linguistic stimuli and white matter development. Brain Struct Funct 220:3733–3751PubMed

go back to reference Barkovich AJ, Kjos BO, Jackson DE Jr, Norman D (1988) Normal maturation of the neonatal and infant brain: MR imaging at 1.5 T. Radiology 166:173–180PubMed Barkovich AJ, Kjos BO, Jackson DE Jr, Norman D (1988) Normal maturation of the neonatal and infant brain: MR imaging at 1.5 T. Radiology 166:173–180PubMed

go back to reference Basser PJ, Mattiello J, LeBihan D (1994) MR diffusion tensor spectroscopy and imaging. Biophys J 66:259–267PubMedPubMedCentral Basser PJ, Mattiello J, LeBihan D (1994) MR diffusion tensor spectroscopy and imaging. Biophys J 66:259–267PubMedPubMedCentral

go back to reference Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate—a practical and powerful approach to multiple testing. J R Stat Soc Ser B Stat Methodol 57:289–300 Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate—a practical and powerful approach to multiple testing. J R Stat Soc Ser B Stat Methodol 57:289–300

go back to reference Bilgel M, Prince JL, Wong DF, Resnick SM, Jedynak BM (2016) A multivariate nonlinear mixed effects model for longitudinal image analysis: application to amyloid imaging. Neuroimage 134:658–670PubMed Bilgel M, Prince JL, Wong DF, Resnick SM, Jedynak BM (2016) A multivariate nonlinear mixed effects model for longitudinal image analysis: application to amyloid imaging. Neuroimage 134:658–670PubMed

go back to reference Brain Development Cooperative G (2012) Total and regional brain volumes in a population-based normative sample from 4 to 18 years: the NIH MRI Study of Normal Brain Development. Cereb Cortex 22:1–12 Brain Development Cooperative G (2012) Total and regional brain volumes in a population-based normative sample from 4 to 18 years: the NIH MRI Study of Normal Brain Development. Cereb Cortex 22:1–12

go back to reference Brossard-Racine M, McCarter R, Murnick J, Tinkleman L, Vezina G, Limperopoulos C (2019) Early extra-uterine exposure alters regional cerebellar growth in infants born preterm. Neuroimage Clin 21:101646PubMed Brossard-Racine M, McCarter R, Murnick J, Tinkleman L, Vezina G, Limperopoulos C (2019) Early extra-uterine exposure alters regional cerebellar growth in infants born preterm. Neuroimage Clin 21:101646PubMed

go back to reference Brown TT, Kuperman JM, Chung Y, Erhart M, McCabe C, Hagler DJ Jr, Venkatraman VK, Akshoomoff N, Amaral DG, Bloss CS, Casey BJ, Chang L, Ernst TM, Frazier JA, Gruen JR, Kaufmann WE, Kenet T, Kennedy DN, Murray SS, Sowell ER, Jernigan TL, Dale AM (2012) Neuroanatomical assessment of biological maturity. Curr Biol 22:1693–1698PubMedPubMedCentral Brown TT, Kuperman JM, Chung Y, Erhart M, McCabe C, Hagler DJ Jr, Venkatraman VK, Akshoomoff N, Amaral DG, Bloss CS, Casey BJ, Chang L, Ernst TM, Frazier JA, Gruen JR, Kaufmann WE, Kenet T, Kennedy DN, Murray SS, Sowell ER, Jernigan TL, Dale AM (2012) Neuroanatomical assessment of biological maturity. Curr Biol 22:1693–1698PubMedPubMedCentral

go back to reference Chang L, Cloak C, Jiang CS, Farnham S, Tokeshi B, Buchthal S, Hedemark B, Smith LM, Ernst T (2009) Altered neurometabolites and motor integration in children exposed to methamphetamine in utero. Neuroimage 48:391–397PubMed Chang L, Cloak C, Jiang CS, Farnham S, Tokeshi B, Buchthal S, Hedemark B, Smith LM, Ernst T (2009) Altered neurometabolites and motor integration in children exposed to methamphetamine in utero. Neuroimage 48:391–397PubMed

go back to reference Chang L, Akazawa K, Yamakawa R, Hayama S, Buchthal S, Alicata D, Andres T, Castillo D, Oishi K, Skranes J, Ernst T, Oishi K (2016a) Delayed early developmental trajectories of white matter tracts of functional pathways in preterm-born infants: longitudinal diffusion tensor imaging data. Data Brief 6:1007–1015PubMedPubMedCentral Chang L, Akazawa K, Yamakawa R, Hayama S, Buchthal S, Alicata D, Andres T, Castillo D, Oishi K, Skranes J, Ernst T, Oishi K (2016a) Delayed early developmental trajectories of white matter tracts of functional pathways in preterm-born infants: longitudinal diffusion tensor imaging data. Data Brief 6:1007–1015PubMedPubMedCentral

