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Published in: European Journal of Nuclear Medicine and Molecular Imaging 12/2021

01-11-2021 | Artificial Intelligence | Original Article

Deep learning for whole-body medical image generation

Authors: Joshua Schaefferkoetter, Jianhua Yan, Sangkyu Moon, Rosanna Chan, Claudia Ortega, Ur Metser, Alejandro Berlin, Patrick Veit-Haibach

Published in: European Journal of Nuclear Medicine and Molecular Imaging | Issue 12/2021

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Abstract

Background

Artificial intelligence (AI) algorithms based on deep convolutional networks have demonstrated remarkable success for image transformation tasks. State-of-the-art results have been achieved by generative adversarial networks (GANs) and training approaches which do not require paired data. Recently, these techniques have been applied in the medical field for cross-domain image translation.

Purpose

This study investigated deep learning transformation in medical imaging. It was motivated to identify generalizable methods which would satisfy the simultaneous requirements of quality and anatomical accuracy across the entire human body. Specifically, whole-body MR patient data acquired on a PET/MR system were used to generate synthetic CT image volumes. The capacity of these synthetic CT data for use in PET attenuation correction (AC) was evaluated and compared to current MR-based attenuation correction (MR-AC) methods, which typically use multiphase Dixon sequences to segment various tissue types.

Materials and methods

This work aimed to investigate the technical performance of a GAN system for general MR-to-CT volumetric transformation and to evaluate the performance of the generated images for PET AC. A dataset comprising matched, same-day PET/MR and PET/CT patient scans was used for validation.

Results

A combination of training techniques was used to produce synthetic images which were of high-quality and anatomically accurate. Higher correlation was found between the values of mu maps calculated directly from CT data and those derived from the synthetic CT images than those from the default segmented Dixon approach. Over the entire body, the total amounts of reconstructed PET activities were similar between the two MR-AC methods, but the synthetic CT method yielded higher accuracy for quantifying the tracer uptake in specific regions.

Conclusion

The findings reported here demonstrate the feasibility of this technique and its potential to improve certain aspects of attenuation correction for PET/MR systems. Moreover, this work may have larger implications for establishing generalized methods for inter-modality, whole-body transformation in medical imaging. Unsupervised deep learning techniques can produce high-quality synthetic images, but additional constraints may be needed to maintain medical integrity in the generated data.

