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Published in: Cancer Immunology, Immunotherapy 7/2007

01-07-2007 | Original Article

Comprehensive epitope mapping of the Epstein–Barr virus latent membrane protein-2 in normal, non tumor-bearing individuals

Authors: Maurizio Provenzano, Silvia Selleri, Ping Jin, Ena Wang, Rosemary Werden, Stephanie Slezak, Sharon D. Adams, Monica C. Panelli, Susan F. Leitman, David F. Stroncek, Francesco M. Marincola

Published in: Cancer Immunology, Immunotherapy | Issue 7/2007

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Abstract

Latent membrane protein (LMP)-2 is one of the Epstein–Barr virus (EBV)-encoded proteins consistently expressed by nasopharyngeal carcinoma (NPC). EBV-transformed lymphoblastoid cell lines (LCL) have been used in patients with NPC to induce LMP-2-recognizing T cell lines which have been in turn utilized for protein-wide mapping of T cell epitopes. However, comprehensive mapping of naturally recognized LMP-2 epitopes in non tumor-bearing individuals has not been reported. Here, we applied a low sensitivity epitope-defining technique for the identification of LMP-2 CTL responses detectable ex vivo in EBV-experienced individuals. This screening tool has been previously validated by analyzing memory CTL responses to Flu, cytomegalovirus (CMV), and the melanoma associated antigen gp100/Mel17. Peripheral blood monocytes (PBMC) from ten Caucasian and ten Chinese individuals were stimulated ex vivo with pools of nonamer (9-mer) peptides overlapping in a stepwise fashion each single amino acid of the LMP-2 sequence. No obvious differences were observed between the immune response of the two ethnic groups save for those related to the divergence in the ethnic prevalence of HLA haplotypes. Several novel and known LMP-2 epitopes were identified. Reactivity toward at least one LMP-2 epitope was detected in 18 of the 20 donors but no prevalent human leukocyte antigen (HLA)/epitope combination was observed confirming that LMP-2 reactivity in the context of common HLA alleles is more pleiotropic than that of FLU and CMV. We believe that the usefulness of these epitopes occurring naturally in non-cancer bearing patients as reagents for the immunization of patients with early or advanced stage NPC deserves further evaluation.
Literature
1.
go back to reference Green M (2001) Management of Epstein–Barr virus-induced post-tranplant lymphoproliferative disease in recipients of solid organ transplantation. Am J Transplant 1:103–108PubMed Green M (2001) Management of Epstein–Barr virus-induced post-tranplant lymphoproliferative disease in recipients of solid organ transplantation. Am J Transplant 1:103–108PubMed
2.
go back to reference Heslop HE, Rooney CM (1997) Adoptive cellular immunotherapy for EBV lymphoproliferative disease. Immunol Rev 157:217–222PubMedCrossRef Heslop HE, Rooney CM (1997) Adoptive cellular immunotherapy for EBV lymphoproliferative disease. Immunol Rev 157:217–222PubMedCrossRef
3.
go back to reference Khanna R, Bell S, Sherritt M, Galbraith A, Burrows SR, Rafter L, Clarke B, Slaughter R, Falk MC, Douglass J, Williams T, Elliott SL, Moss DJ (1999) Activation and adoptive transfer of Epstein–Barr virus-specific cytotoxic T cells in solid organ transplant patients with posttransplant lymphoproliferative disease. Proc Natl Acad Sci USA 96:10391–10396PubMedCrossRef Khanna R, Bell S, Sherritt M, Galbraith A, Burrows SR, Rafter L, Clarke B, Slaughter R, Falk MC, Douglass J, Williams T, Elliott SL, Moss DJ (1999) Activation and adoptive transfer of Epstein–Barr virus-specific cytotoxic T cells in solid organ transplant patients with posttransplant lymphoproliferative disease. Proc Natl Acad Sci USA 96:10391–10396PubMedCrossRef
4.
go back to reference Haque T, Taylor C, Wilkie GM, Murad P, Amlot PL, Beath S, McKiernan PJ, Crawford DH (2001) Complete regression of posttransplant lymphoproliferative disease using partially HLA-matched Epstein–Barr virus-specific cytotoxic T cells. Transplantation 72:1399–1402PubMedCrossRef Haque T, Taylor C, Wilkie GM, Murad P, Amlot PL, Beath S, McKiernan PJ, Crawford DH (2001) Complete regression of posttransplant lymphoproliferative disease using partially HLA-matched Epstein–Barr virus-specific cytotoxic T cells. Transplantation 72:1399–1402PubMedCrossRef
5.
go back to reference Rooney CM, Roskrow MA, Smith CA, Brenner MK, Heslop HE (1998) Immunotherapy of Epstein–Barr virus-associated cancer. J Natl Cancer Inst Monogr 23:89–93PubMed Rooney CM, Roskrow MA, Smith CA, Brenner MK, Heslop HE (1998) Immunotherapy of Epstein–Barr virus-associated cancer. J Natl Cancer Inst Monogr 23:89–93PubMed
6.
go back to reference Gottschalk S, Heslop HE, Rooney CM (2002) Treatment of Epstein–Barr virus-associated malignancies with specific T cells. Adv Cancer Res 84:175–201PubMedCrossRef Gottschalk S, Heslop HE, Rooney CM (2002) Treatment of Epstein–Barr virus-associated malignancies with specific T cells. Adv Cancer Res 84:175–201PubMedCrossRef
7.
go back to reference Chua D, Huang J, Zheng B, Lau SY, Luk W, Kwong DL, Sham JS, Moss D, Yuen KY, Im SW, Ng MH (2001) Adoptive transfer of autologous Epstein–Barr virus-specific cytotoxic T cells for nasopharyngeal carcinoma. Int J Cancer 94:73–80PubMedCrossRef Chua D, Huang J, Zheng B, Lau SY, Luk W, Kwong DL, Sham JS, Moss D, Yuen KY, Im SW, Ng MH (2001) Adoptive transfer of autologous Epstein–Barr virus-specific cytotoxic T cells for nasopharyngeal carcinoma. Int J Cancer 94:73–80PubMedCrossRef
8.
