Skip to main content
Top
Published in: Annals of Surgical Oncology 13/2019

01-12-2019 | Translational Research and Biomarkers

Comprehensive Exploration to Identify Predictive DNA Markers of ΔNp63/SOX2 in Drug Resistance in Human Esophageal Squamous Cell Carcinoma

Authors: Yosuke Ooizumi, MD, Keita Kojima, MD, Kazuharu Igarashi, MD, Yoko Tanaka, MD, Hiroki Harada, MD, Kazuko Yokota, MD, Takeshi Kaida, MD, Satoru Ishii, MD, PhD, Toshimichi Tanaka, MD, PhD, Keigo Yokoi, MD, PhD, Nobuyuki Nishizawa, MD, PhD, Marie Washio, MD, Hideki Ushiku, MD, PhD, Hiroshi Katoh, MD, PhD, Yoshimasa Kosaka, MD, PhD, Hiroaki Mieno, MD, PhD, Kei Hosoda, MD, PhD, Masahiko Watanabe, MD, PhD, FACS, Chikatoshi Katada, MD, PhD, Naoki Hiki, MD, PhD, Keishi Yamashita, MD, PhD, FACS

Published in: Annals of Surgical Oncology | Issue 13/2019

Login to get access

Abstract

Background

OBP-801 is a novel histone deacetylase inhibitor being developed as an anticancer drug. In this study, we explored genes to predict drug resistance in human cancer.

Methods

OBP-801 resistance was assessed in 37 strains of human cancer cell lines. Expression microarrays harboring 54,675 genes were used to focus on candidate genes, which were validated for both functional and clinical relevance in esophageal squamous cell carcinoma (ESCC).

Results

OBP-801 is sensitive to esophageal, gastric, and thyroid cancer, and resistant to some esophageal and colorectal cancers. We therefore used ESCC to explore genes. Comprehensive exploration focused on ΔNp63/SOX2, which were both genetically and epigenetically overexpressed in ESCC. Genomic amplifications of ΔNp63/SOX2 were tightly correlated each other (r = 0.81). Importantly, genomic amplification of ΔNp63/SOX2 in the resected tumors after neoadjuvant chemotherapy was significantly associated with histological grade of response (G1). Forced expression of either of these two genes did not induce each other, suggesting that their functional relevances were independent and showed robust drug resistance in OBP-801, as well as 5-fluorouracil. Furthermore, ΔNp63 could exert a potent oncogenic potential. RNA interference of ΔNp63 supported its oncological properties, as well as drug resistance.

