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Published in: Diagnostic Pathology 1/2012

Open Access 01-12-2012 | Research

Concurrent hypermethylation of DNMT1, MGMT and EGFR genes in progression of gliomas

Authors: Éva Gömöri, József Pál, Bernadett Kovács, Tamás Dóczi

Published in: Diagnostic Pathology | Issue 1/2012

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Abstract

Background

Gliomas are the most common neoplasm of the brain. High-grade gliomas often resist treatment even with aggressive surgical resection and adjuvant radiation and chemotherapy. Despite the combined treatment, they frequently recur with the same or higher-grade histology. Genetic instability is commonly associated with inactivation of the normal DNA repair function and tumour suppressor genes as well as activation of oncogenes resulting from alterations of promoter hypermethylation, but the molecular mechanisms of the histological and clinical progression of gliomas are still poorly understood.

Methods

This study involved longitudinal analysis samples of primary and recurrent gliomas to determine whether the progression of low- and high-grade gliomas is associated with the promoter methylation of the DNMT1, MGMT and EGFR genes by PCR-based restriction enzyme assay. Epigenetic inactivation of these three important glioma-associated genes was analyzed in paired biopsy samples from 18 patients with tumour recurrence.

Results

The methylation analysis of the CpG sites in the DNA methyltransferase (DNMT1) promoter revealed a total of 6 hypermethylations (6/18), the methylguanine-DNA methyltransferase (MGMT) promoter revealed a total of 10 hypermethylations (10/18) and the epithelial grow factor receptor (EGFR) promoter revealed a total of 12 (12/18) hypermethylations respectively in recurrent gliomas. The results demonstrated that DNMT1 promoter hypermethylation does not occur in low-grade gliomas, it was mainly observed in secondary glioblastomas. Additionally, the MGMT and EGFR promoter was hypermethylated in both low-and high-grade GLs and their corresponding histological transformed GLs.

Conclusion

This study has provided further evidence that the histological transformation and progression of gliomas may be associated with the inactivation of the EGFR and MGMT genes. It seems that EGFR and MGMT promoter hypermethylations are early events in the clonal evolution of gliomas and this gene inactivation has proved to be stable even in tumour recurrence. However, the DNMT hypermethylation is a late part of glioma progression.