go back to reference Chang L, Oishi K, Skranes J, Buchthal S, Cunningham E, Yamakawa R, Hayama S, Jiang CS, Alicata D, Hernandez A, Cloak C, Wright T, Ernst T (2016b) Sex-specific alterations of white matter developmental trajectories in infants with prenatal exposure to methamphetamine and tobacco. JAMA Psychiatry 73:1217–1227PubMedPubMedCentral Chang L, Oishi K, Skranes J, Buchthal S, Cunningham E, Yamakawa R, Hayama S, Jiang CS, Alicata D, Hernandez A, Cloak C, Wright T, Ernst T (2016b) Sex-specific alterations of white matter developmental trajectories in infants with prenatal exposure to methamphetamine and tobacco. JAMA Psychiatry 73:1217–1227PubMedPubMedCentral

go back to reference Christensen GE, Rabbitt RD, Miller MI (1996) Deformable templates using large deformation kinematics. IEEE Trans Image Process 5:1435–1447PubMed Christensen GE, Rabbitt RD, Miller MI (1996) Deformable templates using large deformation kinematics. IEEE Trans Image Process 5:1435–1447PubMed

go back to reference Counsell SJ, Boardman JP (2005) Differential brain growth in the infant born preterm: current knowledge and future developments from brain imaging. Semin Fetal Neonatal Med 10:403–410PubMed Counsell SJ, Boardman JP (2005) Differential brain growth in the infant born preterm: current knowledge and future developments from brain imaging. Semin Fetal Neonatal Med 10:403–410PubMed

go back to reference Counsell SJ, Shen YJ, Boardman JP, Larkman DJ, Kapellou O, Ward P, Allsop JM, Cowan FM, Hajnal JV, Edwards AD, Rutherford MA (2006) Axial and radial diffusivity in preterm infants who have diffuse white matter changes on magnetic resonance imaging at term-equivalent age. Pediatrics 117:376–386PubMed Counsell SJ, Shen YJ, Boardman JP, Larkman DJ, Kapellou O, Ward P, Allsop JM, Cowan FM, Hajnal JV, Edwards AD, Rutherford MA (2006) Axial and radial diffusivity in preterm infants who have diffuse white matter changes on magnetic resonance imaging at term-equivalent age. Pediatrics 117:376–386PubMed

go back to reference Dean DC 3rd, O'Muircheartaigh J, Dirks H, Waskiewicz N, Walker L, Doernberg E, Piryatinsky I, Deoni SC (2015) Characterizing longitudinal white matter development during early childhood. Brain Struct Funct 220:1921–1933PubMed Dean DC 3rd, O'Muircheartaigh J, Dirks H, Waskiewicz N, Walker L, Doernberg E, Piryatinsky I, Deoni SC (2015) Characterizing longitudinal white matter development during early childhood. Brain Struct Funct 220:1921–1933PubMed

go back to reference Dempster AP, Laird NM, Rubin DB (1976) Maximum likelihood from incomplete data via the EM algorithm. Int Conf R Stat Soc. https://doi.org/10.1111/j.2517-6161.1977.tb01600.xCrossRef Dempster AP, Laird NM, Rubin DB (1976) Maximum likelihood from incomplete data via the EM algorithm. Int Conf R Stat Soc. https://​doi.​org/​10.​1111/​j.​2517-6161.​1977.​tb01600.​xCrossRef

go back to reference Di Martino A, O’Connor D, Chen B, Alaerts K, Anderson JS, Assaf M, Balsters JH, Baxter L, Beggiato A, Bernaerts S, Blanken LME, Bookheimer SY, Braden BB, Byrge L, Castellanos FX, Dapretto M, Delorme R, Fair DA, Fishman I, Fitzgerald J, Gallagher L, Keehn RJJ, Kennedy DP, Lainhart JE, Luna B, Mostofsky SH, Müller R-A, Nebel MB, Nigg JT, O’Hearn K, Solomon M, Toro R, Vaidya CJ, Wenderoth N, White T, Craddock RC, Lord C, Leventhal B, Milham MP (2017) Enhancing studies of the connectome in autism using the autism brain imaging data exchange II. Sci Data 4:170010PubMedPubMedCentral Di Martino A, O’Connor D, Chen B, Alaerts K, Anderson JS, Assaf M, Balsters JH, Baxter L, Beggiato A, Bernaerts S, Blanken LME, Bookheimer SY, Braden BB, Byrge L, Castellanos FX, Dapretto M, Delorme R, Fair DA, Fishman I, Fitzgerald J, Gallagher L, Keehn RJJ, Kennedy DP, Lainhart JE, Luna B, Mostofsky SH, Müller R-A, Nebel MB, Nigg JT, O’Hearn K, Solomon M, Toro R, Vaidya CJ, Wenderoth N, White T, Craddock RC, Lord C, Leventhal B, Milham MP (2017) Enhancing studies of the connectome in autism using the autism brain imaging data exchange II. Sci Data 4:170010PubMedPubMedCentral