Conclusion

Comprehensive exploration of genes involved in anticancer drug residence could identify critical oncogenes of ΔNp63/SOX2 that would predict chemotherapy response in ESCC.
Appendix
Available only for authorised users
Literature
1.
go back to reference Shindoh N, Mori M, Terada Y, Oda K, et al. YM753, a novel histone deacetylase inhibitor, exhibits antitumor activity with selective, sustained accumulation of acetylated histones in tumors in the WiDr xenograft model. Int J Oncol. 2008;32(3):545–55.PubMed Shindoh N, Mori M, Terada Y, Oda K, et al. YM753, a novel histone deacetylase inhibitor, exhibits antitumor activity with selective, sustained accumulation of acetylated histones in tumors in the WiDr xenograft model. Int J Oncol. 2008;32(3):545–55.PubMed
2.
go back to reference Fraga MF, Ballestar E, Villar-Garea A, Boix-Chornet M, et al. Loss of acetylation at Lys16 and trimethylation at Lys20 of histone H4 is a common hallmark of human cancer. Nat Genet. 2005;37(4):391–400.CrossRef Fraga MF, Ballestar E, Villar-Garea A, Boix-Chornet M, et al. Loss of acetylation at Lys16 and trimethylation at Lys20 of histone H4 is a common hallmark of human cancer. Nat Genet. 2005;37(4):391–400.CrossRef
3.
go back to reference Huang BH, Laban M, Leung CH, Lee L, et al. Inhibition of histone deacetylase 2 increases apoptosis and p21Cip1/WAF1 expression, independent of histone deacetylase 1. Cell Death Differ. 2005;12(4):395–04.CrossRef Huang BH, Laban M, Leung CH, Lee L, et al. Inhibition of histone deacetylase 2 increases apoptosis and p21Cip1/WAF1 expression, independent of histone deacetylase 1. Cell Death Differ. 2005;12(4):395–04.CrossRef
4.
go back to reference Zhu P, Martin E, Mengwasser J, Schlag P, Janssen KP, Göttlicher M. Induction of HDAC2 expression upon loss of APC in colorectal tumorigenesis. Cancer Cell. 2004;5(5):455–63.CrossRef Zhu P, Martin E, Mengwasser J, Schlag P, Janssen KP, Göttlicher M. Induction of HDAC2 expression upon loss of APC in colorectal tumorigenesis. Cancer Cell. 2004;5(5):455–63.CrossRef
5.
go back to reference Wilson AJ, Byun DS, Popova N, Murray LB, et al. Histone deacetylase 3 (HDAC3) and other class I HDACs regulate colon cell maturation and p21 expression and arederegulated in human colon cancer. J Biol Chem. 2006;281(19):13548–58.CrossRef Wilson AJ, Byun DS, Popova N, Murray LB, et al. Histone deacetylase 3 (HDAC3) and other class I HDACs regulate colon cell maturation and p21 expression and arederegulated in human colon cancer. J Biol Chem. 2006;281(19):13548–58.CrossRef
6.
go back to reference Johnstone RW. Histone-deacetylase inhibitors: novel drugs for the treatment of cancer. Nat Rev Drug Discov. 2002;1(4):287–99.CrossRef Johnstone RW. Histone-deacetylase inhibitors: novel drugs for the treatment of cancer. Nat Rev Drug Discov. 2002;1(4):287–99.CrossRef
7.
go back to reference Minucci S, Pelicci P. Histone deacetylase inhibitors and the promise of epigenetic (and more) treatments for cancer. Nat Rev Cancer. 2006;6(1):38–51.CrossRef Minucci S, Pelicci P. Histone deacetylase inhibitors and the promise of epigenetic (and more) treatments for cancer. Nat Rev Cancer. 2006;6(1):38–51.CrossRef
8.
go back to reference Kelly WK, O’Connor OA, Krug LM, Chiao JH, et al. Phase I study of an oral histone deacetylase inhibitor, suberoylanilide hydroxamic acid, in patients with advanced cancer. J Clin Oncol 2005;23(17):3923–31.CrossRef Kelly WK, O’Connor OA, Krug LM, Chiao JH, et al. Phase I study of an oral histone deacetylase inhibitor, suberoylanilide hydroxamic acid, in patients with advanced cancer. J Clin Oncol 2005;23(17):3923–31.CrossRef
9.
