Skip to main content
Top
Published in: Annals of Surgical Oncology 1/2013

01-01-2013 | Colorectal Cancer

Clinical Decision Support and Individualized Prediction of Survival in Colon Cancer: Bayesian Belief Network Model

Authors: Alexander Stojadinovic, MD, Anton Bilchik, MD, PhD, David Smith, PhD, John S. Eberhardt, BA, Elizabeth Ben Ward, MS, Aviram Nissan, MD, Eric K. Johnson, MD, Mladjan Protic, MD, George E. Peoples, MD, Itzhak Avital, MD, Scott R. Steele, MD

Published in: Annals of Surgical Oncology | Issue 1/2013

Login to get access

Abstract

Background

We used a large population-based data set to create a clinical decision support system (CDSS) for real-time estimation of overall survival (OS) among colon cancer (CC) patients. Patients with CC diagnosed between 1969 and 2006 were identified from the Surveillance Epidemiology and End Results (SEER) registry. Low- and high-risk cohorts were defined. The tenfold cross-validation assessed predictive utility of the machine-learned Bayesian belief network (ml-BBN) model for clinical decision support (CDS).

Methods

A data set consisting of 146,248 records was analyzed using ml-BBN models to provide CDS in estimating OS based on prognostic factors at 12-, 24-, 36-, and 60-month post-treatment follow-up.

Results

Independent prognostic factors in the ml-BBN model included age, race; primary tumor histology, grade and location; Number of primaries, AJCC T stage, N stage, and M stage. The ml-BBN model accurately estimated OS with area under the receiver-operating-characteristic curve of 0.85, thereby improving significantly upon existing AJCC stage-specific OS estimates. Significant differences in OS were found between low- and high-risk cohorts (odds ratios for mortality: 17.1, 16.3, 13.9, and 8.8 for 12-, 24-, 36-, and 60-month cohorts, respectively).