Graphical abstract

Literature
1.
go back to reference Yi X, Walia E, Babyn P. Generative adversarial network in medical imaging: a review. Med Image Anal. 2019;58:101552.CrossRef Yi X, Walia E, Babyn P. Generative adversarial network in medical imaging: a review. Med Image Anal. 2019;58:101552.CrossRef
2.
go back to reference Dar SU, et al. Image synthesis in multi-contrast MRI with conditional generative adversarial networks. IEEE Trans Med Imaging. 2019;38(10):2375–88.CrossRef Dar SU, et al. Image synthesis in multi-contrast MRI with conditional generative adversarial networks. IEEE Trans Med Imaging. 2019;38(10):2375–88.CrossRef
3.
go back to reference Armanious K, et al. Unsupervised medical image translation using Cycle-MedGAN. In 2019 27th European Signal Processing Conference (EUSIPCO). 2019. IEEE. Armanious K, et al. Unsupervised medical image translation using Cycle-MedGAN. In 2019 27th European Signal Processing Conference (EUSIPCO). 2019. IEEE.
4.
go back to reference Leynes AP, et al. Zero-echo-time and Dixon deep pseudo-CT (ZeDD CT): direct generation of pseudo-CT images for pelvic PET/MRI attenuation correction using deep convolutional neural networks with multiparametric MRI. J Nucl Med. 2018;59(5):852–8.CrossRef Leynes AP, et al. Zero-echo-time and Dixon deep pseudo-CT (ZeDD CT): direct generation of pseudo-CT images for pelvic PET/MRI attenuation correction using deep convolutional neural networks with multiparametric MRI. J Nucl Med. 2018;59(5):852–8.CrossRef
5.
go back to reference Armanious K, et al. Independent attenuation correction of whole body [18 F] FDG-PET using a deep learning approach with Generative Adversarial Networks. EJNMMI Res. 2020;10:1–9.CrossRef Armanious K, et al. Independent attenuation correction of whole body [18 F] FDG-PET using a deep learning approach with Generative Adversarial Networks. EJNMMI Res. 2020;10:1–9.CrossRef
6.
go back to reference Hwang D, et al. Generation of PET attenuation map for whole-body time-of-flight 18F-FDG PET/MRI using a deep neural network trained with simultaneously reconstructed activity and attenuation maps. J Nucl Med. 2019;60(8):1183–9.CrossRef Hwang D, et al. Generation of PET attenuation map for whole-body time-of-flight 18F-FDG PET/MRI using a deep neural network trained with simultaneously reconstructed activity and attenuation maps. J Nucl Med. 2019;60(8):1183–9.CrossRef
7.
go back to reference Michel, C.J. and J. Nuyts, Completion of truncated attenuation maps using maximum likelihood estimation of attenuation and activity (MLAA). 2013, Google Patents. Michel, C.J. and J. Nuyts, Completion of truncated attenuation maps using maximum likelihood estimation of attenuation and activity (MLAA). 2013, Google Patents.
8.
go back to reference Zhu, J.-Y., et al. Unpaired image-to-image translation using cycle-consistent adversarial networks. in Proceedings of the IEEE international conference on computer vision. 2017. Zhu, J.-Y., et al. Unpaired image-to-image translation using cycle-consistent adversarial networks. in Proceedings of the IEEE international conference on computer vision. 2017.
9.
go back to reference Wolterink, J.M., et al. Deep MR to CT synthesis using unpaired data. In International workshop on simulation and synthesis in medical imaging. 2017. Springer. Wolterink, J.M., et al. Deep MR to CT synthesis using unpaired data. In International workshop on simulation and synthesis in medical imaging. 2017. Springer.
10.
go back to reference Ge, Y., et al. Unpaired whole-body MR to CT synthesis with correlation coefficient constrained adversarial learning. In Medical Imaging 2019: Image Processing. 2019. International Society for Optics and Photonics. Ge, Y., et al. Unpaired whole-body MR to CT synthesis with correlation coefficient constrained adversarial learning. In Medical Imaging 2019: Image Processing. 2019. International Society for Optics and Photonics.
11.
go back to reference Dong X, et al. Deep learning-based attenuation correction in the absence of structural information for whole-body positron emission tomography imaging. Phys Med Biol. 2020;65(5):055011.CrossRef Dong X, et al. Deep learning-based attenuation correction in the absence of structural information for whole-body positron emission tomography imaging. Phys Med Biol. 2020;65(5):055011.CrossRef
12.
go back to reference Johnson, J., A. Alahi, and L. Fei-Fei. Perceptual losses for real-time style transfer and super-resolution. In European conference on computer vision. 2016. Springer. Johnson, J., A. Alahi, and L. Fei-Fei. Perceptual losses for real-time style transfer and super-resolution. In European conference on computer vision. 2016. Springer.
13.
go back to reference Li, C. and M. Wand. Precomputed real-time texture synthesis with markovian generative adversarial networks. In European conference on computer vision. 2016. Springer. Li, C. and M. Wand. Precomputed real-time texture synthesis with markovian generative adversarial networks. In European conference on computer vision. 2016. Springer.
14.
go back to reference Isola, P., et al. Image-to-image translation with conditional adversarial networks. in Proceedings of the IEEE conference on computer vision and pattern recognition. 2017. Isola, P., et al. Image-to-image translation with conditional adversarial networks. in Proceedings of the IEEE conference on computer vision and pattern recognition. 2017.
15.
go back to reference Breuer FA, et al. Controlled aliasing in parallel imaging results in higher acceleration (CAIPIRINHA) for multi-slice imaging. Magnetic Resonance in Medicine: An Official Journal of the International Society for Magnetic Resonance in Medicine. 2005;53(3):684–91.CrossRef Breuer FA, et al. Controlled aliasing in parallel imaging results in higher acceleration (CAIPIRINHA) for multi-slice imaging. Magnetic Resonance in Medicine: An Official Journal of the International Society for Magnetic Resonance in Medicine. 2005;53(3):684–91.CrossRef
16.
go back to reference Carney JP, et al. Method for transforming CT images for attenuation correction in PET/CT imaging. Med Phys. 2006;33(4):976–83. Carney JP, et al. Method for transforming CT images for attenuation correction in PET/CT imaging. Med Phys. 2006;33(4):976–83.
17.
go back to reference Szabo Z, et al. Initial evaluation of [18F] DCFPyL for prostate-specific membrane antigen (PSMA)-targeted PET imaging of prostate cancer. Mol Imaging Biol. 2015;17(4):565–74.CrossRef Szabo Z, et al. Initial evaluation of [18F] DCFPyL for prostate-specific membrane antigen (PSMA)-targeted PET imaging of prostate cancer. Mol Imaging Biol. 2015;17(4):565–74.CrossRef
Metadata
Title
Deep learning for whole-body medical image generation
Authors
Joshua Schaefferkoetter
Jianhua Yan
Sangkyu Moon
Rosanna Chan
Claudia Ortega
Ur Metser
Alejandro Berlin
Patrick Veit-Haibach
Publication date
01-11-2021
Publisher
Springer Berlin Heidelberg
Published in
European Journal of Nuclear Medicine and Molecular Imaging / Issue 12/2021
Print ISSN: 1619-7070
Electronic ISSN: 1619-7089
DOI
https://doi.org/10.1007/s00259-021-05413-0

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