go back to reference O’Connor OA, Heaney ML, Schwartz L, Richardson S, et al. Clinical experience with intravenous and oral formulations of the novel histone deacetylase inhibitor suberoylanilide hydroxamic acid in patients with advanced hematologic malignancies. J Clin Oncol. 2006;24(1):166–73.CrossRef O’Connor OA, Heaney ML, Schwartz L, Richardson S, et al. Clinical experience with intravenous and oral formulations of the novel histone deacetylase inhibitor suberoylanilide hydroxamic acid in patients with advanced hematologic malignancies. J Clin Oncol. 2006;24(1):166–73.CrossRef
10.
go back to reference Marks PA, Breslow R. Dimethyl sulfoxide to vorinostat: development of this histone deacetylase inhibitor as an anticancer drug. Nat Biotechnol. 2007;25:84–90.CrossRef Marks PA, Breslow R. Dimethyl sulfoxide to vorinostat: development of this histone deacetylase inhibitor as an anticancer drug. Nat Biotechnol. 2007;25:84–90.CrossRef
11.
go back to reference Kikuchi M, Yamashita K, Waraya M, Minatani N et al. Epigenetic regulation of ZEB1-RAB25/ESRP1 axis plays a critical role in phenylbutyrate treatment-resistant breast cancer. Oncotarget. 2016;7(2):1741–53.CrossRef Kikuchi M, Yamashita K, Waraya M, Minatani N et al. Epigenetic regulation of ZEB1-RAB25/ESRP1 axis plays a critical role in phenylbutyrate treatment-resistant breast cancer. Oncotarget. 2016;7(2):1741–53.CrossRef
12.
go back to reference Ooki A, Yamashita K, Kikuchi S, Sakuramoto S, Katada N, Watanabe M. Phosphatase of regenerating liver-3 as a convergent therapeutic target for lymph node metastasis in esophageal squamous cell carcinoma. Int J Cancer. 2010;127(3):543–54.CrossRef Ooki A, Yamashita K, Kikuchi S, Sakuramoto S, Katada N, Watanabe M. Phosphatase of regenerating liver-3 as a convergent therapeutic target for lymph node metastasis in esophageal squamous cell carcinoma. Int J Cancer. 2010;127(3):543–54.CrossRef
13.
go back to reference Ooki A, Yamashita K, Kikuchi S, et al. Therapeutic potential of PRL-3 targeting and clinical significance of PRL-3 genomic amplification in gastric cancer. BMC Cancer. 2011;11:122.CrossRef Ooki A, Yamashita K, Kikuchi S, et al. Therapeutic potential of PRL-3 targeting and clinical significance of PRL-3 genomic amplification in gastric cancer. BMC Cancer. 2011;11:122.CrossRef
14.
go back to reference Yokoi K, Yamashita K, Ishii S, Tanaka T, et al. Comprehensive molecular exploration identified promoter DNA methylation of the CRBP1 gene as a determinant of radiation sensitivity in rectal cancer. Br J Cancer. 2017;116(8):1046–56.CrossRef Yokoi K, Yamashita K, Ishii S, Tanaka T, et al. Comprehensive molecular exploration identified promoter DNA methylation of the CRBP1 gene as a determinant of radiation sensitivity in rectal cancer. Br J Cancer. 2017;116(8):1046–56.CrossRef
15.
go back to reference Waraya M, Yamashita K, Katoh H, et al. Cancer specific promoter CpG Islands hypermethylation of HOP homeobox (HOPX) gene and its potential tumor suppressive role in pancreatic carcinogenesis. BMC Cancer. 2012;12:397.CrossRef Waraya M, Yamashita K, Katoh H, et al. Cancer specific promoter CpG Islands hypermethylation of HOP homeobox (HOPX) gene and its potential tumor suppressive role in pancreatic carcinogenesis. BMC Cancer. 2012;12:397.CrossRef
16.
go back to reference Wolff AC, Hammond ME, Schwartz JN, et al. American Society of Clinical Oncology/College of American Pathologists guideline recommendations for human epidermal growth factor receptor 2 testing in breast cancer. Arch Pathol Lab Med. 2007;131(1):18–43. Wolff AC, Hammond ME, Schwartz JN, et al. American Society of Clinical Oncology/College of American Pathologists guideline recommendations for human epidermal growth factor receptor 2 testing in breast cancer. Arch Pathol Lab Med. 2007;131(1):18–43.
17.