9.
go back to reference McDermott AL, Dutt SN, Watkinson JC (2001) The aetiology of nasopharyngeal carcinoma. Clin Otolaryngol 26:82–92PubMedCrossRef McDermott AL, Dutt SN, Watkinson JC (2001) The aetiology of nasopharyngeal carcinoma. Clin Otolaryngol 26:82–92PubMedCrossRef
10.
11.
go back to reference Mould RF, Tai THP (2002) Nasopharyngeal carcinoma: treatments and outcomes in the 20th century. Br J Radiol 75:307–339PubMed Mould RF, Tai THP (2002) Nasopharyngeal carcinoma: treatments and outcomes in the 20th century. Br J Radiol 75:307–339PubMed
12.
go back to reference Straathof KC, Bollard CM, Popat U, Huls MH, Lopez T, Morriss MC, Gresik MV, Gee AP, Russell HV, Brenner MK, Rooney CM, Heslop HE (2005a) Treatment of nasopharyngeal carcinoma with Epstein–Barr virus-specific T lymphocytes. Blood 105:1898–1904CrossRef Straathof KC, Bollard CM, Popat U, Huls MH, Lopez T, Morriss MC, Gresik MV, Gee AP, Russell HV, Brenner MK, Rooney CM, Heslop HE (2005a) Treatment of nasopharyngeal carcinoma with Epstein–Barr virus-specific T lymphocytes. Blood 105:1898–1904CrossRef
13.
go back to reference Straathof KC, Leen AM, Buza EL, Taylor G, Huls MH, Heslop HE, Rooney CM, Bollard CM (2005b) Characterization of latent membrane protein 2 specificity in CTL lines from patients with EBV-positive nasopharyngeal carcinoma and lymphoma. J Immunol 175:4137–4147 Straathof KC, Leen AM, Buza EL, Taylor G, Huls MH, Heslop HE, Rooney CM, Bollard CM (2005b) Characterization of latent membrane protein 2 specificity in CTL lines from patients with EBV-positive nasopharyngeal carcinoma and lymphoma. J Immunol 175:4137–4147
14.
go back to reference Lin C-L, Lo W-F, Lee T-H, Yi R, Hwang S-L, Cheng Y-F, Chen C-L, Chang Y-S, Lee SP, Rickinson AB, Tam PKH (2002) Immunization with Epstein–Barr virus (EBV) peptide-pulsed dendritic cells induces functional CD8+ T-cell immunity and may lead to tumor regression in patients with EBV-positive nasopharyngeal carcinoma. Cancer Res 62:6952–6958PubMed Lin C-L, Lo W-F, Lee T-H, Yi R, Hwang S-L, Cheng Y-F, Chen C-L, Chang Y-S, Lee SP, Rickinson AB, Tam PKH (2002) Immunization with Epstein–Barr virus (EBV) peptide-pulsed dendritic cells induces functional CD8+ T-cell immunity and may lead to tumor regression in patients with EBV-positive nasopharyngeal carcinoma. Cancer Res 62:6952–6958PubMed
15.
go back to reference Lautscham G, Haigh T, Mayrhofer S, Taylor G, Croom-Carter D, Leese A, Gadola S, Cerundolo V, Rickinson A, Blake N (2003) Identification of a TAP-independent, immunoproteasome-dependent CD8+ T-cell epitope in Esptein–Barr virus latent membrane protein 2. J Virol 77:2757–2761PubMedCrossRef Lautscham G, Haigh T, Mayrhofer S, Taylor G, Croom-Carter D, Leese A, Gadola S, Cerundolo V, Rickinson A, Blake N (2003) Identification of a TAP-independent, immunoproteasome-dependent CD8+ T-cell epitope in Esptein–Barr virus latent membrane protein 2. J Virol 77:2757–2761PubMedCrossRef
16.
go back to reference Sung NS, Edwards RH, Seillier-Moiseiwitsch F, Perkins AG, Zeng Y, Raab-Traub N (1998) Epstein–Barr virus strain variation in nasopharyngeal carcinoma from the endemic and non-endemic regions of China. Int J Cancer 76:207–215PubMedCrossRef Sung NS, Edwards RH, Seillier-Moiseiwitsch F, Perkins AG, Zeng Y, Raab-Traub N (1998) Epstein–Barr virus strain variation in nasopharyngeal carcinoma from the endemic and non-endemic regions of China. Int J Cancer 76:207–215PubMedCrossRef
17.
go back to reference Kammula US, Lee K-H, Riker A, Wang E, Ohnmacht GA, Rosenberg SA, Marincola FM (1999) Functional analysis of antigen-specific T lymphocytes by serial measurement of gene expression in peripheral blood mononuclear cells and tumor specimens. J Immunol 163:6867–6879PubMed Kammula US, Lee K-H, Riker A, Wang E, Ohnmacht GA, Rosenberg SA, Marincola FM (1999) Functional analysis of antigen-specific T lymphocytes by serial measurement of gene expression in peripheral blood mononuclear cells and tumor specimens. J Immunol 163:6867–6879PubMed
18.
go back to reference Kammula US, Marincola FM, Rosenberg SA (2000) Real-time quantitative polymerase chain reaction assessment of immune reactivity in melanoma patients after tumor peptide vaccination. J Natl Cancer Inst 92:1336–1344PubMedCrossRef Kammula US, Marincola FM, Rosenberg SA (2000) Real-time quantitative polymerase chain reaction assessment of immune reactivity in melanoma patients after tumor peptide vaccination. J Natl Cancer Inst 92:1336–1344PubMedCrossRef
19.