Virtual slides

Appendix
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Literature
1.
go back to reference Rostomily RC, Spence AM, Duong D, McCormick K, Bland M, Berger MS: Multimodality management of recurrent adult malignant gliomas: results of a phase II multiagent chemotherapy study and analysis of cytoreductive surgery. Neurosurg. 1994, 35: 378-88. 10.1227/00006123-199409000-00004.CrossRef Rostomily RC, Spence AM, Duong D, McCormick K, Bland M, Berger MS: Multimodality management of recurrent adult malignant gliomas: results of a phase II multiagent chemotherapy study and analysis of cytoreductive surgery. Neurosurg. 1994, 35: 378-88. 10.1227/00006123-199409000-00004.CrossRef
3.
go back to reference Costanzi-Strauss E, Strauss BE, Naviaux RK, Haas M: Restoration of growth arrest by p16INK4, p21WAF1, pRB, and p53 is dependent on the integrity of the endogenous cell-cycle control pathways in human glioblastoma cell lines. Exp Cell Res. 1998, 238: 51-62. 10.1006/excr.1997.3810.CrossRefPubMed Costanzi-Strauss E, Strauss BE, Naviaux RK, Haas M: Restoration of growth arrest by p16INK4, p21WAF1, pRB, and p53 is dependent on the integrity of the endogenous cell-cycle control pathways in human glioblastoma cell lines. Exp Cell Res. 1998, 238: 51-62. 10.1006/excr.1997.3810.CrossRefPubMed
4.
go back to reference Newcomb EW, Cohen H, Lee SR, Bhalla SK, Bloom J, Hayes RL, Miller DC: Survival of patients with glioblastoma multiforme is not influenced by altered expression of p16, p53, EGFR, MDM2 or Bcl-2 genes. Brain Pathol. 1998, 8: 655-67.CrossRefPubMed Newcomb EW, Cohen H, Lee SR, Bhalla SK, Bloom J, Hayes RL, Miller DC: Survival of patients with glioblastoma multiforme is not influenced by altered expression of p16, p53, EGFR, MDM2 or Bcl-2 genes. Brain Pathol. 1998, 8: 655-67.CrossRefPubMed
5.
go back to reference Dams E, Van de Kelft EJZ, Martin JJ, Verlooy J, Willems PJ: Instability of microsatellites in human gliomas. Cancer Res. 1995, 55: 1547-49.PubMed Dams E, Van de Kelft EJZ, Martin JJ, Verlooy J, Willems PJ: Instability of microsatellites in human gliomas. Cancer Res. 1995, 55: 1547-49.PubMed
6.
go back to reference Zhu JJ, Santarius T, Wu X, Tsong J, Guha A, Wu JK, Hudson TJ, Black PM: Screening for loss of heterozygosity and microsatellite instability in oligodendrogliomas. Genes Chrom Cancer. 1998, 21: 207-16. 10.1002/(SICI)1098-2264(199803)21:3<207::AID-GCC4>3.0.CO;2-3.CrossRefPubMed Zhu JJ, Santarius T, Wu X, Tsong J, Guha A, Wu JK, Hudson TJ, Black PM: Screening for loss of heterozygosity and microsatellite instability in oligodendrogliomas. Genes Chrom Cancer. 1998, 21: 207-16. 10.1002/(SICI)1098-2264(199803)21:3<207::AID-GCC4>3.0.CO;2-3.CrossRefPubMed
7.
go back to reference Tso CL, Freije WA, Day A, Chen Z, Merriman B, Perlina A, Lee Y, Dia EQ, Yoshimoto K, Mischel PS, Liau LM, Cloughesy TF, Nelson SF: Distinct transcription profiles of primary and secondary glioblastoma subgroups. Cancer Res. 2006, 66: 159-67. 10.1158/0008-5472.CAN-05-0077.CrossRefPubMed Tso CL, Freije WA, Day A, Chen Z, Merriman B, Perlina A, Lee Y, Dia EQ, Yoshimoto K, Mischel PS, Liau LM, Cloughesy TF, Nelson SF: Distinct transcription profiles of primary and secondary glioblastoma subgroups. Cancer Res. 2006, 66: 159-67. 10.1158/0008-5472.CAN-05-0077.CrossRefPubMed
8.
go back to reference Arteaga CL: The epidermal growth factor receptor: from mutant oncogene in nonhuman cancers to therapeutic target in human neoplasia. J Clin Oncol. 2001, 19: 32S-40S.PubMed Arteaga CL: The epidermal growth factor receptor: from mutant oncogene in nonhuman cancers to therapeutic target in human neoplasia. J Clin Oncol. 2001, 19: 32S-40S.PubMed
