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Published in: Drug Safety 8/2007

01-08-2007 | Original Research Article

Criteria Revision and Performance Comparison of Three Methods of Signal Detection Applied to the Spontaneous Reporting Database of a Pharmaceutical Manufacturer

Authors: Yasuyuki Matsushita, Mr Yasufumi Kuroda, Shinpei Niwa, Satoshi Sonehara, Chikuma Hamada, Isao Yoshimura

Published in: Drug Safety | Issue 8/2007

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Abstract

Background and objective: Several statistical methods exist for detecting signals of potential adverse drug reactions in spontaneous reporting databases. However, these signal-detection methods were developed using regulatory databases, which contain a far larger number of adverse event reports than the databases maintained by individual pharmaceutical manufacturers. Furthermore, the composition and quality of the spontaneous reporting databases differ between regulatory agencies and pharmaceutical companies. Thus, the signal-detection criteria proposed for regulatory use are considered to be inappropriate for pharmaceutical industry use without modification. The objective of this study was to revise the criteria for signal detection to make them suitable for use by pharmaceutical manufacturers.
Methods: A model comprising 40 drugs and 1000 adverse events was constructed based on a spontaneous reporting database provided by a pharmaceutical company and used in a simulation to investigate appropriate criteria for signal detection. In total, 1000 pseudo datasets were generated with this model, and three statistical methods (proportional reporting ratio [PRR], Bayesian Confidence Propagation Neural Network [BCPNN] and multi-item gamma Poisson shrinker [MGPS]) for signal detection were applied to each dataset. The sensitivity and specificity of each method were evaluated using these pseudo datasets. The optimum critical value for signal detection (i.e. the value that achieved the highest sensitivity with 95% specificity) was identified for each method. The optimum values were also examined with the adverse events classified into two categories according to frequency. The three original detection methods and their revised versions were applied to a real pharmaceutical company database to detect 173 known adverse reactions of four drugs.
Results:The 1000 pseudo datasets consisted of an average of 81 862 reports and 11 407 drug-event pairs, including 1192 adverse drug reactions. The sensitivities of PRR, BCPNN and MGPS methods were 49%, 45% and 26%, respectively, whereas their specificities were 95%, 99.6% and 99.99%, respectively; these sensitivities were unacceptably low for pharmaceutical manufacturers, whereas the specificities were acceptable. The highest sensitivity for each method, obtained by changing critical values and maintaining specificity at 95%, was 44%, 62% and 62%, respectively. When adverse events were classified into two categories, sensitivities as high as 75% for regular events and 39% for rare events were achieved with the revised BCPNN method. The critical values of the information component minus two standard deviations (IC —2SD) index of the revised BCPNN method were greater than −0.7 for regular events and greater than −0.6 for rare events. The revised BCPNN method yielded 51% sensitivity and 89% specificity for the real dataset.
Conclusion:A lower critical value may be needed when signal-detection methodology is applied to the spontaneous reporting databases of pharmaceutical manufacturers. For example, it is recommended that pharmaceutical manufacturers use the BCPNN method with IC —2SD criteria of greater than −0.7 for regular events and greater than −0.6 for rare events.
Literature
3.
go back to reference Lindquist M, Edwards IR, Bate A, et al. From association to alert: a revised approach to international signal analysis. Pharmacoepidemiol Drug Saf 1999; 8: S15–25PubMedCrossRef Lindquist M, Edwards IR, Bate A, et al. From association to alert: a revised approach to international signal analysis. Pharmacoepidemiol Drug Saf 1999; 8: S15–25PubMedCrossRef
4.
go back to reference Evans SJW, Waller P, Davis S. Proportional reporting ratios: the uses of epidemiological methods of signal generation. Pharmacoepidemiol Drug Saf 1998; 7: S102CrossRef Evans SJW, Waller P, Davis S. Proportional reporting ratios: the uses of epidemiological methods of signal generation. Pharmacoepidemiol Drug Saf 1998; 7: S102CrossRef
5.
go back to reference Szarfman A, Machado SG, O’Neill RT. Use of screening algorithms and computer systems to efficiently signal higher-than-expected combinations of drugs and events in the US FDA’s spontaneous reports database. Drug Saf 2002; 25(6): 381–92 726PubMedCrossRef Szarfman A, Machado SG, O’Neill RT. Use of screening algorithms and computer systems to efficiently signal higher-than-expected combinations of drugs and events in the US FDA’s spontaneous reports database. Drug Saf 2002; 25(6): 381–92 726PubMedCrossRef
6.
go back to reference Bate A, Lindquist M, Edwards IR, et al. A Bayesian neural network method for adverse drug reaction signal generation. Eur J Clin Pharmacol 1998; 54: 315–21PubMedCrossRef Bate A, Lindquist M, Edwards IR, et al. A Bayesian neural network method for adverse drug reaction signal generation. Eur J Clin Pharmacol 1998; 54: 315–21PubMedCrossRef
7.