go back to reference Provenzano M, Mocellin S, Bettinotti M, Preuss J, Monsurro’ V, Marincola FM, Stroncek D (2002) Identification of immune dominant cytomegalovyrus epitopes using quantitative real-time PCR to measure interferon-γ production by peptide stimulated peripheral blood mononuclear cells. J Immunother 25:342–351PubMedCrossRef Provenzano M, Mocellin S, Bettinotti M, Preuss J, Monsurro’ V, Marincola FM, Stroncek D (2002) Identification of immune dominant cytomegalovyrus epitopes using quantitative real-time PCR to measure interferon-γ production by peptide stimulated peripheral blood mononuclear cells. J Immunother 25:342–351PubMedCrossRef
20.
go back to reference Simons MJ, Day NE, Wee GB, Shanmugaratnam K, Ho HC, Wong SH, Ti TK, Yong NK, Darmalingam S, De-The G (1974) Nasopharyngeal carcinoma V: immunogenetic studies of Southeast Asian ethnic groups with high and low risk for the tumor. Cancer Res 34:1192–1195PubMed Simons MJ, Day NE, Wee GB, Shanmugaratnam K, Ho HC, Wong SH, Ti TK, Yong NK, Darmalingam S, De-The G (1974) Nasopharyngeal carcinoma V: immunogenetic studies of Southeast Asian ethnic groups with high and low risk for the tumor. Cancer Res 34:1192–1195PubMed
21.
go back to reference Jing J, Louie E, Henderson BE, Terasaki IP (1977) Histocompatibility leukocyte antigen patterns in nasopharyngeal carcinoma cases from California. Natl.Cancer Inst.Monogr 47:156 Jing J, Louie E, Henderson BE, Terasaki IP (1977) Histocompatibility leukocyte antigen patterns in nasopharyngeal carcinoma cases from California. Natl.Cancer Inst.Monogr 47:156
22.
go back to reference Cui SH, Lin Y (1982) Apparent correlation between nasopharyngeal carcinoma and HLA phenotype. Zhonghua Zhong Liu Za Zhi 4:249–253PubMed Cui SH, Lin Y (1982) Apparent correlation between nasopharyngeal carcinoma and HLA phenotype. Zhonghua Zhong Liu Za Zhi 4:249–253PubMed
23.
go back to reference Chan SH, Day NE, Kunaratnam N, Chia KB, Simons MJ (1983) HLA and nasopharyngeal carcinoma in Chinese—a further study. Int J Cancer 32:171–176PubMedCrossRef Chan SH, Day NE, Kunaratnam N, Chia KB, Simons MJ (1983) HLA and nasopharyngeal carcinoma in Chinese—a further study. Int J Cancer 32:171–176PubMedCrossRef
24.
go back to reference Ou B-X, Ruan H-Y, Fan Y (1985) Study on association between HLA-A, B, C DR, nasopharyngeal carcinoma in Guangzhou area. Ai Zheng 4:5–8 Ou B-X, Ruan H-Y, Fan Y (1985) Study on association between HLA-A, B, C DR, nasopharyngeal carcinoma in Guangzhou area. Ai Zheng 4:5–8
25.
go back to reference Zhang JZ (1986) Correlation between nasopharyngeal carcinoma (NPC) and HLA in Hunan Province. Zhonghua Zhong Liu Za Zhi 8:170–172PubMed Zhang JZ (1986) Correlation between nasopharyngeal carcinoma (NPC) and HLA in Hunan Province. Zhonghua Zhong Liu Za Zhi 8:170–172PubMed
26.
go back to reference Hildesheim A, Apple RJ, Chen C-J, Wang SS, Cheng Y-J, Klitz W, Mack SJ, Chen I-H, Hsu M-M, Yang C-S, Brinton LA, Levine PH, Erlich HA (2002) Association of HLA class I and II alleles and extended haplotypes with nasopharyngeal carcinoma in Taiwan. J Natl Cancer Inst 94:1780–1789PubMed Hildesheim A, Apple RJ, Chen C-J, Wang SS, Cheng Y-J, Klitz W, Mack SJ, Chen I-H, Hsu M-M, Yang C-S, Brinton LA, Levine PH, Erlich HA (2002) Association of HLA class I and II alleles and extended haplotypes with nasopharyngeal carcinoma in Taiwan. J Natl Cancer Inst 94:1780–1789PubMed
27.
go back to reference Pimtanothai N, Charoenwongse P, Mutirangura A, Hurley CK (2002) Distribution of HLA-B alleles in nasopharyngeal carcinoma patients and normal controls in Thailand. Tissue Antigens 59:223–225PubMedCrossRef Pimtanothai N, Charoenwongse P, Mutirangura A, Hurley CK (2002) Distribution of HLA-B alleles in nasopharyngeal carcinoma patients and normal controls in Thailand. Tissue Antigens 59:223–225PubMedCrossRef
28.
go back to reference Lu C-C, Chen J-C, Jin Y-T, Yang H-B, Chan S-H, Tsai S-T (2003) Genetic susceptibility to nasopharyngeal carcinoma within the HLA-A locus in Taiwanese. Int J Cancer 103:745–751PubMedCrossRef Lu C-C, Chen J-C, Jin Y-T, Yang H-B, Chan S-H, Tsai S-T (2003) Genetic susceptibility to nasopharyngeal carcinoma within the HLA-A locus in Taiwanese. Int J Cancer 103:745–751PubMedCrossRef
29.
go back to reference Hu SP, Day NE, Li DR, Luben RN, Cai KL, Ou-Yang T, Li B, Lu XZ, Ponder BA (2005) Further evidence for an HLA-related recessive mutation in nasopharyngeal carcinoma among the Chinese. Br J Cancer 92:967–970PubMedCrossRef Hu SP, Day NE, Li DR, Luben RN, Cai KL, Ou-Yang T, Li B, Lu XZ, Ponder BA (2005) Further evidence for an HLA-related recessive mutation in nasopharyngeal carcinoma among the Chinese. Br J Cancer 92:967–970PubMedCrossRef
30.
go back to reference Goldsmith DB, West TM, Morton R (2002) HLA associations with nasopharyngeal carconoma in Southern Chinese: a meta-analysis. Clin Otolaryngol 27:61–67PubMedCrossRef Goldsmith DB, West TM, Morton R (2002) HLA associations with nasopharyngeal carconoma in Southern Chinese: a meta-analysis. Clin Otolaryngol 27:61–67PubMedCrossRef
31.