9.
go back to reference Yu J, Zhang H, Gu J, Lin S, Li J, Lu W, Wang Y, Zhul: Methylation profiles of thirty four promoter-CpG islands and concordant methylation behaviours of sixteen genes that may contribute to carcinogenesis of astrocytoma. BMC Cancer. 2004, 4: 65-10.1186/1471-2407-4-65.PubMedCentralCrossRefPubMed Yu J, Zhang H, Gu J, Lin S, Li J, Lu W, Wang Y, Zhul: Methylation profiles of thirty four promoter-CpG islands and concordant methylation behaviours of sixteen genes that may contribute to carcinogenesis of astrocytoma. BMC Cancer. 2004, 4: 65-10.1186/1471-2407-4-65.PubMedCentralCrossRefPubMed
10.
go back to reference Bigey P, Ramchandani S, Theberge J, Araujo FD, Szyf M: Transcriptional regulation of the human DNA Methyltransferase (dnmt1) gene. Gene. 2000, 242: 407-18. 10.1016/S0378-1119(99)00501-6.CrossRefPubMed Bigey P, Ramchandani S, Theberge J, Araujo FD, Szyf M: Transcriptional regulation of the human DNA Methyltransferase (dnmt1) gene. Gene. 2000, 242: 407-18. 10.1016/S0378-1119(99)00501-6.CrossRefPubMed
11.
go back to reference Etoh T, Kanai Y, Ushijima S, Nakagawa T, Nakanishi Y, Sasako M, Kitano S, Hirohashi S: Increased DNA methyltransferase 1 (DNMT1) protein expression correlates significantly with poorer tumor differentiation and frequent DNA hypermethylation of multiple CpG islands in gastric cancers. Am J Pathol. 2004, 164: 689-99. 10.1016/S0002-9440(10)63156-2.PubMedCentralCrossRefPubMed Etoh T, Kanai Y, Ushijima S, Nakagawa T, Nakanishi Y, Sasako M, Kitano S, Hirohashi S: Increased DNA methyltransferase 1 (DNMT1) protein expression correlates significantly with poorer tumor differentiation and frequent DNA hypermethylation of multiple CpG islands in gastric cancers. Am J Pathol. 2004, 164: 689-99. 10.1016/S0002-9440(10)63156-2.PubMedCentralCrossRefPubMed
12.
go back to reference Jair KW, Bachman KE, Suzuki H, Ting AH, Rhee I, Yen RW, Baylin SB, Schuebel KE: De novo CpG island methylation in human cancer cells. Cancer Res. 2006, 66: 682-92. 10.1158/0008-5472.CAN-05-1980.CrossRefPubMed Jair KW, Bachman KE, Suzuki H, Ting AH, Rhee I, Yen RW, Baylin SB, Schuebel KE: De novo CpG island methylation in human cancer cells. Cancer Res. 2006, 66: 682-92. 10.1158/0008-5472.CAN-05-1980.CrossRefPubMed
13.
go back to reference Ishii T, Kohu K, Yamada S, Ishidoya S, Kanto S, Fuji H, Moriya T, Satake M, Arai Y: Up-regulation of DNA-methyltransferase 3A expression is associated with hypomethylation of intron 25 in human testicular germ cell tumors. Tohoku J Exp Med. 2007, 212: 177-90. 10.1620/tjem.212.177.CrossRefPubMed Ishii T, Kohu K, Yamada S, Ishidoya S, Kanto S, Fuji H, Moriya T, Satake M, Arai Y: Up-regulation of DNA-methyltransferase 3A expression is associated with hypomethylation of intron 25 in human testicular germ cell tumors. Tohoku J Exp Med. 2007, 212: 177-90. 10.1620/tjem.212.177.CrossRefPubMed
14.
go back to reference Antoun G, Baylin SB, Ali-Osman F: DNA methyltransferase levels and altered CpG methylation in the total genome and in the GSTP1 gene in human glioma cells transfected with sense and antisense DNA methyltransferase cDNA. J Cell Biochem. 2000, 77: 372-81. 10.1002/(SICI)1097-4644(20000601)77:3<372::AID-JCB3>3.0.CO;2-P.CrossRefPubMed Antoun G, Baylin SB, Ali-Osman F: DNA methyltransferase levels and altered CpG methylation in the total genome and in the GSTP1 gene in human glioma cells transfected with sense and antisense DNA methyltransferase cDNA. J Cell Biochem. 2000, 77: 372-81. 10.1002/(SICI)1097-4644(20000601)77:3<372::AID-JCB3>3.0.CO;2-P.CrossRefPubMed
15.