go back to reference Dosenbach NU, Nardos B, Cohen AL, Fair DA, Power JD, Church JA, Nelson SM, Wig GS, Vogel AC, Lessov-Schlaggar CN, Barnes KA, Dubis JW, Feczko E, Coalson RS, Pruett JR Jr, Barch DM, Petersen SE, Schlaggar BL (2010) Prediction of individual brain maturity using fMRI. Science 329:1358–1361PubMedPubMedCentral Dosenbach NU, Nardos B, Cohen AL, Fair DA, Power JD, Church JA, Nelson SM, Wig GS, Vogel AC, Lessov-Schlaggar CN, Barnes KA, Dubis JW, Feczko E, Coalson RS, Pruett JR Jr, Barch DM, Petersen SE, Schlaggar BL (2010) Prediction of individual brain maturity using fMRI. Science 329:1358–1361PubMedPubMedCentral

go back to reference Duffy FH, Als H, McAnulty GB (1990) Behavioral and electrophysiological evidence for gestational age effects in healthy preterm and fullterm infants studied two weeks after expected due date. Child Dev 61:271–286PubMed Duffy FH, Als H, McAnulty GB (1990) Behavioral and electrophysiological evidence for gestational age effects in healthy preterm and fullterm infants studied two weeks after expected due date. Child Dev 61:271–286PubMed

go back to reference Franke K, Luders E, May A, Wilke M, Gaser C (2012) Brain maturation: predicting individual BrainAGE in children and adolescents using structural MRI. Neuroimage 63:1305–1312PubMed Franke K, Luders E, May A, Wilke M, Gaser C (2012) Brain maturation: predicting individual BrainAGE in children and adolescents using structural MRI. Neuroimage 63:1305–1312PubMed

go back to reference Fryer SL, Frank LR, Spadoni AD, Theilmann RJ, Nagel BJ, Schweinsburg AD, Tapert SF (2008) Microstructural integrity of the corpus callosum linked with neuropsychological performance in adolescents. Brain Cogn 67:225–233PubMedPubMedCentral Fryer SL, Frank LR, Spadoni AD, Theilmann RJ, Nagel BJ, Schweinsburg AD, Tapert SF (2008) Microstructural integrity of the corpus callosum linked with neuropsychological performance in adolescents. Brain Cogn 67:225–233PubMedPubMedCentral

go back to reference Giedd JN, Blumenthal J, Jeffries NO, Castellanos FX, Liu H, Zijdenbos A, Paus T, Evans AC, Rapoport JL (1999a) Brain development during childhood and adolescence: a longitudinal MRI study. Nat Neurosci 2:861–863PubMed Giedd JN, Blumenthal J, Jeffries NO, Castellanos FX, Liu H, Zijdenbos A, Paus T, Evans AC, Rapoport JL (1999a) Brain development during childhood and adolescence: a longitudinal MRI study. Nat Neurosci 2:861–863PubMed

go back to reference Giedd JN, Blumenthal J, Jeffries NO, Rajapakse JC, Vaituzis AC, Liu H, Berry YC, Tobin M, Nelson J, Castellanos FX (1999b) Development of the human corpus callosum during childhood and adolescence: a longitudinal MRI study. Prog Neuropsychopharmacol Biol Psychiatry 23:571–588PubMed Giedd JN, Blumenthal J, Jeffries NO, Rajapakse JC, Vaituzis AC, Liu H, Berry YC, Tobin M, Nelson J, Castellanos FX (1999b) Development of the human corpus callosum during childhood and adolescence: a longitudinal MRI study. Prog Neuropsychopharmacol Biol Psychiatry 23:571–588PubMed

go back to reference Gimenez M, Miranda MJ, Born AP, Nagy Z, Rostrup E, Jernigan TL (2008) Accelerated cerebral white matter development in preterm infants: a voxel-based morphometry study with diffusion tensor MR imaging. Neuroimage 41:728–734PubMed Gimenez M, Miranda MJ, Born AP, Nagy Z, Rostrup E, Jernigan TL (2008) Accelerated cerebral white matter development in preterm infants: a voxel-based morphometry study with diffusion tensor MR imaging. Neuroimage 41:728–734PubMed