go back to reference Cancer Genome Atlas Research Network, Analysis Working Group, Asan University, BC Cancer Agency, Brigham and Women’s Hospital, Broad Institute, et al. Integrated genomic characterization of oesophageal carcinoma. Nature. 2017;541(7636):169–75. Cancer Genome Atlas Research Network, Analysis Working Group, Asan University, BC Cancer Agency, Brigham and Women’s Hospital, Broad Institute, et al. Integrated genomic characterization of oesophageal carcinoma. Nature. 2017;541(7636):169–75.
18.
go back to reference Bass AJ, Watanabe H, Mermel CH, Yu S, et al. SOX2 is an amplified lineage-survival oncogene in lung and esophageal squamous cell carcinomas. Nat Genet. 2009;41(11):1238–42.CrossRef Bass AJ, Watanabe H, Mermel CH, Yu S, et al. SOX2 is an amplified lineage-survival oncogene in lung and esophageal squamous cell carcinomas. Nat Genet. 2009;41(11):1238–42.CrossRef
19.
go back to reference Watanabe H, Ma Q, Peng S, Adelmant G, et al. SOX2 and p63 colocalize at genetic loci in squamous cell carcinomas. J Clin Invest. 2014;124(4):1636–45.CrossRef Watanabe H, Ma Q, Peng S, Adelmant G, et al. SOX2 and p63 colocalize at genetic loci in squamous cell carcinomas. J Clin Invest. 2014;124(4):1636–45.CrossRef
20.
go back to reference Boumahdi S, Driessens G, Lapouge G, Rorive S, et al. SOX2 controls tumour initiation and cancer stem-cell functions in squamous-cell carcinoma. Nature. 2014;511(7508):246–50.CrossRef Boumahdi S, Driessens G, Lapouge G, Rorive S, et al. SOX2 controls tumour initiation and cancer stem-cell functions in squamous-cell carcinoma. Nature. 2014;511(7508):246–50.CrossRef
21.
go back to reference Siegle JM, Basin A, Sastre-Perona A, Yonekubo Y, et al. SOX2 is a cancer-specific regulator of tumour initiating potential in cutaneous squamous cell carcinoma. Nat Commun. 2014;31(5):4511.CrossRef Siegle JM, Basin A, Sastre-Perona A, Yonekubo Y, et al. SOX2 is a cancer-specific regulator of tumour initiating potential in cutaneous squamous cell carcinoma. Nat Commun. 2014;31(5):4511.CrossRef
22.
go back to reference Huang H, Zhang W, Pan Y, Gao Y, et al. YAP Suppresses lung squamous cell carcinoma progression via deregulation of the DNp63-GPX2 axis and ROS accumulation. Cancer Res. 2017;77(21):5769–81.CrossRef Huang H, Zhang W, Pan Y, Gao Y, et al. YAP Suppresses lung squamous cell carcinoma progression via deregulation of the DNp63-GPX2 axis and ROS accumulation. Cancer Res. 2017;77(21):5769–81.CrossRef
23.
go back to reference Tanaka T, Kojima K, Yokota K, et al. Comprehensive genetic search to clarify the molecular mechanism of drug resistance identifies ASCL2-LEF1/TSPAN8 axis in colorectal cancer. Ann Surg Oncol. 2019;26(5):1401–11.CrossRef Tanaka T, Kojima K, Yokota K, et al. Comprehensive genetic search to clarify the molecular mechanism of drug resistance identifies ASCL2-LEF1/TSPAN8 axis in colorectal cancer. Ann Surg Oncol. 2019;26(5):1401–11.CrossRef
24.
go back to reference Hibi K, Trink B, Patturajan M, et al. AIS is an oncogene amplified in squamous cell carcinoma. Proc Natl Acad Sci USA. 2000;97(10):5462–7.CrossRef Hibi K, Trink B, Patturajan M, et al. AIS is an oncogene amplified in squamous cell carcinoma. Proc Natl Acad Sci USA. 2000;97(10):5462–7.CrossRef
25.
go back to reference Campbell JD, Yau C, Bowlby R, Liu Y, et al. Genomic, pathway network, and immunologic features distinguishing squamous carcinomas. Cell Rep. 2018;23(1):194–212.CrossRef Campbell JD, Yau C, Bowlby R, Liu Y, et al. Genomic, pathway network, and immunologic features distinguishing squamous carcinomas. Cell Rep. 2018;23(1):194–212.CrossRef
26.
go back to reference Yamashita K, Hosoda K, Moriya H, Katada C, et al. Prognostic advantage of docetaxel/cisplatin/5-fluorouracil neoadjuvant chemotherapy in clinical stage II/III esophageal squamous cell carcinoma due to excellent control of preoperative disease and postoperative lymph node recurrence. Oncology. 2017;92(4):221–8.CrossRef Yamashita K, Hosoda K, Moriya H, Katada C, et al. Prognostic advantage of docetaxel/cisplatin/5-fluorouracil neoadjuvant chemotherapy in clinical stage II/III esophageal squamous cell carcinoma due to excellent control of preoperative disease and postoperative lymph node recurrence. Oncology. 2017;92(4):221–8.CrossRef