Conclusions

A CDSS was developed to provide individualized estimates of survival in CC. This ml-BBN model provides insights as to how disease-specific factors influence outcome. Time-dependent, individualized mortality risk assessments may inform treatment decisions and facilitate clinical trial design.
Literature
1.
go back to reference Edwards BK, Ward E, Kohler BA, Eheman C, Zauber AG, Anderson RN, et al. Annual report to the nation on the status of cancer, 1975–2006, featuring colorectal cancer trends and impact of interventions (risk factors, screening, and treatment) to reduce future rates. Cancer. 2010;116:544–73.PubMedCrossRef Edwards BK, Ward E, Kohler BA, Eheman C, Zauber AG, Anderson RN, et al. Annual report to the nation on the status of cancer, 1975–2006, featuring colorectal cancer trends and impact of interventions (risk factors, screening, and treatment) to reduce future rates. Cancer. 2010;116:544–73.PubMedCrossRef
2.
go back to reference Vlug MS, Wind J, Hollmann MW, Ubbink DT, Cense HA, Engel AF, et al. Laparoscopy in combination with fast track multimodal management is the best perioperative strategy in patients undergoing colonic surgery: a randomized clinical trial (LAFA-study). Ann Surg. 2011;254:868–75.PubMedCrossRef Vlug MS, Wind J, Hollmann MW, Ubbink DT, Cense HA, Engel AF, et al. Laparoscopy in combination with fast track multimodal management is the best perioperative strategy in patients undergoing colonic surgery: a randomized clinical trial (LAFA-study). Ann Surg. 2011;254:868–75.PubMedCrossRef
3.
go back to reference Baldwin LM, Dobie SA, Billingsley K, Cai Y, Wright GE, Dominitz JA, et al., Explaining black-white differences in receipt of recommended colon cancer treatment, J Natl Cancer Inst. 2005;97:1211–20.PubMedCrossRef Baldwin LM, Dobie SA, Billingsley K, Cai Y, Wright GE, Dominitz JA, et al., Explaining black-white differences in receipt of recommended colon cancer treatment, J Natl Cancer Inst. 2005;97:1211–20.PubMedCrossRef
4.
go back to reference Cooper GS, Yuan Z, Landefeld CS. Surgery for colorectal cancer: Race-related differences in rates and survival among Medicare beneficiaries. Am J Public Health. 1996;86:582–6.PubMedCrossRef Cooper GS, Yuan Z, Landefeld CS. Surgery for colorectal cancer: Race-related differences in rates and survival among Medicare beneficiaries. Am J Public Health. 1996;86:582–6.PubMedCrossRef
5.
go back to reference Jessup JM, Gunderson LL, Greene FL, Washington MK, Compton CC, Sobin LH, et al. 2010 staging system for colon and rectal carcinoma. Ann Surg Oncol. 2011;18:1513–7.CrossRef Jessup JM, Gunderson LL, Greene FL, Washington MK, Compton CC, Sobin LH, et al. 2010 staging system for colon and rectal carcinoma. Ann Surg Oncol. 2011;18:1513–7.CrossRef
6.
go back to reference Edge SB, Byrd DR, Compton CC, Fritz AG, Greene FL, Trotti A, eds. AJCC Cancer Staging Manual. 7th ed. New York: Springer, 2010. Edge SB, Byrd DR, Compton CC, Fritz AG, Greene FL, Trotti A, eds. AJCC Cancer Staging Manual. 7th ed. New York: Springer, 2010.
7.
go back to reference Burnside ES, Rubin DL, Fine JP, Shachter RD, Sisney GA, Leung WK. Bayesian network to predict breast cancer risk of mammographic microcalcifications and reduce number of benign biopsy results: initial experience. Radiology. 2006;240:666–73.PubMedCrossRef Burnside ES, Rubin DL, Fine JP, Shachter RD, Sisney GA, Leung WK. Bayesian network to predict breast cancer risk of mammographic microcalcifications and reduce number of benign biopsy results: initial experience. Radiology. 2006;240:666–73.PubMedCrossRef
8.
go back to reference Maskery SM, Hu H, Hooke J, Shriver CD, Liebman MN. A Bayesian derived network of breast pathology co-occurrence. J Biomed Inform. 2008;41:242–50.PubMedCrossRef Maskery SM, Hu H, Hooke J, Shriver CD, Liebman MN. A Bayesian derived network of breast pathology co-occurrence. J Biomed Inform. 2008;41:242–50.PubMedCrossRef
9.
go back to reference Stojadinovic A, Eberhardt C, Henry L, Eberhardt JS, Elster EA, People GE, et al. Development of a Bayesian classifier for breast cancer risk stratification: a feasibility study. Eplasty. 2010;10:e25.PubMed Stojadinovic A, Eberhardt C, Henry L, Eberhardt JS, Elster EA, People GE, et al. Development of a Bayesian classifier for breast cancer risk stratification: a feasibility study. Eplasty. 2010;10:e25.PubMed
10.
go back to reference Stojadinovic A, Peoples GE, Libutti SK, Henry LR, Eberhardt J, Howard RS, et al. Development of a clinical decision model for thyroid nodules. BMC Surg. 2009;9:12.PubMedCrossRef Stojadinovic A, Peoples GE, Libutti SK, Henry LR, Eberhardt J, Howard RS, et al. Development of a clinical decision model for thyroid nodules. BMC Surg. 2009;9:12.PubMedCrossRef
11.