go back to reference Hagler DJ Jr, Hatton S, Cornejo MD, Makowski C, Fair DA, Dick AS, Sutherland MT, Casey BJ, Barch DM, Harms MP, Watts R, Bjork JM, Garavan HP, Hilmer L, Pung CJ, Sicat CS, Kuperman J, Bartsch H, Xue F, Heitzeg MM, Laird AR, Trinh TT, Gonzalez R, Tapert SF, Riedel MC, Squeglia LM, Hyde LW, Rosenberg MD, Earl EA, Howlett KD, Baker FC, Soules M, Diaz J, de Leon OR, Thompson WK, Neale MC, Herting M, Sowell ER, Alvarez RP, Hawes SW, Sanchez M, Bodurka J, Breslin FJ, Morris AS, Paulus MP, Simmons WK, Polimeni JR, van der Kouwe A, Nencka AS, Gray KM, Pierpaoli C, Matochik JA, Noronha A, Aklin WM, Conway K, Glantz M, Hoffman E, Little R, Lopez M, Pariyadath V, Weiss SR, Wolff-Hughes DL, DelCarmen-Wiggins R, Feldstein Ewing SW, Miranda-Dominguez O, Nagel BJ, Perrone AJ, Sturgeon DT, Goldstone A, Pfefferbaum A, Pohl KM, Prouty D, Uban K, Bookheimer SY, Dapretto M, Galvan A, Bagot K, Giedd J, Infante MA, Jacobus J, Patrick K, Shilling PD, Desikan R, Li Y, Sugrue L, Banich MT, Friedman N, Hewitt JK, Hopfer C, Sakai J, Tanabe J, Cottler LB, Nixon SJ, Chang L, Cloak C, Ernst T, Reeves G, Kennedy DN, Heeringa S, Peltier S, Schulenberg J, Sripada C, Zucker RA, Iacono WG, Luciana M, Calabro FJ, Clark DB, Lewis DA, Luna B, Schirda C, Brima T, Foxe JJ, Freedman EG, Mruzek DW, Mason MJ, Huber R, McGlade E, Prescot A, Renshaw PF, Yurgelun-Todd DA, Allgaier NA, Dumas JA, Ivanova M, Potter A, Florsheim P, Larson C, Lisdahl K, Charness ME, Fuemmeler B, Hettema JM, Maes HH, Steinberg J, Anokhin AP, Glaser P, Heath AC, Madden PA, Baskin-Sommers A, Constable RT, Grant SJ, Dowling GJ, Brown SA, Jernigan TL, Dale AM (2019) Image processing and analysis methods for the Adolescent Brain Cognitive Development Study. Neuroimage 202:116091PubMed Hagler DJ Jr, Hatton S, Cornejo MD, Makowski C, Fair DA, Dick AS, Sutherland MT, Casey BJ, Barch DM, Harms MP, Watts R, Bjork JM, Garavan HP, Hilmer L, Pung CJ, Sicat CS, Kuperman J, Bartsch H, Xue F, Heitzeg MM, Laird AR, Trinh TT, Gonzalez R, Tapert SF, Riedel MC, Squeglia LM, Hyde LW, Rosenberg MD, Earl EA, Howlett KD, Baker FC, Soules M, Diaz J, de Leon OR, Thompson WK, Neale MC, Herting M, Sowell ER, Alvarez RP, Hawes SW, Sanchez M, Bodurka J, Breslin FJ, Morris AS, Paulus MP, Simmons WK, Polimeni JR, van der Kouwe A, Nencka AS, Gray KM, Pierpaoli C, Matochik JA, Noronha A, Aklin WM, Conway K, Glantz M, Hoffman E, Little R, Lopez M, Pariyadath V, Weiss SR, Wolff-Hughes DL, DelCarmen-Wiggins R, Feldstein Ewing SW, Miranda-Dominguez O, Nagel BJ, Perrone AJ, Sturgeon DT, Goldstone A, Pfefferbaum A, Pohl KM, Prouty D, Uban K, Bookheimer SY, Dapretto M, Galvan A, Bagot K, Giedd J, Infante MA, Jacobus J, Patrick K, Shilling PD, Desikan R, Li Y, Sugrue L, Banich MT, Friedman N, Hewitt JK, Hopfer C, Sakai J, Tanabe J, Cottler LB, Nixon SJ, Chang L, Cloak C, Ernst T, Reeves G, Kennedy DN, Heeringa S, Peltier S, Schulenberg J, Sripada C, Zucker RA, Iacono WG, Luciana M, Calabro FJ, Clark DB, Lewis DA, Luna B, Schirda C, Brima T, Foxe JJ, Freedman EG, Mruzek DW, Mason MJ, Huber R, McGlade E, Prescot A, Renshaw PF, Yurgelun-Todd DA, Allgaier NA, Dumas JA, Ivanova M, Potter A, Florsheim P, Larson C, Lisdahl K, Charness ME, Fuemmeler B, Hettema JM, Maes HH, Steinberg J, Anokhin AP, Glaser P, Heath AC, Madden PA, Baskin-Sommers A, Constable RT, Grant SJ, Dowling GJ, Brown SA, Jernigan TL, Dale AM (2019) Image processing and analysis methods for the Adolescent Brain Cognitive Development Study. Neuroimage 202:116091PubMed

go back to reference Hasegawa T, Yamada K, Morimoto M, Morioka S, Tozawa T, Isoda K, Murakami A, Chiyonobu T, Tokuda S, Nishimura A, Nishimura T, Hosoi H (2011) Development of corpus callosum in preterm infants is affected by the prematurity. In vivo assessment of diffusion tensor imaging at term-equivalent age. Pediatr Res 69:249–254PubMed Hasegawa T, Yamada K, Morimoto M, Morioka S, Tozawa T, Isoda K, Murakami A, Chiyonobu T, Tokuda S, Nishimura A, Nishimura T, Hosoi H (2011) Development of corpus callosum in preterm infants is affected by the prematurity. In vivo assessment of diffusion tensor imaging at term-equivalent age. Pediatr Res 69:249–254PubMed