27.
go back to reference Yamashita K, Upadhyay S, Osada M, Hoque MO, et al. Pharmacologic unmasking of epigenetically silenced tumor suppressor genes in esophageal squamous cell carcinoma. Cancer Cell. 2002;2(6):485–95.CrossRef Yamashita K, Upadhyay S, Osada M, Hoque MO, et al. Pharmacologic unmasking of epigenetically silenced tumor suppressor genes in esophageal squamous cell carcinoma. Cancer Cell. 2002;2(6):485–95.CrossRef
28.
go back to reference Ishii S, Yamashita K, Harada H, et al. The H19-PEG10/IGF2BP3 axis promotes gastric cancer progression in patients with high lymph node ratios. Oncotarget. 2017;8(43):74567–81.CrossRef Ishii S, Yamashita K, Harada H, et al. The H19-PEG10/IGF2BP3 axis promotes gastric cancer progression in patients with high lymph node ratios. Oncotarget. 2017;8(43):74567–81.CrossRef
29.
go back to reference Osada M, Park H, Nagakawa Y, Yamashita K, et al. Differential recognition of response elements determines target gene specificity for p53 and p63. Mol Cell Biol. 2005;25(14):6077–89.CrossRef Osada M, Park H, Nagakawa Y, Yamashita K, et al. Differential recognition of response elements determines target gene specificity for p53 and p63. Mol Cell Biol. 2005;25(14):6077–89.CrossRef
30.
go back to reference Tanaka T, Watanabe M, Yamashita K. Potential therapeutic targets of TP53 gene in the context of its classically canonical functions and its latest non-canonical functions in human cancer. Oncotarget. 2018;9(22):16234–47.CrossRef Tanaka T, Watanabe M, Yamashita K. Potential therapeutic targets of TP53 gene in the context of its classically canonical functions and its latest non-canonical functions in human cancer. Oncotarget. 2018;9(22):16234–47.CrossRef
31.
go back to reference Abraham CG, Ludwig MP, Andrysik Z, et al. DeltaNp63alpha suppresses TGFB2 expression and RHOA activity to drive cell proliferation in squamous cell carcinomas. Cell Rep. 2018;24(12):3224–36.CrossRef Abraham CG, Ludwig MP, Andrysik Z, et al. DeltaNp63alpha suppresses TGFB2 expression and RHOA activity to drive cell proliferation in squamous cell carcinomas. Cell Rep. 2018;24(12):3224–36.CrossRef
32.
go back to reference Takahashi K, Tanabe K, Ohnuki M, Narita M, Ichisaka T, Tomoda K, Yamanaka S. Induction of pluripotent stem cells from adult human fibroblasts by defined factors. Cell. 2007;131(5):861–72.CrossRef Takahashi K, Tanabe K, Ohnuki M, Narita M, Ichisaka T, Tomoda K, Yamanaka S. Induction of pluripotent stem cells from adult human fibroblasts by defined factors. Cell. 2007;131(5):861–72.CrossRef
Metadata
Title
Comprehensive Exploration to Identify Predictive DNA Markers of ΔNp63/SOX2 in Drug Resistance in Human Esophageal Squamous Cell Carcinoma
Authors
Yosuke Ooizumi, MD
Keita Kojima, MD
Kazuharu Igarashi, MD
Yoko Tanaka, MD
Hiroki Harada, MD
Kazuko Yokota, MD
Takeshi Kaida, MD
Satoru Ishii, MD, PhD
Toshimichi Tanaka, MD, PhD
Keigo Yokoi, MD, PhD
Nobuyuki Nishizawa, MD, PhD
Marie Washio, MD
Hideki Ushiku, MD, PhD
Hiroshi Katoh, MD, PhD
Yoshimasa Kosaka, MD, PhD
Hiroaki Mieno, MD, PhD
Kei Hosoda, MD, PhD
Masahiko Watanabe, MD, PhD, FACS
Chikatoshi Katada, MD, PhD
Naoki Hiki, MD, PhD
Keishi Yamashita, MD, PhD, FACS
Publication date
01-12-2019
Publisher
Springer International Publishing
Published in
Annals of Surgical Oncology / Issue 13/2019
Print ISSN: 1068-9265
Electronic ISSN: 1534-4681
DOI
https://doi.org/10.1245/s10434-019-07795-w

Other articles of this Issue 13/2019

Annals of Surgical Oncology 13/2019 Go to the issue