go back to reference Berner ES. Clinical decision support systems: State of the Art. AHRQ Publication No. 09-0069-EF. Rockville, MD: Agency for Healthcare Research and Quality. June 2009. Berner ES. Clinical decision support systems: State of the Art. AHRQ Publication No. 09-0069-EF. Rockville, MD: Agency for Healthcare Research and Quality. June 2009.
12.
go back to reference Greene FL, Page DL, Fleming ID, Fritz A, Balch CM, Haller DG, et al., eds. AJCC Cancer Staging Manual. 6th ed. New York: Springer. 2002. Greene FL, Page DL, Fleming ID, Fritz A, Balch CM, Haller DG, et al., eds. AJCC Cancer Staging Manual. 6th ed. New York: Springer. 2002.
13.
go back to reference Classification for Extent of Disease, Self Instructional Manual for Tumor Registrars, Surveillance, Epidemiology, End Results Program, National Cancer Institute, National Institute of Health; Bethesda, MD, 1977. Classification for Extent of Disease, Self Instructional Manual for Tumor Registrars, Surveillance, Epidemiology, End Results Program, National Cancer Institute, National Institute of Health; Bethesda, MD, 1977.
14.
go back to reference SEER Summary Stage Manual, 2000, Surveillance, Epidemiology, End Results Program, National Cancer Institute, National Institute of Health; Bethesda, MD, 2001. SEER Summary Stage Manual, 2000, Surveillance, Epidemiology, End Results Program, National Cancer Institute, National Institute of Health; Bethesda, MD, 2001.
15.
go back to reference SEER Extent of Disease (EOD), Surveillance, Epidemiology, End Results Program, National Cancer Institute, National Institute of Health; Bethesda, MD, 1998. SEER Extent of Disease (EOD), Surveillance, Epidemiology, End Results Program, National Cancer Institute, National Institute of Health; Bethesda, MD, 1998.
16.
go back to reference Lavoti PW, Dawson R, Shera D. A multiple imputation strategy for clinical trials with truncation of patient data. Stat Med. 1995;14:1913–25.CrossRef Lavoti PW, Dawson R, Shera D. A multiple imputation strategy for clinical trials with truncation of patient data. Stat Med. 1995;14:1913–25.CrossRef
17.
go back to reference R: A Language and Environment for Statistical Computing, R Development Core Team. Vienna, Austria: R Foundation for Statistical Computing. 2011. ISBN 3-900051-07-0, http://www.R-project.org. R: A Language and Environment for Statistical Computing, R Development Core Team. Vienna, Austria: R Foundation for Statistical Computing. 2011. ISBN 3-900051-07-0, http://​www.​R-project.​org.
18.
go back to reference Forsberg JA, Eberhardt J, Boland PJ, Wedin R, Healey JH. Estimating survival in patients with operable skeletal metastases: an application of a Bayesian belief network. PLoS One. 2011;6:e19956.PubMedCrossRef Forsberg JA, Eberhardt J, Boland PJ, Wedin R, Healey JH. Estimating survival in patients with operable skeletal metastases: an application of a Bayesian belief network. PLoS One. 2011;6:e19956.PubMedCrossRef
19.
go back to reference Stojadinovic A, Nissan A, Eberhardt J, Chua TC, Pelz JO, Esquivel J. Development of a Bayesian belief network model for personalized prognostic risk assessment in colon carcinomatosis. Am Surg. 2011;77:221–30.PubMed Stojadinovic A, Nissan A, Eberhardt J, Chua TC, Pelz JO, Esquivel J. Development of a Bayesian belief network model for personalized prognostic risk assessment in colon carcinomatosis. Am Surg. 2011;77:221–30.PubMed
20.
go back to reference Jensen F. An Introduction to Bayesian Networks. New York: Springer-Verlag, 1996. Jensen F. An Introduction to Bayesian Networks. New York: Springer-Verlag, 1996.
21.
go back to reference Moraleda J, Miller T. Ad+tree: A compact adaptation of dynamic ad-trees for efficient machine learning on large data sets. Proceedings of the 4th International Conference on Intelligent Data Engineering and Automated Learning. 2002. Moraleda J, Miller T. Ad+tree: A compact adaptation of dynamic ad-trees for efficient machine learning on large data sets. Proceedings of the 4th International Conference on Intelligent Data Engineering and Automated Learning. 2002.
22.
go back to reference Pearl J. (1988) Probabilistic Reasoning in Intelligent Systems: Networks of Plausible Inference. San Mateo, CA: Morgan Kaufmann, San Mateo, CA, 1988. Pearl J. (1988) Probabilistic Reasoning in Intelligent Systems: Networks of Plausible Inference. San Mateo, CA: Morgan Kaufmann, San Mateo, CA, 1988.
23.
go back to reference Stojadinovic A, Eberhardt J, Brown TS, Hawksworth JS, Gage F, Tadaki DK, et al. Development of a Bayesian model to estimate health care outcomes in the severely wounded. J Multidiscip Healthc. 2010;3:125–35.PubMedCrossRef Stojadinovic A, Eberhardt J, Brown TS, Hawksworth JS, Gage F, Tadaki DK, et al. Development of a Bayesian model to estimate health care outcomes in the severely wounded. J Multidiscip Healthc. 2010;3:125–35.PubMedCrossRef
24.