go back to reference Howell BR, Styner MA, Gao W, Yap PT, Wang L, Baluyot K, Yacoub E, Chen G, Potts T, Salzwedel A, Li G, Gilmore JH, Piven J, Smith JK, Shen D, Ugurbil K, Zhu H, Lin W, Elison JT (2019) The UNC/UMN Baby Connectome Project (BCP): an overview of the study design and protocol development. Neuroimage 185:891–905PubMed Howell BR, Styner MA, Gao W, Yap PT, Wang L, Baluyot K, Yacoub E, Chen G, Potts T, Salzwedel A, Li G, Gilmore JH, Piven J, Smith JK, Shen D, Ugurbil K, Zhu H, Lin W, Elison JT (2019) The UNC/UMN Baby Connectome Project (BCP): an overview of the study design and protocol development. Neuroimage 185:891–905PubMed

go back to reference Huppi PS, Maier SE, Peled S, Zientara GP, Barnes PD, Jolesz FA, Volpe JJ (1998) Microstructural development of human newborn cerebral white matter assessed in vivo by diffusion tensor magnetic resonance imaging. Pediatr Res 44:584–590PubMed Huppi PS, Maier SE, Peled S, Zientara GP, Barnes PD, Jolesz FA, Volpe JJ (1998) Microstructural development of human newborn cerebral white matter assessed in vivo by diffusion tensor magnetic resonance imaging. Pediatr Res 44:584–590PubMed

go back to reference Jedynak BM, Lang A, Liu B, Katz E, Zhang Y, Wyman BT, Raunig D, Jedynak CP, Caffo B, Prince JL, Alzheimer's Disease Neuroimaging I (2012) A computational neurodegenerative disease progression score: method and results with the Alzheimer's disease Neuroimaging Initiative cohort. Neuroimage 63:1478–1486PubMed Jedynak BM, Lang A, Liu B, Katz E, Zhang Y, Wyman BT, Raunig D, Jedynak CP, Caffo B, Prince JL, Alzheimer's Disease Neuroimaging I (2012) A computational neurodegenerative disease progression score: method and results with the Alzheimer's disease Neuroimaging Initiative cohort. Neuroimage 63:1478–1486PubMed

go back to reference Jernigan TL, Brown TT, Hagler DJ Jr, Akshoomoff N, Bartsch H, Newman E, Thompson WK, Bloss CS, Murray SS, Schork N, Kennedy DN, Kuperman JM, McCabe C, Chung Y, Libiger O, Maddox M, Casey BJ, Chang L, Ernst TM, Frazier JA, Gruen JR, Sowell ER, Kenet T, Kaufmann WE, Mostofsky S, Amaral DG, Dale AM, Pediatric Imaging N, Genetics S (2016) The pediatric imaging, neurocognition, and genetics (PING) data repository. Neuroimage 124:1149–1154PubMed Jernigan TL, Brown TT, Hagler DJ Jr, Akshoomoff N, Bartsch H, Newman E, Thompson WK, Bloss CS, Murray SS, Schork N, Kennedy DN, Kuperman JM, McCabe C, Chung Y, Libiger O, Maddox M, Casey BJ, Chang L, Ernst TM, Frazier JA, Gruen JR, Sowell ER, Kenet T, Kaufmann WE, Mostofsky S, Amaral DG, Dale AM, Pediatric Imaging N, Genetics S (2016) The pediatric imaging, neurocognition, and genetics (PING) data repository. Neuroimage 124:1149–1154PubMed

go back to reference Jiang H, van Zijl PC, Kim J, Pearlson GD, Mori S (2006) DtiStudio: resource program for diffusion tensor computation and fiber bundle tracking. Comput Methods Programs Biomed 81:106–116PubMed Jiang H, van Zijl PC, Kim J, Pearlson GD, Mori S (2006) DtiStudio: resource program for diffusion tensor computation and fiber bundle tracking. Comput Methods Programs Biomed 81:106–116PubMed

go back to reference Knickmeyer RC, Gouttard S, Kang C, Evans D, Wilber K, Smith JK, Hamer RM, Lin W, Gerig G, Gilmore JH (2008) A structural MRI study of human brain development from birth to 2 years. J Neurosci 28:12176–12182PubMedPubMedCentral Knickmeyer RC, Gouttard S, Kang C, Evans D, Wilber K, Smith JK, Hamer RM, Lin W, Gerig G, Gilmore JH (2008) A structural MRI study of human brain development from birth to 2 years. J Neurosci 28:12176–12182PubMedPubMedCentral

go back to reference Laird NM, Ware JH (1982) Random-effects models for longitudinal data. Biometrics 38:963–974PubMed Laird NM, Ware JH (1982) Random-effects models for longitudinal data. Biometrics 38:963–974PubMed

