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Published in: Cellular Oncology 1/2012

Open Access 01-02-2012 | Original Paper

Colorectal adenoma to carcinoma progression is accompanied by changes in gene expression associated with ageing, chromosomal instability, and fatty acid metabolism

Authors: Beatriz Carvalho, Anke H. Sillars-Hardebol, Cindy Postma, Sandra Mongera, Jochim Terhaar Sive Droste, Askar Obulkasim, Mark van de Wiel, Wim van Criekinge, Bauke Ylstra, Remond J. A. Fijneman, Gerrit A. Meijer

Published in: Cellular Oncology | Issue 1/2012

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Abstract

Background

Colorectal cancer develops in a multi-step manner from normal epithelium, through a pre-malignant lesion (so-called adenoma), into a malignant lesion (carcinoma), which invades surrounding tissues and eventually can spread systemically (metastasis). It is estimated that only about 5% of adenomas do progress to a carcinoma.

Aim

The present study aimed to unravel the biology of adenoma to carcinoma progression by mRNA expression profiling, and to identify candidate biomarkers for adenomas that are truly at high risk of progression.

Methods

Genome-wide mRNA expression profiles were obtained from a series of 37 colorectal adenomas and 31 colorectal carcinomas using oligonucleotide microarrays. Differentially expressed genes were validated in an independent colorectal gene expression data set. Gene Set Enrichment Analysis (GSEA) was used to identify altered expression of sets of genes associated with specific biological processes, in order to better understand the biology of colorectal adenoma to carcinoma progression.

Results

mRNA expression of 248 genes was significantly different, of which 96 were upregulated and 152 downregulated in carcinomas compared to adenomas. Classification of adenomas and carcinomas using the expression of these genes showed to be very accurate, also when tested in an independent expression data set. Gene-sets associated with ageing (which is related to senescence) and chromosomal instability were upregulated, and a gene-set associated with fatty acid metabolism was downregulated in carcinomas compared to adenomas. Moreover, gene-sets associated with chromosomal location revealed chromosome 4q22 loss and chromosome 20q gain of gene-set expression as being relevant in this progression.

Concluding remark

These data are consistent with the notion that adenomas and carcinomas are distinct biological entities. Disruption of specific biological processes like senescence (ageing), maintenance of chromosomal instability and altered metabolism, are key factors in the progression from adenoma to carcinoma.
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Metadata
Title
Colorectal adenoma to carcinoma progression is accompanied by changes in gene expression associated with ageing, chromosomal instability, and fatty acid metabolism
Authors
Beatriz Carvalho
Anke H. Sillars-Hardebol
Cindy Postma
Sandra Mongera
Jochim Terhaar Sive Droste
Askar Obulkasim
Mark van de Wiel
Wim van Criekinge
Bauke Ylstra
Remond J. A. Fijneman
Gerrit A. Meijer
Publication date
01-02-2012
Publisher
Springer Netherlands
Published in
Cellular Oncology / Issue 1/2012
Print ISSN: 2211-3428
Electronic ISSN: 2211-3436
DOI
https://doi.org/10.1007/s13402-011-0065-1

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