go back to reference Hegi ME, Diserens AC, Godard S, Dietrich PY, Regli L, Ostermann S, Otten P, Van Melle G, de Tribolet N, Stupp R: Clinical trial substantiates the predictive value of O-6- methylguanine-DNA methyltransferase promoter methylation in glioblastoma patients treated with temozolomide. Clin Cancer Res. 2004, 10: 1871-4. 10.1158/1078-0432.CCR-03-0384.CrossRefPubMed Hegi ME, Diserens AC, Godard S, Dietrich PY, Regli L, Ostermann S, Otten P, Van Melle G, de Tribolet N, Stupp R: Clinical trial substantiates the predictive value of O-6- methylguanine-DNA methyltransferase promoter methylation in glioblastoma patients treated with temozolomide. Clin Cancer Res. 2004, 10: 1871-4. 10.1158/1078-0432.CCR-03-0384.CrossRefPubMed
16.
go back to reference Nakamura M, Watanabe T, Yonekawa Y, Kleihues P, Ohgaki H: Promoter methylation of the DNA repair gene MGMT in astrocytomas is frequently associated with G:C --> A:T mutations of the TP53 tumor suppressor gene. Carcinogenesis. 2001, 22: 1715-9. Nakamura M, Watanabe T, Yonekawa Y, Kleihues P, Ohgaki H: Promoter methylation of the DNA repair gene MGMT in astrocytomas is frequently associated with G:C --> A:T mutations of the TP53 tumor suppressor gene. Carcinogenesis. 2001, 22: 1715-9.
17.
go back to reference Möllemann M, Wolter M, Felsberg J, Collins VP, Reifenberger G: Frequent promoter hypermethylation and low expression of the MGMT gene in oligodendroglial tumors. Int J Cancer. 2005, 113: 379-85. 10.1002/ijc.20575.CrossRefPubMed Möllemann M, Wolter M, Felsberg J, Collins VP, Reifenberger G: Frequent promoter hypermethylation and low expression of the MGMT gene in oligodendroglial tumors. Int J Cancer. 2005, 113: 379-85. 10.1002/ijc.20575.CrossRefPubMed
18.
go back to reference Kleinhues P, Cavenee WK: WHO classification of tumours. Pathology and genetics of tumors of the nervous system. 2007, Lion: IARC Press Kleinhues P, Cavenee WK: WHO classification of tumours. Pathology and genetics of tumors of the nervous system. 2007, Lion: IARC Press
19.
go back to reference Herman JG, Graff JR, Myöhänen S, Nelkin BD, Baylin SB: Methylation-specific PCR: a novel PCR assay for methylation status of CpG islands. Proc Natl Acad Sci USA. 1996, 3 (18): 9821-6. 93CrossRef Herman JG, Graff JR, Myöhänen S, Nelkin BD, Baylin SB: Methylation-specific PCR: a novel PCR assay for methylation status of CpG islands. Proc Natl Acad Sci USA. 1996, 3 (18): 9821-6. 93CrossRef
20.
go back to reference Karpf AR, Matsui S: Genetic disruption of cytosine DNA methyltransferase enzymes induces chromosomal instability in human cancer cells. Cancer Res. 2005, 65: 8635-9. 10.1158/0008-5472.CAN-05-1961.CrossRefPubMed Karpf AR, Matsui S: Genetic disruption of cytosine DNA methyltransferase enzymes induces chromosomal instability in human cancer cells. Cancer Res. 2005, 65: 8635-9. 10.1158/0008-5472.CAN-05-1961.CrossRefPubMed
21.
go back to reference Gömöri E, Pál J, Mészáros I, Dóczi T, Matolcsy A: Epigenetic inactivation of the hMLH1 gene in progression of gliomas. Diagn Mol Pathol. 2007, 16: 104-7. 10.1097/PDM.0b013e318033f140.CrossRefPubMed Gömöri E, Pál J, Mészáros I, Dóczi T, Matolcsy A: Epigenetic inactivation of the hMLH1 gene in progression of gliomas. Diagn Mol Pathol. 2007, 16: 104-7. 10.1097/PDM.0b013e318033f140.CrossRefPubMed
22.
go back to reference Felsberg J, Thon N, Eigenbrod S, Hentschel B, Sabel MC, Westphal M, Schackert G, Kreth FW, Pietsch T, Löffler M, Weller M, Reifenberger G, Tonn JC, German Glioma Network: Promoter methylation and expression of MGMT and the DNA mismatch repair genes MLH1, MSH2, MSH6, and PMS2 in paired primary and recurrent glioblastomas. Int J Cancer. 2011 Felsberg J, Thon N, Eigenbrod S, Hentschel B, Sabel MC, Westphal M, Schackert G, Kreth FW, Pietsch T, Löffler M, Weller M, Reifenberger G, Tonn JC, German Glioma Network: Promoter methylation and expression of MGMT and the DNA mismatch repair genes MLH1, MSH2, MSH6, and PMS2 in paired primary and recurrent glioblastomas. Int J Cancer. 2011