go back to reference Li Y, Shea SM, Lorenz CH, Jiang H, Chou MC, Mori S (2013) Image corruption detection in diffusion tensor imaging for post-processing and real-time monitoring. PLoS ONE 8:e49764PubMedPubMedCentral Li Y, Shea SM, Lorenz CH, Jiang H, Chou MC, Mori S (2013) Image corruption detection in diffusion tensor imaging for post-processing and real-time monitoring. PLoS ONE 8:e49764PubMedPubMedCentral

go back to reference Makropoulos A, Robinson EC, Schuh A, Wright R, Fitzgibbon S, Bozek J, Counsell SJ, Steinweg J, Vecchiato K, Passerat-Palmbach J, Lenz G, Mortari F, Tenev T, Duff EP, Bastiani M, Cordero-Grande L, Hughes E, Tusor N, Tournier JD, Hutter J, Price AN, Teixeira R, Murgasova M, Victor S, Kelly C, Rutherford MA, Smith SM, Edwards AD, Hajnal JV, Jenkinson M, Rueckert D (2018) The developing human connectome project: a minimal processing pipeline for neonatal cortical surface reconstruction. Neuroimage 173:88–112PubMed Makropoulos A, Robinson EC, Schuh A, Wright R, Fitzgibbon S, Bozek J, Counsell SJ, Steinweg J, Vecchiato K, Passerat-Palmbach J, Lenz G, Mortari F, Tenev T, Duff EP, Bastiani M, Cordero-Grande L, Hughes E, Tusor N, Tournier JD, Hutter J, Price AN, Teixeira R, Murgasova M, Victor S, Kelly C, Rutherford MA, Smith SM, Edwards AD, Hajnal JV, Jenkinson M, Rueckert D (2018) The developing human connectome project: a minimal processing pipeline for neonatal cortical surface reconstruction. Neuroimage 173:88–112PubMed

go back to reference Miller MI, Christensen GE, Amit Y, Grenander U (1993) Mathematical textbook of deformable neuroanatomies. Proc Natl Acad Sci USA 90:11944–11948PubMedPubMedCentral Miller MI, Christensen GE, Amit Y, Grenander U (1993) Mathematical textbook of deformable neuroanatomies. Proc Natl Acad Sci USA 90:11944–11948PubMedPubMedCentral

go back to reference Mukherjee P, Miller JH, Shimony JS, Conturo TE, Lee BC, Almli CR, McKinstry RC (2001) Normal brain maturation during childhood: developmental trends characterized with diffusion-tensor MR imaging. Radiology 221:349–358PubMed Mukherjee P, Miller JH, Shimony JS, Conturo TE, Lee BC, Almli CR, McKinstry RC (2001) Normal brain maturation during childhood: developmental trends characterized with diffusion-tensor MR imaging. Radiology 221:349–358PubMed

go back to reference Mukherjee P, Miller JH, Shimony JS, Philip JV, Nehra D, Snyder AZ, Conturo TE, Neil JJ, McKinstry RC (2002) Diffusion-tensor MR imaging of gray and white matter development during normal human brain maturation. AJNR Am J Neuroradiol 23:1445–1456PubMedPubMedCentral Mukherjee P, Miller JH, Shimony JS, Philip JV, Nehra D, Snyder AZ, Conturo TE, Neil JJ, McKinstry RC (2002) Diffusion-tensor MR imaging of gray and white matter development during normal human brain maturation. AJNR Am J Neuroradiol 23:1445–1456PubMedPubMedCentral

go back to reference Oishi K, Mori S, Donohue PK, Ernst T, Anderson L, Buchthal S, Faria A, Jiang H, Li X, Miller MI, van Zijl PC, Chang L (2011) Multi-contrast human neonatal brain atlas: application to normal neonate development analysis. Neuroimage 56:8–20PubMed Oishi K, Mori S, Donohue PK, Ernst T, Anderson L, Buchthal S, Faria A, Jiang H, Li X, Miller MI, van Zijl PC, Chang L (2011) Multi-contrast human neonatal brain atlas: application to normal neonate development analysis. Neuroimage 56:8–20PubMed

go back to reference Ortibus E, Verhoeven J, Sunaert S, Casteels I, de Cock P, Lagae L (2012) Integrity of the inferior longitudinal fasciculus and impaired object recognition in children: a diffusion tensor imaging study. Dev Med Child Neurol 54:38–43PubMed Ortibus E, Verhoeven J, Sunaert S, Casteels I, de Cock P, Lagae L (2012) Integrity of the inferior longitudinal fasciculus and impaired object recognition in children: a diffusion tensor imaging study. Dev Med Child Neurol 54:38–43PubMed

go back to reference Ostby Y, Tamnes CK, Fjell AM, Westlye LT, Due-Tonnessen P, Walhovd KB (2009) Heterogeneity in subcortical brain development: a structural magnetic resonance imaging study of brain maturation from 8 to 30 years. J Neurosci 29:11772–11782PubMedPubMedCentral Ostby Y, Tamnes CK, Fjell AM, Westlye LT, Due-Tonnessen P, Walhovd KB (2009) Heterogeneity in subcortical brain development: a structural magnetic resonance imaging study of brain maturation from 8 to 30 years. J Neurosci 29:11772–11782PubMedPubMedCentral