go back to reference Krausa P, Browning MJ (1996) A comprehensive PCR-SSP typing system for identification of HLA-A locus alleles. Tissue Antigens 47:237–244PubMed Krausa P, Browning MJ (1996) A comprehensive PCR-SSP typing system for identification of HLA-A locus alleles. Tissue Antigens 47:237–244PubMed
32.
go back to reference Browning M, Krausa P (1996) Genetic diversity of HLA-A2: evolutionary and functional significance. Immunol.Today 17:165–170PubMedCrossRef Browning M, Krausa P (1996) Genetic diversity of HLA-A2: evolutionary and functional significance. Immunol.Today 17:165–170PubMedCrossRef
33.
go back to reference Simonis TB, Barracchini KC, Hackett JA, Maurer D, Siauw P, Tonai R, Marincola FM (1997) HLA-A*02 allele frequencies of different ethnic groups. Hum Immunol 55:99 Simonis TB, Barracchini KC, Hackett JA, Maurer D, Siauw P, Tonai R, Marincola FM (1997) HLA-A*02 allele frequencies of different ethnic groups. Hum Immunol 55:99
34.
go back to reference Krausa P, Brywka M, Savage D, Hui KM, Bunce M, Ngai JL, Teo DL, Ong YW, Barouch D, Allsop CE, et al (1995) Genetic polymorphism within HLA-A*02: significant allelic variation revealed in different populations. Tissue Antigens 45:223–231PubMedCrossRef Krausa P, Brywka M, Savage D, Hui KM, Bunce M, Ngai JL, Teo DL, Ong YW, Barouch D, Allsop CE, et al (1995) Genetic polymorphism within HLA-A*02: significant allelic variation revealed in different populations. Tissue Antigens 45:223–231PubMedCrossRef
35.
go back to reference Chang YW, Hawkins BR (1997) HLA class I and class II frequencies of a Hong Kong Chinese population based on bone marrow donor registry data. Human Immunol 56:125–135CrossRef Chang YW, Hawkins BR (1997) HLA class I and class II frequencies of a Hong Kong Chinese population based on bone marrow donor registry data. Human Immunol 56:125–135CrossRef
36.
go back to reference Adams SD, Barracchini KC, Chen D, Robbins F, Wang L, Larsen P, Luhm R, Stroncek DF (2004) Ambiguous allele combinations in HLA Class I and Class II sequence-based typing: when precise nucleotide sequencing leads to imprecise allele identification. J Transl Med 2:30PubMedCrossRef Adams SD, Barracchini KC, Chen D, Robbins F, Wang L, Larsen P, Luhm R, Stroncek DF (2004) Ambiguous allele combinations in HLA Class I and Class II sequence-based typing: when precise nucleotide sequencing leads to imprecise allele identification. J Transl Med 2:30PubMedCrossRef
37.
go back to reference Adams SD, Barracchini KC, Simonis TB, Stroncek D, Marincola FM (2001) High throughput HLA sequence-based typing utilizing the ABI prism 3700 analyzer. Tumori 87:s41–s44 Adams SD, Barracchini KC, Simonis TB, Stroncek D, Marincola FM (2001) High throughput HLA sequence-based typing utilizing the ABI prism 3700 analyzer. Tumori 87:s41–s44
38.
go back to reference McGinnis M, Stein JB, Adams SD, Marincola FM, Krausa P (2001) Implementing high throughput HLA SBT on a 96-capillary DNA sequencer. Hum Immunol s146:7.4 McGinnis M, Stein JB, Adams SD, Marincola FM, Krausa P (2001) Implementing high throughput HLA SBT on a 96-capillary DNA sequencer. Hum Immunol s146:7.4
39.
go back to reference Keilholz U, Weber J, Finke J, Gabrilovich D, Kast WM, Disis N, Kirkwood J, Scheibenbogen C, Schlom J, Maino V, Lyerly K, Lee PJ, Storkus WJ, Marincola FM, Worobec A, Atkins M (2002) Immunologic monitoring of cancer vaccine therapy: results of a workshop sponsored by the Society of Biological Therapy. J Immunother 25:97–138PubMedCrossRef Keilholz U, Weber J, Finke J, Gabrilovich D, Kast WM, Disis N, Kirkwood J, Scheibenbogen C, Schlom J, Maino V, Lyerly K, Lee PJ, Storkus WJ, Marincola FM, Worobec A, Atkins M (2002) Immunologic monitoring of cancer vaccine therapy: results of a workshop sponsored by the Society of Biological Therapy. J Immunother 25:97–138PubMedCrossRef
40.
go back to reference Panelli MC, Wang E, Monsurro’ V, Marincola FM (2002) The role of quantitative PCR for the immune monitoring of cancer patients. Exp Opin Biol Ther 2:557–564CrossRef Panelli MC, Wang E, Monsurro’ V, Marincola FM (2002) The role of quantitative PCR for the immune monitoring of cancer patients. Exp Opin Biol Ther 2:557–564CrossRef
41.
go back to reference Mocellin S, Rossi CR, Pilati P, Nitti D, Marincola FM (2003) Quantitative real-time PCR: a powerful ally in cancer research. Trends Mol Med 9:189–195PubMedCrossRef Mocellin S, Rossi CR, Pilati P, Nitti D, Marincola FM (2003) Quantitative real-time PCR: a powerful ally in cancer research. Trends Mol Med 9:189–195PubMedCrossRef
42.
go back to reference Ghei M, Stroncek DF, Provenzano M (2005) Analysis of memory T lymphocyte activity following stimulation with overlapping HLA-A*2402, A*0101 and Cw*0402 restricted CMV pp65 peptides. J Transl Med 3:23PubMedCrossRef Ghei M, Stroncek DF, Provenzano M (2005) Analysis of memory T lymphocyte activity following stimulation with overlapping HLA-A*2402, A*0101 and Cw*0402 restricted CMV pp65 peptides. J Transl Med 3:23PubMedCrossRef
43.