go back to reference van Puijenbroek EP, Bate A, Leufkens HGM, et al. A comparison of measures of disproportionality for signal detection in spontaneous reporting systems for adverse drug reactions. Pharmacoepidemiol Drug Saf 2002; 11: 3–10PubMedCrossRef van Puijenbroek EP, Bate A, Leufkens HGM, et al. A comparison of measures of disproportionality for signal detection in spontaneous reporting systems for adverse drug reactions. Pharmacoepidemiol Drug Saf 2002; 11: 3–10PubMedCrossRef
8.
go back to reference Kubota K, Koide D, Hirai T. Comparison of data mining methodologies using Japanese spontaneous reports. Pharmacoepidemiol Drug Saf 2004; 13: 387–94PubMedCrossRef Kubota K, Koide D, Hirai T. Comparison of data mining methodologies using Japanese spontaneous reports. Pharmacoepidemiol Drug Saf 2004; 13: 387–94PubMedCrossRef
9.
go back to reference Stahl M, Lindquist M, Edwards IR, et al. Introducing triage logic as a new strategy for the detection of signals in the WHO Drug Monitoring Database. Pharmacoipidemiol Drug Saf 2004; 13: 355–63CrossRef Stahl M, Lindquist M, Edwards IR, et al. Introducing triage logic as a new strategy for the detection of signals in the WHO Drug Monitoring Database. Pharmacoipidemiol Drug Saf 2004; 13: 355–63CrossRef
10.
go back to reference Follmann M, Michel A, Geyer C. Comparison of different methods for signal detection in the drug-safety database of a pharmaceutical company. In: the 20th International Conference of Pharmacoepidemiology (ICPE) & Therapeutic Risk Management; 2004 Aug 22–4; Bordeaux. Pharmacoepidemiol Drug Saf 2004; 13: S111CrossRef Follmann M, Michel A, Geyer C. Comparison of different methods for signal detection in the drug-safety database of a pharmaceutical company. In: the 20th International Conference of Pharmacoepidemiology (ICPE) & Therapeutic Risk Management; 2004 Aug 22–4; Bordeaux. Pharmacoepidemiol Drug Saf 2004; 13: S111CrossRef
11.
go back to reference Roux E, Thiessard F, Fourrier-Reglat A, et al. Evaluation of Statistical Association Measures for the Automatic Signal Generation in Pharmacovigilance. IEEE Trans Inf Technol Biomed 2005; 9(4): 518–27PubMedCrossRef Roux E, Thiessard F, Fourrier-Reglat A, et al. Evaluation of Statistical Association Measures for the Automatic Signal Generation in Pharmacovigilance. IEEE Trans Inf Technol Biomed 2005; 9(4): 518–27PubMedCrossRef
12.
go back to reference Almenoff J, Tonning JM, Gould AL, et al. Perspectives on the use of data mining in pharmacovigilance. Drug Saf 2005; 28(11): 981–1007PubMedCrossRef Almenoff J, Tonning JM, Gould AL, et al. Perspectives on the use of data mining in pharmacovigilance. Drug Saf 2005; 28(11): 981–1007PubMedCrossRef
13.
go back to reference DuMouchel W. Bayesian data mining in large frequency tables, with an application to the FDA spontaneous reporting system. Am Statist 1999; 53(3): 177–202 DuMouchel W. Bayesian data mining in large frequency tables, with an application to the FDA spontaneous reporting system. Am Statist 1999; 53(3): 177–202
14.
go back to reference DuMouchel W, Pregibon D. Empirical bayes screening for multi-item associations. Proceedings of the Seventh ACM SIGKDD International Conference on Knowledge Discovery and Data Mining; 2001 Aug 26–9; San Francisco, 67–76 DuMouchel W, Pregibon D. Empirical bayes screening for multi-item associations. Proceedings of the Seventh ACM SIGKDD International Conference on Knowledge Discovery and Data Mining; 2001 Aug 26–9; San Francisco, 67–76
15.
go back to reference Lawson DH, O’Connor PC, Jick H. Drug attributed alterations in potassium handling in congestive cardiac failure. Eur J Clin Pharmacol 1982; 23: 21–5PubMedCrossRef Lawson DH, O’Connor PC, Jick H. Drug attributed alterations in potassium handling in congestive cardiac failure. Eur J Clin Pharmacol 1982; 23: 21–5PubMedCrossRef
16.
go back to reference Evans SJW. Statistics: analysis and presentation of safety data. In: Talbot J, Waller P, editors. Stephens’ detection of new adverse drug reactions. 5th ed. West Sussex: Wiley, 2004: 316–25 Evans SJW. Statistics: analysis and presentation of safety data. In: Talbot J, Waller P, editors. Stephens’ detection of new adverse drug reactions. 5th ed. West Sussex: Wiley, 2004: 316–25
18.
go back to reference Waller P, Heeley E, Moseley J. Impact analysis of signal detected from spontaneous adverse drug reaction reporting data. Drug Saf 2005; 28(10): 843–50PubMedCrossRef Waller P, Heeley E, Moseley J. Impact analysis of signal detected from spontaneous adverse drug reaction reporting data. Drug Saf 2005; 28(10): 843–50PubMedCrossRef
19.
go back to reference Hazell L, Shakir SAW. Under-reporting of adverse drug reactions: a systematic review. Drug Saf 2006; 29(5): 385–96PubMedCrossRef Hazell L, Shakir SAW. Under-reporting of adverse drug reactions: a systematic review. Drug Saf 2006; 29(5): 385–96PubMedCrossRef
20.
go back to reference Weber JCP. Epidemiology of adverse reactions to non-steroidal antiinflammatory drugs. Adv Inflam Res 1984; 6: 1–7 Weber JCP. Epidemiology of adverse reactions to non-steroidal antiinflammatory drugs. Adv Inflam Res 1984; 6: 1–7
Metadata
Title
Criteria Revision and Performance Comparison of Three Methods of Signal Detection Applied to the Spontaneous Reporting Database of a Pharmaceutical Manufacturer
Authors
Yasuyuki Matsushita
Mr Yasufumi Kuroda
Shinpei Niwa
Satoshi Sonehara
Chikuma Hamada
Isao Yoshimura
Publication date
01-08-2007
Publisher
Springer International Publishing
Published in
Drug Safety / Issue 8/2007
Print ISSN: 0114-5916
Electronic ISSN: 1179-1942
DOI
https://doi.org/10.2165/00002018-200730080-00008

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