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Published in: BMC Public Health 1/2019

Open Access 01-12-2019 | Acute Gastroenteritis | Research article

Rotavirus gastroenteritis in Indian children < 5 years hospitalized for diarrhoea, 2012 to 2016

Authors: Sidhartha Giri, Nayana P. Nair, Ann Mathew, B. Manohar, Anna Simon, Tejinder Singh, S. Suresh Kumar, M. A. Mathew, Sudhir Babji, Rashmi Arora, C. P. Girish Kumar, S. Venkatasubramanian, Sanjay Mehendale, Mohan D. Gupte, Gagandeep Kang

Published in: BMC Public Health | Issue 1/2019

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Abstract

Background

In 2016, the Government of India introduced the oral rotavirus vaccine (ROTAVAC, Bharat Biotech, India) in 4 states of India as part of the Universal Immunization Programme, and expanded to 5 more states in 2017. We report four years of data on rotavirus gastroenteritis in hospitalized children < 5 years of age prior to vaccine introduction.

Methods

Children from 7 sites in southern and northern India hospitalized for diarrhoea were recruited between July 2012 and June 2016. Stool samples were screened for rotavirus using enzyme immunoassay (EIA). The EIA positive samples were genotyped by reverse-transcription polymerase chain reaction.

Results

Of the 5834 samples from the 7 sites, 2069 (35.5%) were positive for rotavirus by EIA. Genotyping was performed for 2010 (97.1%) samples. G1P[8](56.3%), G2P[4](9.1%), G9P[4](7.6%), G9P[8](4.2%), and G12P[6](3.7%) were the common genotypes in southern India and G1P[8](36%), G9P[4](11.4%), G2P[4](11.2%), G12P[6](8.4%), and G3P[8](5.9%) in northern India.