23.
go back to reference Kreth S, Thon N, Eigenbrod S, Lutz J, Ledderose C, Egensperger R, Tonn JC, Kretzschmar HA, Hinske LC, Kreth FW: O6-Methylguanine-DNA Methyltransferase (MGMT) mRNA Expression Predicts Outcome in Malignant Glioma Independent of MGMT Promoter Methylation. PLoS One. 2011, 6 (2): e17156-10.1371/journal.pone.0017156.PubMedCentralCrossRefPubMed Kreth S, Thon N, Eigenbrod S, Lutz J, Ledderose C, Egensperger R, Tonn JC, Kretzschmar HA, Hinske LC, Kreth FW: O6-Methylguanine-DNA Methyltransferase (MGMT) mRNA Expression Predicts Outcome in Malignant Glioma Independent of MGMT Promoter Methylation. PLoS One. 2011, 6 (2): e17156-10.1371/journal.pone.0017156.PubMedCentralCrossRefPubMed
24.
go back to reference Gonzalez-Gomez P, Bello MJ, Arjona D, Lomas J, Alonso ME, De Campos JM, Vaquero J, Isla A, Gutierrez M, Rey JA: Promoter hypermathylation of multiple genes in astrocytic gliomas. Int J Oncol. 2003, 22: 601-8.PubMed Gonzalez-Gomez P, Bello MJ, Arjona D, Lomas J, Alonso ME, De Campos JM, Vaquero J, Isla A, Gutierrez M, Rey JA: Promoter hypermathylation of multiple genes in astrocytic gliomas. Int J Oncol. 2003, 22: 601-8.PubMed
25.
go back to reference Dong SM, Pang JC, Poon W, Hu J, To KF, Chang AR, Ng HK: Concurrent hypermethylation of multiple genes is associated with grade of oligodendroglial tumors. J. Neuropath Exp Neurol. 2001, 60: 808-16.PubMed Dong SM, Pang JC, Poon W, Hu J, To KF, Chang AR, Ng HK: Concurrent hypermethylation of multiple genes is associated with grade of oligodendroglial tumors. J. Neuropath Exp Neurol. 2001, 60: 808-16.PubMed
26.
go back to reference Montero AJ, Díaz-Montero CM, Mao L, Youssef EM, Estecio M, Shen L, Issa JP: Epigenetic inactivation of EGFR by CpG island hypermethylation in cancer. Cancer Biol Ther. 2006, 5: 1494-501. 10.4161/cbt.5.11.3299.CrossRefPubMed Montero AJ, Díaz-Montero CM, Mao L, Youssef EM, Estecio M, Shen L, Issa JP: Epigenetic inactivation of EGFR by CpG island hypermethylation in cancer. Cancer Biol Ther. 2006, 5: 1494-501. 10.4161/cbt.5.11.3299.CrossRefPubMed
27.
go back to reference Halatsch ME, Schmidt U, Behnke-Mursch J, Unterberg A, Wirtz CR: Epidermal growth factor receptor inhibition for the treatment of glioblastoma multiforme and other malignant brain tumours. Cancer Treat Rev. 2006, 32: 74-89. 10.1016/j.ctrv.2006.01.003.CrossRefPubMed Halatsch ME, Schmidt U, Behnke-Mursch J, Unterberg A, Wirtz CR: Epidermal growth factor receptor inhibition for the treatment of glioblastoma multiforme and other malignant brain tumours. Cancer Treat Rev. 2006, 32: 74-89. 10.1016/j.ctrv.2006.01.003.CrossRefPubMed
28.
go back to reference Szyf M: Targeting DNA methylation in cancer. Bull Cancer. 2006, 93: 961-72.PubMed Szyf M: Targeting DNA methylation in cancer. Bull Cancer. 2006, 93: 961-72.PubMed
29.
go back to reference Szyf M: Therapeutic implications of DNA methylation. Future Oncol. 2005, 1: 125-35. 10.1517/14796694.1.1.125.CrossRefPubMed Szyf M: Therapeutic implications of DNA methylation. Future Oncol. 2005, 1: 125-35. 10.1517/14796694.1.1.125.CrossRefPubMed
Metadata
Title
Concurrent hypermethylation of DNMT1, MGMT and EGFR genes in progression of gliomas
Authors
Éva Gömöri
József Pál
Bernadett Kovács
Tamás Dóczi
Publication date
01-12-2012
Publisher
BioMed Central
Published in
Diagnostic Pathology / Issue 1/2012
Electronic ISSN: 1746-1596
DOI
https://doi.org/10.1186/1746-1596-7-8

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