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Published in: Indian Journal of Pediatrics 1/2021

01-03-2021 | Acute Gastroenteritis | Original Article

Genetic Characteristics of Rotavirus Acute Gastroenteritis Among Hospitalized Children of Odisha in Eastern India

Authors: Subal Kumar Pradhan, Sumanta Panigrahi, Pooja Sagar Padhi, Varunkumar Thiyagarajan, Saroj Kumar Satpathy

Published in: Indian Journal of Pediatrics | Special Issue 1/2021

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Abstract

Objective

To generate epidemiological data of rotavirus diarrhea among hospitalized children less than 5 y of age and to characterize the circulating rotavirus genotypes post introduction of rotavirus vaccine in Universal Immunization Program (UIP).

Methods

This prospective study was conducted from April 2016 to July 2019 at Sardar Vallabhbhai Patel Post Graduate Institute of Paediatrics & SCB Medical College, Cuttack, Odisha among hospitalized children with acute gastroenteritis (AGE) under five years of age. Stool samples collected were tested for rotavirus by a commercial enzyme immunoassay and strains were characterized by reverse-transcription polymerase chain reaction (PCR). The data was analysed using a chi-square test with 95% confidence interval and risk ratio.

Results

Rotavirus diarrhea was seen in 715 (36.4%) of the 1963 samples tested. The peak incidence of rotavirus diarrhea was during the winter season, i.e., from the month of December to February. Most of the infections were in children between 6 mo to 2 y of age, affecting boys and girls equally. The commonest genotypes were G3P[8] (50.34%) followed by G1P[8] (17.46%).