go back to reference Provenzano M, Mocellin S, Bonginelli P, Nagorsen D, Kwon SW, Stroncek D Ex vivo screening for immunodominant viral epitopes by quantitative real time polymerase chain reaction (qRT-PCR). J Transl Med 1:11, 3 A.D Provenzano M, Mocellin S, Bonginelli P, Nagorsen D, Kwon SW, Stroncek D Ex vivo screening for immunodominant viral epitopes by quantitative real time polymerase chain reaction (qRT-PCR). J Transl Med 1:11, 3 A.D
44.
go back to reference Trojan A, Urosevic M, Hummerjohann J, Giger R, Schanz U, Stahel RA (2003) Immune reactivity against a novel HLA-A3-restricted influenza virus peptide identified by predictive algorithms and interferon-gamma quantitative PCR. J Immunother 26:41–46PubMedCrossRef Trojan A, Urosevic M, Hummerjohann J, Giger R, Schanz U, Stahel RA (2003) Immune reactivity against a novel HLA-A3-restricted influenza virus peptide identified by predictive algorithms and interferon-gamma quantitative PCR. J Immunother 26:41–46PubMedCrossRef
45.
go back to reference Busson P, McCoy R, Sadler R, Gilligan K, Tursz T, Raab-Traub N (1992) Consistent transcription of the Epstein–Barr virus LMP2 gene in nasopharyngeal carcinoma. J Virol 66:3257–3262PubMed Busson P, McCoy R, Sadler R, Gilligan K, Tursz T, Raab-Traub N (1992) Consistent transcription of the Epstein–Barr virus LMP2 gene in nasopharyngeal carcinoma. J Virol 66:3257–3262PubMed
46.
go back to reference Bettinotti M, Kim CJ, Lee K-H, Roden M, Cormier JN, Panelli MC, Parker KC, Marincola FM (1998) Stringent allele/epitope requirements for MART-1/Melan A immunodominance: implications for peptide-based immunotherapy. J Immunol 161:877–889PubMed Bettinotti M, Kim CJ, Lee K-H, Roden M, Cormier JN, Panelli MC, Parker KC, Marincola FM (1998) Stringent allele/epitope requirements for MART-1/Melan A immunodominance: implications for peptide-based immunotherapy. J Immunol 161:877–889PubMed
47.
go back to reference Lee SP, Thomas WA, Murray RJ, Khanim F, Kaur S, Young LS, Rowe M, Kurilla M, Rickinson AB (1993) HLA A2.1-restricted cytotoxic T cells recognizing a range of Epstein–Barr virus isolates through a defined epitope in latent membrane protein LMP 2. J Virol 67:7428–7435PubMed Lee SP, Thomas WA, Murray RJ, Khanim F, Kaur S, Young LS, Rowe M, Kurilla M, Rickinson AB (1993) HLA A2.1-restricted cytotoxic T cells recognizing a range of Epstein–Barr virus isolates through a defined epitope in latent membrane protein LMP 2. J Virol 67:7428–7435PubMed
48.
go back to reference Adams S, Robbins FM, Chen D, Wagage D, Holbeck SL, Morse HC III, Stroncek D, Marincola FM (2005) HLA class I and II genotype of the NCI-60 cell lines. J Transl Med 3:11PubMedCrossRef Adams S, Robbins FM, Chen D, Wagage D, Holbeck SL, Morse HC III, Stroncek D, Marincola FM (2005) HLA class I and II genotype of the NCI-60 cell lines. J Transl Med 3:11PubMedCrossRef
49.
go back to reference Livak KJ, Schmittgen TD (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 25:402–408PubMedCrossRef Livak KJ, Schmittgen TD (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 25:402–408PubMedCrossRef
50.
go back to reference Nielsen M-B, Monsurro’ V, Miguelse S, Wang E, Perez-Diez A, Lee K-H, Kammula US Rosenberg SA, Marincola FM (2000) Status of activation of circulating vaccine-elicited CD8+ T cells. J Immunol 165:2287–2296PubMed Nielsen M-B, Monsurro’ V, Miguelse S, Wang E, Perez-Diez A, Lee K-H, Kammula US Rosenberg SA, Marincola FM (2000) Status of activation of circulating vaccine-elicited CD8+ T cells. J Immunol 165:2287–2296PubMed
51.
go back to reference Rivoltini L, Loftus DJ, Barracchini K, Arienti F, Mazzocchi A, Biddison WE, Salgaller ML, Appella E, Parmiani G, Marincola FM (1996) Binding and presentation of peptides derived from melanoma antigens MART-1 and gp100 by HLA-A2 subtypes: implications for peptide-based immunotherapy. J Immunol 156:3882–3891PubMed Rivoltini L, Loftus DJ, Barracchini K, Arienti F, Mazzocchi A, Biddison WE, Salgaller ML, Appella E, Parmiani G, Marincola FM (1996) Binding and presentation of peptides derived from melanoma antigens MART-1 and gp100 by HLA-A2 subtypes: implications for peptide-based immunotherapy. J Immunol 156:3882–3891PubMed
52.
go back to reference Provenzano M, Panelli MC, Mocellin S, Bracci L, Sais G, Stroncek DF, Spagnoli GC, Marincola FM (2006) MHC-peptide specificity and T-cell epitope mapping: where immunotherapy starts. Trends Mol Med Provenzano M, Panelli MC, Mocellin S, Bracci L, Sais G, Stroncek DF, Spagnoli GC, Marincola FM (2006) MHC-peptide specificity and T-cell epitope mapping: where immunotherapy starts. Trends Mol Med
53.
go back to reference Eisen MB, Spellman PT, Brown PO, Botstein D (1998) Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci U S A 95:14863–14868PubMedCrossRef Eisen MB, Spellman PT, Brown PO, Botstein D (1998) Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci U S A 95:14863–14868PubMedCrossRef
54.