Conclusions

The study highlights the high prevalence of rotavirus gastroenteritis in India and the diversity of rotavirus genotypes across different geographical regions. Pre- vaccine surveillance data is necessary to evaluate the potential change in admission rates for gastroenteritis and circulating rotavirus genotypes after vaccine introduction, thus assessing impact.
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Literature
1.
go back to reference Santos N, Hoshino Y. Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine. Rev Med Virol. 2005;15:29–56.CrossRef Santos N, Hoshino Y. Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine. Rev Med Virol. 2005;15:29–56.CrossRef
2.
go back to reference John J, Sarkar R, Muliyil JBN, Bhan MK, Kang G. Rotavirus gastroenteritis in India, 2011-2013: Revised estimates of disease burden and potential impact of vaccines. Vaccine. 2014, 32S:A5–9. John J, Sarkar R, Muliyil JBN, Bhan MK, Kang G. Rotavirus gastroenteritis in India, 2011-2013: Revised estimates of disease burden and potential impact of vaccines. Vaccine. 2014, 32S:A5–9.
3.
go back to reference Kang G, Desai R, Arora R, Chitambar S, Naik TN, Krishnan T, et al. Diversity of circulating rotavirus strains in children hospitalized with diarrhoea in India, 2005–2009. Vaccine. 2013;31:2879–83.CrossRef Kang G, Desai R, Arora R, Chitambar S, Naik TN, Krishnan T, et al. Diversity of circulating rotavirus strains in children hospitalized with diarrhoea in India, 2005–2009. Vaccine. 2013;31:2879–83.CrossRef
4.
go back to reference Babji S, Arumugam R, Saravanabhavan A, Moses PD, Simon A, Aggarwal I, et al. Multi-center surveillance of rotavirus diarrhoea in hospitalizedchildren <5 years of age in India, 2009–2012. Vaccine. 2014;32S:A10–2.CrossRef Babji S, Arumugam R, Saravanabhavan A, Moses PD, Simon A, Aggarwal I, et al. Multi-center surveillance of rotavirus diarrhoea in hospitalizedchildren <5 years of age in India, 2009–2012. Vaccine. 2014;32S:A10–2.CrossRef
5.
go back to reference Saluja T, Sharma SD, Gupta M, Kundu R, Kar S, Dutta A, et al. A multicenter prospective hospital-based surveillance to estimatethe burden of rotavirus gastroenteritis in children less than five yearsof age in India. Vaccine. 2014;32S:A13–9.CrossRef Saluja T, Sharma SD, Gupta M, Kundu R, Kar S, Dutta A, et al. A multicenter prospective hospital-based surveillance to estimatethe burden of rotavirus gastroenteritis in children less than five yearsof age in India. Vaccine. 2014;32S:A13–9.CrossRef
6.
go back to reference Kang G, Arora R, Chitambar SD, Deshpande J, Gupte MD, Kulkarni M, et al. Multicenter, hospital-based surveillance of rotavirus disease and strains among Indian children aged <5 years. J Infect Dis. 2009;200:S147–53.CrossRef Kang G, Arora R, Chitambar SD, Deshpande J, Gupte MD, Kulkarni M, et al. Multicenter, hospital-based surveillance of rotavirus disease and strains among Indian children aged <5 years. J Infect Dis. 2009;200:S147–53.CrossRef
7.
go back to reference Kahn G, Fitzwater S, Tate J, Kang G, Ganguly N, Nair G, et al. Epidemiology and prospects for prevention of rotavirus disease in India. Indian Pediatr. 2012;49:467–74.CrossRef Kahn G, Fitzwater S, Tate J, Kang G, Ganguly N, Nair G, et al. Epidemiology and prospects for prevention of rotavirus disease in India. Indian Pediatr. 2012;49:467–74.CrossRef
8.
go back to reference Bhandari N, Rongsen-Chandola T, Bavdekar A, John J, Antony K, Taneja S, et al. Efficacy of a monovalent human-bovine (116E) rotavirus vaccine in Indian infants: a randomised double blind placebo controlled trial. Lancet. 2014;383:2136–43.CrossRef Bhandari N, Rongsen-Chandola T, Bavdekar A, John J, Antony K, Taneja S, et al. Efficacy of a monovalent human-bovine (116E) rotavirus vaccine in Indian infants: a randomised double blind placebo controlled trial. Lancet. 2014;383:2136–43.CrossRef
9.
go back to reference Bresee J, Parashar U, Holman R, Gentsch J, Glass R. Generic protocols for (i) hospital-based surveillance to estimate the burden of rotavirus gastroenteritis in children and (ii) a community-based survey on utilization of health care services for gastroenteritis in children. Document WHO/V&B/02 15. Geneva: World Health Organization; 2002. p. 20021–67. Bresee J, Parashar U, Holman R, Gentsch J, Glass R. Generic protocols for (i) hospital-based surveillance to estimate the burden of rotavirus gastroenteritis in children and (ii) a community-based survey on utilization of health care services for gastroenteritis in children. Document WHO/V&B/02 15. Geneva: World Health Organization; 2002. p. 20021–67.
10.
go back to reference Lewis K. Vesikari clinical severity scoring system manual-path; 2011. Lewis K. Vesikari clinical severity scoring system manual-path; 2011.
11.
go back to reference World Health Organization. Manual of rotavirus detection and characterization methods. Geneva: World Health Organization; 2009. World Health Organization. Manual of rotavirus detection and characterization methods. Geneva: World Health Organization; 2009.
12.
go back to reference Iturriza-Gomara M, Green J, Brown DWG, Desselberger U, Gray JJ. Comparison of specific and random priming in the reverse transcriptase polymerase chain reaction for genotyping group a rotaviruses. J Virol Methods. 1999;78:93–103.CrossRef Iturriza-Gomara M, Green J, Brown DWG, Desselberger U, Gray JJ. Comparison of specific and random priming in the reverse transcriptase polymerase chain reaction for genotyping group a rotaviruses. J Virol Methods. 1999;78:93–103.CrossRef
13.
go back to reference Banerjee I, Ramani S, Primrose B, Iturriza-Gomara M, Gray JJ, Brown DW, et al. Modification of rotavirus multiplex RT-PCR for the detection of G12 strains based on characterization of emerging G12 rotavirus strains from South India. J Med Virol. 2007;79:1413–21.CrossRef Banerjee I, Ramani S, Primrose B, Iturriza-Gomara M, Gray JJ, Brown DW, et al. Modification of rotavirus multiplex RT-PCR for the detection of G12 strains based on characterization of emerging G12 rotavirus strains from South India. J Med Virol. 2007;79:1413–21.CrossRef