go back to reference Partridge SC, Mukherjee P, Henry RG, Miller SP, Berman JI, Jin H, Lu Y, Glenn OA, Ferriero DM, Barkovich AJ, Vigneron DB (2004) Diffusion tensor imaging: serial quantitation of white matter tract maturity in premature newborns. Neuroimage 22:1302–1314PubMed Partridge SC, Mukherjee P, Henry RG, Miller SP, Berman JI, Jin H, Lu Y, Glenn OA, Ferriero DM, Barkovich AJ, Vigneron DB (2004) Diffusion tensor imaging: serial quantitation of white matter tract maturity in premature newborns. Neuroimage 22:1302–1314PubMed

go back to reference Roos A, Kwiatkowski MA, Fouche JP, Narr KL, Thomas KG, Stein DJ, Donald KA (2015) White matter integrity and cognitive performance in children with prenatal methamphetamine exposure. Behav Brain Res 279:62–67PubMed Roos A, Kwiatkowski MA, Fouche JP, Narr KL, Thomas KG, Stein DJ, Donald KA (2015) White matter integrity and cognitive performance in children with prenatal methamphetamine exposure. Behav Brain Res 279:62–67PubMed

go back to reference Rose SE, Hatzigeorgiou X, Strudwick MW, Durbridge G, Davies PS, Colditz PB (2008) Altered white matter diffusion anisotropy in normal and preterm infants at term-equivalent age. Magn Reson Med 60:761–767PubMed Rose SE, Hatzigeorgiou X, Strudwick MW, Durbridge G, Davies PS, Colditz PB (2008) Altered white matter diffusion anisotropy in normal and preterm infants at term-equivalent age. Magn Reson Med 60:761–767PubMed

go back to reference Roussotte FF, Bramen JE, Nunez SC, Quandt LC, Smith L, O'Connor MJ, Bookheimer SY, Sowell ER (2011) Abnormal brain activation during working memory in children with prenatal exposure to drugs of abuse: the effects of methamphetamine, alcohol, and polydrug exposure. Neuroimage 54:3067–3075PubMed Roussotte FF, Bramen JE, Nunez SC, Quandt LC, Smith L, O'Connor MJ, Bookheimer SY, Sowell ER (2011) Abnormal brain activation during working memory in children with prenatal exposure to drugs of abuse: the effects of methamphetamine, alcohol, and polydrug exposure. Neuroimage 54:3067–3075PubMed

go back to reference Sadeghi N, Prastawa M, Fletcher PT, Wolff J, Gilmore JH, Gerig G (2013) Regional characterization of longitudinal DT-MRI to study white matter maturation of the early developing brain. Neuroimage 68:236–247PubMed Sadeghi N, Prastawa M, Fletcher PT, Wolff J, Gilmore JH, Gerig G (2013) Regional characterization of longitudinal DT-MRI to study white matter maturation of the early developing brain. Neuroimage 68:236–247PubMed

go back to reference Saksena S, Husain N, Malik GK, Trivedi R, Sarma M, Rathore RS, Pandey CM, Gupta RK (2008) Comparative evaluation of the cerebral and cerebellar white matter development in pediatric age group using quantitative diffusion tensor imaging. Cerebellum 7:392–400PubMed Saksena S, Husain N, Malik GK, Trivedi R, Sarma M, Rathore RS, Pandey CM, Gupta RK (2008) Comparative evaluation of the cerebral and cerebellar white matter development in pediatric age group using quantitative diffusion tensor imaging. Cerebellum 7:392–400PubMed

go back to reference Shi F, Yap PT, Wu GR, Jia HJ, Gilmore JH, Lin WL, Shen DG (2011) Infant brain atlases from neonates to 1-and 2-year-olds. PLoS ONE 6:e18746PubMedPubMedCentral Shi F, Yap PT, Wu GR, Jia HJ, Gilmore JH, Lin WL, Shen DG (2011) Infant brain atlases from neonates to 1-and 2-year-olds. PLoS ONE 6:e18746PubMedPubMedCentral

go back to reference Sowell ER, Leow AD, Bookheimer SY, Smith LM, O'Connor MJ, Kan E, Rosso C, Houston S, Dinov ID, Thompson PM (2010) Differentiating prenatal exposure to methamphetamine and alcohol versus alcohol and not methamphetamine using tensor-based brain morphometry and discriminant analysis. J Neurosci 30:3876–3885PubMedPubMedCentral Sowell ER, Leow AD, Bookheimer SY, Smith LM, O'Connor MJ, Kan E, Rosso C, Houston S, Dinov ID, Thompson PM (2010) Differentiating prenatal exposure to methamphetamine and alcohol versus alcohol and not methamphetamine using tensor-based brain morphometry and discriminant analysis. J Neurosci 30:3876–3885PubMedPubMedCentral