go back to reference Threlkeld SC, Wentworth PA, Kalams SA, Wilkes BM, Ruhl DJ, Keogh E, Sidney J, Southwood S, Walker BD, Sette A (1997) Degenerate and promiscuous recognition by CTL of peptides presented by the MHC class I A3-like superfamily: implications for vaccine development. J Immunol 159:1648–1657PubMed Threlkeld SC, Wentworth PA, Kalams SA, Wilkes BM, Ruhl DJ, Keogh E, Sidney J, Southwood S, Walker BD, Sette A (1997) Degenerate and promiscuous recognition by CTL of peptides presented by the MHC class I A3-like superfamily: implications for vaccine development. J Immunol 159:1648–1657PubMed
55.
go back to reference Gordon S (2003) Alternative activation of macrophages. Nature Rev 3:23–35CrossRef Gordon S (2003) Alternative activation of macrophages. Nature Rev 3:23–35CrossRef
56.
go back to reference Khanna R, Burrows SR, Thomson SA, Moss DJ, Cresswell P, Poulsen LM, Cooper L (1997) Class I processing-defective Burkitt’s lymphoma cells are recognized efficiently by CD4+ EBV-specific CTLs. J Immunol 158:3619–3625PubMed Khanna R, Burrows SR, Thomson SA, Moss DJ, Cresswell P, Poulsen LM, Cooper L (1997) Class I processing-defective Burkitt’s lymphoma cells are recognized efficiently by CD4+ EBV-specific CTLs. J Immunol 158:3619–3625PubMed
57.
go back to reference Lee SP, Tierney RJ, Thomas WA, Brooks JM, Rickinson AB (1997) Conserved CTL epitopes within EBV latent membrane protein 2. A potential target for CTL-based tumor therapy. J Immunol 158:3325–3334PubMed Lee SP, Tierney RJ, Thomas WA, Brooks JM, Rickinson AB (1997) Conserved CTL epitopes within EBV latent membrane protein 2. A potential target for CTL-based tumor therapy. J Immunol 158:3325–3334PubMed
58.
go back to reference Meij P, Leen A, Rickinson AB, Varkoeijen S, Vervoort MBHJ, Bloemena E, Middeldorp JM (2002) Identification and prevalence of CD8+ T-cell responses directed against Epstein–Barr virus-encoded latent membrane protein 1 and latent membrane protein 2. Int J Cancer 99:93–99PubMedCrossRef Meij P, Leen A, Rickinson AB, Varkoeijen S, Vervoort MBHJ, Bloemena E, Middeldorp JM (2002) Identification and prevalence of CD8+ T-cell responses directed against Epstein–Barr virus-encoded latent membrane protein 1 and latent membrane protein 2. Int J Cancer 99:93–99PubMedCrossRef
59.
go back to reference Whitney BM, Chan A. T. C, Rickinson AB, Lee SP, Lin CK, Johnson PJ (2002) Frequency of Epstein–Barr virus-specific cytotoxic T lymphocytes in the blood of Southern Chinese blood donors and nasopharyngeal carcinoma patients. J Med Virol 67:359–363PubMedCrossRef Whitney BM, Chan A. T. C, Rickinson AB, Lee SP, Lin CK, Johnson PJ (2002) Frequency of Epstein–Barr virus-specific cytotoxic T lymphocytes in the blood of Southern Chinese blood donors and nasopharyngeal carcinoma patients. J Med Virol 67:359–363PubMedCrossRef
60.
go back to reference Parker KC, Bednarek MA, Coligan JE (1994) Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains. J Immunol 152:163–175PubMed Parker KC, Bednarek MA, Coligan JE (1994) Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains. J Immunol 152:163–175PubMed
61.
go back to reference Rammensee H, Bachmann J, Emmerich NP, Bachor OA, Stevanovic S (1999) SYFPEITHI: database for MHC ligands and peptide motifs. Immunogenetics 50:213–219PubMedCrossRef Rammensee H, Bachmann J, Emmerich NP, Bachor OA, Stevanovic S (1999) SYFPEITHI: database for MHC ligands and peptide motifs. Immunogenetics 50:213–219PubMedCrossRef
62.
go back to reference del Guercio MF, Sidney J, Hermanson G, Perez C, Grey HM, Kubo RT, Sette A (1995) Binding of a peptide antigen to multiple HLA alleles allows definition of an A2-like supertype. J Immunol 154:685–693PubMed del Guercio MF, Sidney J, Hermanson G, Perez C, Grey HM, Kubo RT, Sette A (1995) Binding of a peptide antigen to multiple HLA alleles allows definition of an A2-like supertype. J Immunol 154:685–693PubMed
63.
go back to reference Kan-Mitchell J, Bajcz M, Schaubert KL, Price DA, Brenchley JM, Asher TE, Douek DC, Ng HL, Yang OO, Rinaldo CR Jr, Benito JM, Bisikirska B, Hegde R, Marincola FM, Boggiano C, Wilson D, Abrams J, Blondelle SE, Wilson DB (2006) Degeneracy and repertoire of the human HIV-1 Gag p1777–85 CTL response. J Immunol 176:6690–6701PubMed Kan-Mitchell J, Bajcz M, Schaubert KL, Price DA, Brenchley JM, Asher TE, Douek DC, Ng HL, Yang OO, Rinaldo CR Jr, Benito JM, Bisikirska B, Hegde R, Marincola FM, Boggiano C, Wilson D, Abrams J, Blondelle SE, Wilson DB (2006) Degeneracy and repertoire of the human HIV-1 Gag p1777–85 CTL response. J Immunol 176:6690–6701PubMed
64.
go back to reference Sidney J, Grey HM, Southwood S, Celis E, Wentworth PA, del Guercio MF, Kubo RT, Chesnut RW, Sette A (1996) Definition of an HLA-A3-like supermotif demonstrates the overlapping peptide-binding repertoires of common HLA molecules. Hum.Immunol 45:79–93PubMedCrossRef Sidney J, Grey HM, Southwood S, Celis E, Wentworth PA, del Guercio MF, Kubo RT, Chesnut RW, Sette A (1996) Definition of an HLA-A3-like supermotif demonstrates the overlapping peptide-binding repertoires of common HLA molecules. Hum.Immunol 45:79–93PubMedCrossRef
65.