14.
go back to reference Taniguchi K, Urasawa T, Kobayashi M, Gorziglia M, Urasawa S. Nucleotide sequence of VP4 and VP7 genes of human rotaviruses with subgroup I specificity and long RNA pattern: implication for new G serotype specificity. J Virol. 1990;64:5640–4.PubMedPubMedCentral Taniguchi K, Urasawa T, Kobayashi M, Gorziglia M, Urasawa S. Nucleotide sequence of VP4 and VP7 genes of human rotaviruses with subgroup I specificity and long RNA pattern: implication for new G serotype specificity. J Virol. 1990;64:5640–4.PubMedPubMedCentral
15.
go back to reference Rahman M, Matthijnssens J, Yang X, Belbeke T, Arijs I, Taniguchi K, et al. Evolutionary history and global spread of the emerging G12 human rotaviruses. J Virol. 2007;81:2382–90.CrossRef Rahman M, Matthijnssens J, Yang X, Belbeke T, Arijs I, Taniguchi K, et al. Evolutionary history and global spread of the emerging G12 human rotaviruses. J Virol. 2007;81:2382–90.CrossRef
16.
go back to reference Das S, Varghese V, Chaudhury S, Barman P, Mahapatra S, Kojima K. Emergence of novel human group a rotavirus G12 strains in India. J Clin Microbiol. 2003;41:2760–2.CrossRef Das S, Varghese V, Chaudhury S, Barman P, Mahapatra S, Kojima K. Emergence of novel human group a rotavirus G12 strains in India. J Clin Microbiol. 2003;41:2760–2.CrossRef
17.
go back to reference Sharma S, Ray P, Gentsch JR, Glass RI, Kalra V, Bhan MK. Emergence of G12 rotavirus strains in Delhi, India, in 2000 to 2007. J Clin Microbiol. 2008;46:1343–8.CrossRef Sharma S, Ray P, Gentsch JR, Glass RI, Kalra V, Bhan MK. Emergence of G12 rotavirus strains in Delhi, India, in 2000 to 2007. J Clin Microbiol. 2008;46:1343–8.CrossRef
18.
go back to reference Bahl R, Ray P, Subodh S, Shambharkar P, Saxena M, Parashar U, et al. Incidence of severe rotavirus Diarrhoea in New Delhi, India, and G and P types of the infecting rotavirus strains. J Infect Dis. 2005;192:S114–9.CrossRef Bahl R, Ray P, Subodh S, Shambharkar P, Saxena M, Parashar U, et al. Incidence of severe rotavirus Diarrhoea in New Delhi, India, and G and P types of the infecting rotavirus strains. J Infect Dis. 2005;192:S114–9.CrossRef
19.
go back to reference Mishra V, Awasthi S, Nag VL, Tandon R. Genomic diversity of group a rotavirus strains in patients aged 1-36 months admitted for acute watery diarrhoea in northern India: a hospital-based study. Clin Microbiol Infect. 2010;16:45–50.CrossRef Mishra V, Awasthi S, Nag VL, Tandon R. Genomic diversity of group a rotavirus strains in patients aged 1-36 months admitted for acute watery diarrhoea in northern India: a hospital-based study. Clin Microbiol Infect. 2010;16:45–50.CrossRef
20.
21.
go back to reference Mathew MA, Paulose A, Chitralekha S, Nair MKC, Kang G, Kilgore P. Prevalence of rotavirus Diarrhoea among hospitalized under-five children. Indian Pediatr. 2014;51:27–31.CrossRef Mathew MA, Paulose A, Chitralekha S, Nair MKC, Kang G, Kilgore P. Prevalence of rotavirus Diarrhoea among hospitalized under-five children. Indian Pediatr. 2014;51:27–31.CrossRef
22.
go back to reference Mullick S, Mandal P, Nayak MK, Ghosh S, De P, Rajendran K, et al. Hospital based surveillance and genetic characterization of rotavirusstrains in children (<5 years) with acute gastroenteritis in Kolkata,India, revealed resurgence of G9 and G2 genotypes during 2011–2013. Vaccine. 2014;32S:A20–8.CrossRef Mullick S, Mandal P, Nayak MK, Ghosh S, De P, Rajendran K, et al. Hospital based surveillance and genetic characterization of rotavirusstrains in children (<5 years) with acute gastroenteritis in Kolkata,India, revealed resurgence of G9 and G2 genotypes during 2011–2013. Vaccine. 2014;32S:A20–8.CrossRef
23.
go back to reference Tiku VR, Sharma S, Verma A, Kumar P, Raghavendhar S, Aneja S, et al. Rotavirus diversity among diarrhoeal children in Delhi, India during 2007-2012. Vaccine. 2014;32S:A62–7.CrossRef Tiku VR, Sharma S, Verma A, Kumar P, Raghavendhar S, Aneja S, et al. Rotavirus diversity among diarrhoeal children in Delhi, India during 2007-2012. Vaccine. 2014;32S:A62–7.CrossRef
24.
go back to reference Mukherjee A, Chattopadhyay S, Bagchi P, Dutta D, Singh NB, Arora R, et al. Surveillance and molecular characterization of rotavirus strains circulating in Manipur, north-eastern India: increasing prevalence of emerging G12 strains. Infect Genet Evol. 2010;10:311–20.CrossRef Mukherjee A, Chattopadhyay S, Bagchi P, Dutta D, Singh NB, Arora R, et al. Surveillance and molecular characterization of rotavirus strains circulating in Manipur, north-eastern India: increasing prevalence of emerging G12 strains. Infect Genet Evol. 2010;10:311–20.CrossRef
25.
go back to reference Chakravarti A, Chauhan MS, Sharma A, Verma V. Distribution of human rotavirus G and P genotypes in a hospital setting from Northern India. Southeast Asian J Trop Med Public Health. 2010;41:1145–52.PubMed Chakravarti A, Chauhan MS, Sharma A, Verma V. Distribution of human rotavirus G and P genotypes in a hospital setting from Northern India. Southeast Asian J Trop Med Public Health. 2010;41:1145–52.PubMed
Metadata
Title
Rotavirus gastroenteritis in Indian children < 5 years hospitalized for diarrhoea, 2012 to 2016
Authors
Sidhartha Giri
Nayana P. Nair
Ann Mathew
B. Manohar
Anna Simon
Tejinder Singh
S. Suresh Kumar
M. A. Mathew
Sudhir Babji
Rashmi Arora
C. P. Girish Kumar
S. Venkatasubramanian
Sanjay Mehendale
Mohan D. Gupte
Gagandeep Kang
Publication date
01-12-2019
Publisher
BioMed Central
Published in
BMC Public Health / Issue 1/2019
Electronic ISSN: 1471-2458
DOI
https://doi.org/10.1186/s12889-019-6406-0

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