go back to reference Thompson DK, Inder TE, Faggian N, Johnston L, Warfield SK, Anderson PJ, Doyle LW, Egan GF (2011) Characterization of the corpus callosum in very preterm and full-term infants utilizing MRI. Neuroimage 55:479–490PubMed Thompson DK, Inder TE, Faggian N, Johnston L, Warfield SK, Anderson PJ, Doyle LW, Egan GF (2011) Characterization of the corpus callosum in very preterm and full-term infants utilizing MRI. Neuroimage 55:479–490PubMed

go back to reference Van Braeckel K, Butcher PR, Geuze RH, van Duijn MA, Bos AF, Bouma A (2008) Less efficient elementary visuomotor processes in 7- to 10-year-old preterm-born children without cerebral palsy: an indication of impaired dorsal stream processes. Neuropsychology 22:755–764PubMed Van Braeckel K, Butcher PR, Geuze RH, van Duijn MA, Bos AF, Bouma A (2008) Less efficient elementary visuomotor processes in 7- to 10-year-old preterm-born children without cerebral palsy: an indication of impaired dorsal stream processes. Neuropsychology 22:755–764PubMed

go back to reference van Kooij BJ, de Vries LS, Ball G, van Haastert IC, Benders MJ, Groenendaal F, Counsell SJ (2012) Neonatal tract-based spatial statistics findings and outcome in preterm infants. AJNR Am J Neuroradiol 33:188–194PubMedPubMedCentral van Kooij BJ, de Vries LS, Ball G, van Haastert IC, Benders MJ, Groenendaal F, Counsell SJ (2012) Neonatal tract-based spatial statistics findings and outcome in preterm infants. AJNR Am J Neuroradiol 33:188–194PubMedPubMedCentral

go back to reference Volpe JJ (2009) Brain injury in premature infants: a complex amalgam of destructive and developmental disturbances. Lancet Neurol 8:110–124PubMedPubMedCentral Volpe JJ (2009) Brain injury in premature infants: a complex amalgam of destructive and developmental disturbances. Lancet Neurol 8:110–124PubMedPubMedCentral

go back to reference Weisenfeld NI, Warfield SK (2009) Automatic segmentation of newborn brain MRI. Neuroimage 47:564–572PubMed Weisenfeld NI, Warfield SK (2009) Automatic segmentation of newborn brain MRI. Neuroimage 47:564–572PubMed

go back to reference Wu D, Chang LD, Akazawa K, Oishi K, Skranes J, Ernst T, Oishi K (2017) Mapping the critical gestational age at birth that alters brain development in preterm-born infants using multi-modal MRI. Neuroimage 149:33–43PubMed Wu D, Chang LD, Akazawa K, Oishi K, Skranes J, Ernst T, Oishi K (2017) Mapping the critical gestational age at birth that alters brain development in preterm-born infants using multi-modal MRI. Neuroimage 149:33–43PubMed

go back to reference Yap QJ, Teh I, Fusar-Poli P, Sum MY, Kuswanto C, Sim K (2013) Tracking cerebral white matter changes across the lifespan: insights from diffusion tensor imaging studies. J Neural Transm (Vienna) 120:1369–1395 Yap QJ, Teh I, Fusar-Poli P, Sum MY, Kuswanto C, Sim K (2013) Tracking cerebral white matter changes across the lifespan: insights from diffusion tensor imaging studies. J Neural Transm (Vienna) 120:1369–1395

go back to reference Yoo SS, Park HJ, Soul JS, Mamata H, Park H, Westin CF, Bassan H, Du Plessis AJ, Robertson RL Jr, Maier SE, Ringer SA, Volpe JJ, Zientara GP (2005) In vivo visualization of white matter fiber tracts of preterm- and term-infant brains with diffusion tensor magnetic resonance imaging. Invest Radiol 40:110–115PubMed Yoo SS, Park HJ, Soul JS, Mamata H, Park H, Westin CF, Bassan H, Du Plessis AJ, Robertson RL Jr, Maier SE, Ringer SA, Volpe JJ, Zientara GP (2005) In vivo visualization of white matter fiber tracts of preterm- and term-infant brains with diffusion tensor magnetic resonance imaging. Invest Radiol 40:110–115PubMed

go back to reference Zhang L, Thomas KM, Davidson MC, Casey BJ, Heier LA, Ulug AM (2005) MR quantitation of volume and diffusion changes in the developing brain. AJNR Am J Neuroradiol 26:45–49PubMedPubMedCentral Zhang L, Thomas KM, Davidson MC, Casey BJ, Heier LA, Ulug AM (2005) MR quantitation of volume and diffusion changes in the developing brain. AJNR Am J Neuroradiol 26:45–49PubMedPubMedCentral

go back to reference Zuo X-N, He Y, Betzel RF, Colcombe S, Sporns O, Milham MP (2017) Human connectomics across the life span. Trends Cogn Sci 21:32–45PubMed Zuo X-N, He Y, Betzel RF, Colcombe S, Sporns O, Milham MP (2017) Human connectomics across the life span. Trends Cogn Sci 21:32–45PubMed