go back to reference DiBrino M, Parker KC, Shiloach J, Turner RV, Tsuchida T, Garfield M, Biddison WE, Coligan JE (1994) Endogenous peptides with distinct amino acid anchor residue motifs bind to HLA-A1 and HLA-B8. J.Immunol 152:620–631PubMed DiBrino M, Parker KC, Shiloach J, Turner RV, Tsuchida T, Garfield M, Biddison WE, Coligan JE (1994) Endogenous peptides with distinct amino acid anchor residue motifs bind to HLA-A1 and HLA-B8. J.Immunol 152:620–631PubMed
66.
go back to reference Parker KC, Bednarek MA, Hull LK, Utz U, Cunningham B, Zweerink HJ, Biddison WE, Coligan JE (1992) Sequence motifs important for peptide binding to the human MHC class I molecule, HLA-A2. J Immunol 149:3580–3587PubMed Parker KC, Bednarek MA, Hull LK, Utz U, Cunningham B, Zweerink HJ, Biddison WE, Coligan JE (1992) Sequence motifs important for peptide binding to the human MHC class I molecule, HLA-A2. J Immunol 149:3580–3587PubMed
67.
go back to reference Sauma SY, Gammon MC, Bednarek MA, Cunningham B, Biddison WE, Hermes JD, Porter G, Tamhankar S, Hawkins JC, Bush BL, et al (1993) Recognition by HLA-A2-restricted cytotoxic T lymphocytes of endogenously generated and exogenously provided synthetic peptide analogues of the influenza A virus matrix protein. Hum Immunol 37:252–258PubMedCrossRef Sauma SY, Gammon MC, Bednarek MA, Cunningham B, Biddison WE, Hermes JD, Porter G, Tamhankar S, Hawkins JC, Bush BL, et al (1993) Recognition by HLA-A2-restricted cytotoxic T lymphocytes of endogenously generated and exogenously provided synthetic peptide analogues of the influenza A virus matrix protein. Hum Immunol 37:252–258PubMedCrossRef
68.
go back to reference Utz U, Koenig S, Coligan JE, Biddison WE (1992) Presentation of three different viral peptides, HTLV-1 Tax, HCMV gB, and influenza virus M1, is determined by common structural features of the HLA-A2.1 molecule. J Immunol 149:214–221PubMed Utz U, Koenig S, Coligan JE, Biddison WE (1992) Presentation of three different viral peptides, HTLV-1 Tax, HCMV gB, and influenza virus M1, is determined by common structural features of the HLA-A2.1 molecule. J Immunol 149:214–221PubMed
69.
go back to reference Marincola FM, Rivoltini L, Salgaller ML, Player M, Rosenberg SA (1996) Differential anti-MART-1/MelanA CTL activity in peripheral blood of HLA-A2 melanoma patients in comparison to healthy donors: evidence for in vivo priming by tumor cells. J Immunother 19:266–277CrossRef Marincola FM, Rivoltini L, Salgaller ML, Player M, Rosenberg SA (1996) Differential anti-MART-1/MelanA CTL activity in peripheral blood of HLA-A2 melanoma patients in comparison to healthy donors: evidence for in vivo priming by tumor cells. J Immunother 19:266–277CrossRef
70.
go back to reference Marincola FM, Stroncek D, Simonis T (1998) Population studies. Caucasian US melanoma cancer. In: Terasaki IP, Gjertson DW (eds) HLA 1998, 2nd edn. American Society for histocompatibility and immunogenetics. Lanexa, Kansas pp 276–277 Marincola FM, Stroncek D, Simonis T (1998) Population studies. Caucasian US melanoma cancer. In: Terasaki IP, Gjertson DW (eds) HLA 1998, 2nd edn. American Society for histocompatibility and immunogenetics. Lanexa, Kansas pp 276–277
71.
go back to reference Zhang XS, Wang HH, Hu LF, Li A, Zhang RH, Mai HQ, Xia JC, Chen LZ, Zeng YX (2004) V-val subtype of Epstein–Barr virus nuclear antigen 1 preferentially exists in biopsies of nasopharyngeal carcinoma. Cancer Lett 211:11–18PubMedCrossRef Zhang XS, Wang HH, Hu LF, Li A, Zhang RH, Mai HQ, Xia JC, Chen LZ, Zeng YX (2004) V-val subtype of Epstein–Barr virus nuclear antigen 1 preferentially exists in biopsies of nasopharyngeal carcinoma. Cancer Lett 211:11–18PubMedCrossRef
72.
go back to reference Zeng M-S, Li D-J, Liu Q-L, Song L-B, Li M-Z, Zhang R-H, Yu X-J, Wang H-M, Ernberg I, Zeng YX (2005) Genomic sequence analysis of an Epstein–Barr virus strain DG1 from a nasopharyngeal carcinoma patient. J Virol (in press) Zeng M-S, Li D-J, Liu Q-L, Song L-B, Li M-Z, Zhang R-H, Yu X-J, Wang H-M, Ernberg I, Zeng YX (2005) Genomic sequence analysis of an Epstein–Barr virus strain DG1 from a nasopharyngeal carcinoma patient. J Virol (in press)
73.
go back to reference Bjorkman PJ, Saper MA, Samraoui B, Bennett WS, Strominger JL, Wiley DC (1987) Structure of the human class I histocompatibility antigen, HLA-A2. Nature 329:506–512PubMedCrossRef Bjorkman PJ, Saper MA, Samraoui B, Bennett WS, Strominger JL, Wiley DC (1987) Structure of the human class I histocompatibility antigen, HLA-A2. Nature 329:506–512PubMedCrossRef
74.