go back to reference Osheroff JA, Teich JM, Middleton BF, Steen EB, Wright A, Detmer DE. A roadmap for national action on clinical decision support. J Am Med Inform Assoc. 2007;14:141–5.PubMedCrossRef Osheroff JA, Teich JM, Middleton BF, Steen EB, Wright A, Detmer DE. A roadmap for national action on clinical decision support. J Am Med Inform Assoc. 2007;14:141–5.PubMedCrossRef
25.
go back to reference Ueno H, Mochizuki H, Shirouzu K, Kusumi T, Yamada K, Ikegami M, et al. Actual status of distribution and prognostic impact of extramural discontinuous cancer spread in colorectal cancer. J Clin Oncol. 2011;29:2550–6.PubMedCrossRef Ueno H, Mochizuki H, Shirouzu K, Kusumi T, Yamada K, Ikegami M, et al. Actual status of distribution and prognostic impact of extramural discontinuous cancer spread in colorectal cancer. J Clin Oncol. 2011;29:2550–6.PubMedCrossRef
26.
go back to reference Smith DD, Schwarz RR, Schwarz RE. Impact of total lymph node count on staging and survival after gastrectomy for gastric cancer: Data from a large U.S. population database. J Clin Oncol. 2005;23:7114–24.PubMedCrossRef Smith DD, Schwarz RR, Schwarz RE. Impact of total lymph node count on staging and survival after gastrectomy for gastric cancer: Data from a large U.S. population database. J Clin Oncol. 2005;23:7114–24.PubMedCrossRef
27.
go back to reference Schwarz RE, Smith DD. Extent of lymph node retrieval and pancreatic cancer survival: information from a large US population database. Ann Surg Oncol. 2006;13:1189–2006.PubMedCrossRef Schwarz RE, Smith DD. Extent of lymph node retrieval and pancreatic cancer survival: information from a large US population database. Ann Surg Oncol. 2006;13:1189–2006.PubMedCrossRef
28.
go back to reference Ravdin PM, Siminoff LA, Davis GJ, Mercer MB, Hewlett J, Gerson N, et al. Computer program to assist in making decisions about adjuvant therapy for women with early breast cancer. J Clin Oncol. 2001;19:980–91.PubMed Ravdin PM, Siminoff LA, Davis GJ, Mercer MB, Hewlett J, Gerson N, et al. Computer program to assist in making decisions about adjuvant therapy for women with early breast cancer. J Clin Oncol. 2001;19:980–91.PubMed
29.
go back to reference Gribbin J, Dewis R; Adjuvant! Online: review of evidence concerning its validity, and other considerations relating to its use in the NHS; National Collaborating Centre for Cancer (UK). Early and Locally Advanced Breast Cancer: Diagnosis and Treatment [Internet]. Cardiff (UK): National Collaborating Centre for Cancer (UK); 2009 Feb. (NICE ClinicalGuidelines, No. 80). Gribbin J, Dewis R; Adjuvant! Online: review of evidence concerning its validity, and other considerations relating to its use in the NHS; National Collaborating Centre for Cancer (UK). Early and Locally Advanced Breast Cancer: Diagnosis and Treatment [Internet]. Cardiff (UK): National Collaborating Centre for Cancer (UK); 2009 Feb. (NICE ClinicalGuidelines, No. 80).
30.
go back to reference Weiser MR, Landmann RG, Kattan MW, Gonen M, Shia J, Chou J, et al. Individualized prediction of colon cancer recurrence using a nomogram. J Clin Oncol. 2008;26:380–5.PubMedCrossRef Weiser MR, Landmann RG, Kattan MW, Gonen M, Shia J, Chou J, et al. Individualized prediction of colon cancer recurrence using a nomogram. J Clin Oncol. 2008;26:380–5.PubMedCrossRef
31.
go back to reference Paik S, Shak S, Tang G, Kim C, Baker J, Cronin M, et al. A population-based study of tumor gene expression and risk of breast cancer death among lymph node-negative patients. N Engl J Med. 2004;351:2817–26.PubMedCrossRef Paik S, Shak S, Tang G, Kim C, Baker J, Cronin M, et al. A population-based study of tumor gene expression and risk of breast cancer death among lymph node-negative patients. N Engl J Med. 2004;351:2817–26.PubMedCrossRef
32.
go back to reference Habel LA, Shak S, Jacobs MK, Capra A, Alexander C, Pho M, et al. A population-based study of tumor gene expression and risk of breast cancer death among lymph node-negative patients. Breast Cancer Res. 2006;8:R25.PubMedCrossRef Habel LA, Shak S, Jacobs MK, Capra A, Alexander C, Pho M, et al. A population-based study of tumor gene expression and risk of breast cancer death among lymph node-negative patients. Breast Cancer Res. 2006;8:R25.PubMedCrossRef
Metadata
Title
Clinical Decision Support and Individualized Prediction of Survival in Colon Cancer: Bayesian Belief Network Model
Authors
Alexander Stojadinovic, MD
Anton Bilchik, MD, PhD
David Smith, PhD
John S. Eberhardt, BA
Elizabeth Ben Ward, MS
Aviram Nissan, MD
Eric K. Johnson, MD
Mladjan Protic, MD
George E. Peoples, MD
Itzhak Avital, MD
Scott R. Steele, MD
Publication date
01-01-2013
Publisher
Springer-Verlag
Published in
Annals of Surgical Oncology / Issue 1/2013
Print ISSN: 1068-9265
Electronic ISSN: 1534-4681
DOI
https://doi.org/10.1245/s10434-012-2555-4

Other articles of this Issue 1/2013

Annals of Surgical Oncology 1/2013 Go to the issue