go back to reference Bjorkman PJ, Parham P (1990) Structure, function, and diversity of class I major histocompatibility complex molecules. Annu Rev Biochem 59:253–288PubMedCrossRef Bjorkman PJ, Parham P (1990) Structure, function, and diversity of class I major histocompatibility complex molecules. Annu Rev Biochem 59:253–288PubMedCrossRef
75.
go back to reference Altuvia Y, Sette A, Sidney J, Southwood S, Margalit HA (1997) Structure-based algorithm to predict potential binding peptides to MHC molecules with hydrophobic binding pockets. Hum Immunol 58:1–11PubMedCrossRef Altuvia Y, Sette A, Sidney J, Southwood S, Margalit HA (1997) Structure-based algorithm to predict potential binding peptides to MHC molecules with hydrophobic binding pockets. Hum Immunol 58:1–11PubMedCrossRef
76.
go back to reference Meng WS, von Grafenstein H, Haworth IS (2000) Water dynamics at the binding interface of four different HLA-A2-peptide complexes. Int Immunol 12:949–957PubMedCrossRef Meng WS, von Grafenstein H, Haworth IS (2000) Water dynamics at the binding interface of four different HLA-A2-peptide complexes. Int Immunol 12:949–957PubMedCrossRef
77.
go back to reference Desmet J, Meersseman G, Boutonnet N, Pletinckx J, De Clercq K, Debulpaep M, Braeckman T, Lasters I (2005) Anchor profiles of HLA-specific peptides: analysis by a novel affinity scoring method and experimental validation. Proteins 58:53–69PubMedCrossRef Desmet J, Meersseman G, Boutonnet N, Pletinckx J, De Clercq K, Debulpaep M, Braeckman T, Lasters I (2005) Anchor profiles of HLA-specific peptides: analysis by a novel affinity scoring method and experimental validation. Proteins 58:53–69PubMedCrossRef
78.
go back to reference Simons MJ (2003) HLA and nasopharyngeal carcinoma:30 years on. ASHI Q 27:52–55 Simons MJ (2003) HLA and nasopharyngeal carcinoma:30 years on. ASHI Q 27:52–55
79.
go back to reference Pallesen G, Hamilton-Dutoit SJ, Rowe M, Young SL (1991) Expression of Epstein–Barr virus latent gene products in tumour cells of Hodgkin’s disease. Lancet 337:320–322PubMedCrossRef Pallesen G, Hamilton-Dutoit SJ, Rowe M, Young SL (1991) Expression of Epstein–Barr virus latent gene products in tumour cells of Hodgkin’s disease. Lancet 337:320–322PubMedCrossRef
80.
go back to reference Niedobitek G, Kremmer E, Herbst H, Whitehead L, Dawson CW, Niedobitek E, von Ostau C, Rooney N, Grasser FA, Young LS (1997) Immunohistochemical detection of the Epstein–Barr virus-encoded latent membrane protein 2A in Hodgkin’s disease and infectious mononuclosis. Blood 90:1664–1672PubMed Niedobitek G, Kremmer E, Herbst H, Whitehead L, Dawson CW, Niedobitek E, von Ostau C, Rooney N, Grasser FA, Young LS (1997) Immunohistochemical detection of the Epstein–Barr virus-encoded latent membrane protein 2A in Hodgkin’s disease and infectious mononuclosis. Blood 90:1664–1672PubMed
81.
go back to reference Berger C, Rothenberger S, Bachmann E, McQuain C, Nadal D, Kneth H (1999) Sequence polymorphisms between latent membrane proteins LMP1 and LMP2A do not correlate in EBV-associated reactive and malignant lympho-proliferations. Int J Cancer 81:371–375PubMedCrossRef Berger C, Rothenberger S, Bachmann E, McQuain C, Nadal D, Kneth H (1999) Sequence polymorphisms between latent membrane proteins LMP1 and LMP2A do not correlate in EBV-associated reactive and malignant lympho-proliferations. Int J Cancer 81:371–375PubMedCrossRef
82.
go back to reference D’Souza S, Rimoldi D, Lienard D, Lejeune F, Cerottini JC, Romero P (1998) Circulating Melan-A/Mart-1 specific cytolytic T lymphocyte precursors in HLA-A2+ melanoma patients have a memory phenotype. Int J Cancer 78:699–706PubMedCrossRef D’Souza S, Rimoldi D, Lienard D, Lejeune F, Cerottini JC, Romero P (1998) Circulating Melan-A/Mart-1 specific cytolytic T lymphocyte precursors in HLA-A2+ melanoma patients have a memory phenotype. Int J Cancer 78:699–706PubMedCrossRef
83.
go back to reference Ross DT, Scherf U, Eisen MB, Perou CM, Rees CA, Spellman PT, Iyer V, Jeffrey SS, van de Rijn M, Waltham M, Pergamenschikov A, Lee JC, Lashkari D, Shalon D, Myers TG, Weinstein JN, Botstein D, Brown PO (2000) Systematic variation in gene expression patterns in human cancer cell lines. Nat Genet 24:227–235PubMedCrossRef Ross DT, Scherf U, Eisen MB, Perou CM, Rees CA, Spellman PT, Iyer V, Jeffrey SS, van de Rijn M, Waltham M, Pergamenschikov A, Lee JC, Lashkari D, Shalon D, Myers TG, Weinstein JN, Botstein D, Brown PO (2000) Systematic variation in gene expression patterns in human cancer cell lines. Nat Genet 24:227–235PubMedCrossRef
Metadata
Title
Comprehensive epitope mapping of the Epstein–Barr virus latent membrane protein-2 in normal, non tumor-bearing individuals
Authors
Maurizio Provenzano
Silvia Selleri
Ping Jin
Ena Wang
Rosemary Werden
Stephanie Slezak
Sharon D. Adams
Monica C. Panelli
Susan F. Leitman
David F. Stroncek
Francesco M. Marincola
Publication date
01-07-2007
Publisher
Springer-Verlag
Published in
Cancer Immunology, Immunotherapy / Issue 7/2007
Print ISSN: 0340-7004
Electronic ISSN: 1432-0851
DOI
https://doi.org/10.1007/s00262-006-0246-3

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