Conclusion

This study highlights the high prevalence of rotavirus diarrhea among children which emphasize the need for continued rotavirus vaccination. The changing patterns of genotype distribution stress the need for continued surveillance post introduction of vaccines to understand the effect of vaccines on strain evolution over a longer period and detect emergence of new genotypes.
Literature
1.
go back to reference Tate JE, Burton AH, Boschi-Pinto C, Parashar UD, World Health Organization–Coordinated Global Rotavirus Surveillance Network. Global, regional, and national estimates of rotavirus mortality in children <5 years of age, 2000-2013. Clin Infect Dis. 2016;62:S96–105. Tate JE, Burton AH, Boschi-Pinto C, Parashar UD, World Health Organization–Coordinated Global Rotavirus Surveillance Network. Global, regional, and national estimates of rotavirus mortality in children <5 years of age, 2000-2013. Clin Infect Dis. 2016;62:S96–105.
2.
go back to reference Tate JE, Burton AH, Boschi-Pinto C, et al. 2008 estimate of worldwide rotavirus-associated mortality in children younger than 5 years before the introduction of universal rotavirus vaccination programmes: a systematic review and meta-analysis. Lancet Infect Dis. 2012;12(2):136–41. Tate JE, Burton AH, Boschi-Pinto C, et al. 2008 estimate of worldwide rotavirus-associated mortality in children younger than 5 years before the introduction of universal rotavirus vaccination programmes: a systematic review and meta-analysis. Lancet Infect Dis. 2012;12(2):136–41.
3.
go back to reference Nakawesi JS, Wobudeya E, Ndeezi G, Mworozi EA, Tumwine JK. Prevalence and factors associated with rotavirus infection among children admitted with acute diarrhea in Uganda. BMC Pediatr. 2010;10(1):69.CrossRef Nakawesi JS, Wobudeya E, Ndeezi G, Mworozi EA, Tumwine JK. Prevalence and factors associated with rotavirus infection among children admitted with acute diarrhea in Uganda. BMC Pediatr. 2010;10(1):69.CrossRef
4.
go back to reference Ruuska T, Vesikari T. Rotavirus disease in Finnish children: use of numerical scores for clinical severity of diarrhoeal episodes. Scand J Infect Dis. 1990;22(3):259–67.CrossRef Ruuska T, Vesikari T. Rotavirus disease in Finnish children: use of numerical scores for clinical severity of diarrhoeal episodes. Scand J Infect Dis. 1990;22(3):259–67.CrossRef
5.
go back to reference Raju B, Parikh RP, Vetter VV, Kolhapure S. Epidemiology of rotavirus gastroenteritis and need of high rotavirus vaccine coverage with early completion of vaccination schedule for protection against rotavirus diarrhea in India: a narrative review. Indian J Public Health. 2019;63(3):243–50.CrossRef Raju B, Parikh RP, Vetter VV, Kolhapure S. Epidemiology of rotavirus gastroenteritis and need of high rotavirus vaccine coverage with early completion of vaccination schedule for protection against rotavirus diarrhea in India: a narrative review. Indian J Public Health. 2019;63(3):243–50.CrossRef
6.
go back to reference Yu J, Lai S, Geng Q, et al. Prevalence of rotavirus and rapid changes in circulating rotavirus strains among children with acute diarrhea in China, 2009-2015. J Inf Secur. 2019;78(1):66–74. Yu J, Lai S, Geng Q, et al. Prevalence of rotavirus and rapid changes in circulating rotavirus strains among children with acute diarrhea in China, 2009-2015. J Inf Secur. 2019;78(1):66–74.
7.
go back to reference Kang G, Arora R, Chitambar SD, et al. Multicenter, hospital-based surveillance of rotavirus disease and strains among Indian children aged <5 years. J Infect Dis. 2009;200(Supplement_1):S147–53.CrossRef Kang G, Arora R, Chitambar SD, et al. Multicenter, hospital-based surveillance of rotavirus disease and strains among Indian children aged <5 years. J Infect Dis. 2009;200(Supplement_1):S147–53.CrossRef
8.
go back to reference Kumar A, Basu S, Vashishtha V, Choudhury P. Burden of rotavirus diarrhea in under-five Indian children. Indian Pediatr. 2016;53(7):607–17.CrossRef Kumar A, Basu S, Vashishtha V, Choudhury P. Burden of rotavirus diarrhea in under-five Indian children. Indian Pediatr. 2016;53(7):607–17.CrossRef
9.
go back to reference Mohanty E, Dwibedi B, Kar SK, Acharya AS. Epidemiological features and genetic characterization of virus strains in rotavirus associated gastroenteritis in children of Odisha in eastern India. Infect Genet Evol. 2017;53:77–84.CrossRef Mohanty E, Dwibedi B, Kar SK, Acharya AS. Epidemiological features and genetic characterization of virus strains in rotavirus associated gastroenteritis in children of Odisha in eastern India. Infect Genet Evol. 2017;53:77–84.CrossRef
10.
go back to reference Ruiz-Palacios GM, Pérez-Schael I, Velázquez FR, et al. Safety and efficacy of an attenuated vaccine against severe rotavirus gastroenteritis. N Engl J Med. 2006;354(1):11–22. Ruiz-Palacios GM, Pérez-Schael I, Velázquez FR, et al. Safety and efficacy of an attenuated vaccine against severe rotavirus gastroenteritis. N Engl J Med. 2006;354(1):11–22.
11.
go back to reference Vesikari T, Karvonen A, Prymula R, et al. Efficacy of human rotavirus vaccine against rotavirus gastroenteritis during the first 2 years of life in European infants: randomised, double-blind controlled study. Lancet. 2007;370(9601):1757–63. Vesikari T, Karvonen A, Prymula R, et al. Efficacy of human rotavirus vaccine against rotavirus gastroenteritis during the first 2 years of life in European infants: randomised, double-blind controlled study. Lancet. 2007;370(9601):1757–63.
12.
go back to reference Linhares AC, Velázquez FR, Pérez-Schael I, et al. Efficacy and safety of an oral live attenuated human rotavirus vaccine against rotavirus gastroenteritis during the first 2 years of life in Latin American infants: a randomised, double-blind, placebo-controlled phase III study. Lancet. 2008;371(9619):1181–9. Linhares AC, Velázquez FR, Pérez-Schael I, et al. Efficacy and safety of an oral live attenuated human rotavirus vaccine against rotavirus gastroenteritis during the first 2 years of life in Latin American infants: a randomised, double-blind, placebo-controlled phase III study. Lancet. 2008;371(9619):1181–9.
13.
go back to reference Nair NP, Reddy NS, Giri S, et al. Rotavirus vaccine impact assessment surveillance in India: protocol and methods. BMJ Open. 2019;9(4):e024840.CrossRef Nair NP, Reddy NS, Giri S, et al. Rotavirus vaccine impact assessment surveillance in India: protocol and methods. BMJ Open. 2019;9(4):e024840.CrossRef
14.
go back to reference Babji S, Arumugam R, Priyahemavathy R, et al. Genotype distribution of group A rotavirus from southern India, 2005-2016. Vaccine. 2018;36(51):7816–9. Babji S, Arumugam R, Priyahemavathy R, et al. Genotype distribution of group A rotavirus from southern India, 2005-2016. Vaccine. 2018;36(51):7816–9.
15.
go back to reference Qazi R, Sultana S, Sundar S, et al. Population-based surveillance for severe rotavirus gastroenteritis in children in Karachi, Pakistan. Vaccine. 2009;27(Suppl5):F25–30.CrossRef Qazi R, Sultana S, Sundar S, et al. Population-based surveillance for severe rotavirus gastroenteritis in children in Karachi, Pakistan. Vaccine. 2009;27(Suppl5):F25–30.CrossRef
16.
go back to reference Zaman K, Yunus M, Faruque ASG, et al. Surveillance of rotavirus in a rural diarrhoea treatment centre in Bangladesh, 2000–2006. Vaccine. 2009;27(Suppl5):F31–4. Zaman K, Yunus M, Faruque ASG, et al. Surveillance of rotavirus in a rural diarrhoea treatment centre in Bangladesh, 2000–2006. Vaccine. 2009;27(Suppl5):F31–4.
17.
go back to reference Bhandari N, Rongsen-Chandola T, Bavdekar A, et al. Efficacy of a monovalent human-bovine (116E) rotavirus vaccine in Indian infants: a randomised, double-blind, placebo-controlled trial. Lancet. 2014;383(9935):2136–43.CrossRef Bhandari N, Rongsen-Chandola T, Bavdekar A, et al. Efficacy of a monovalent human-bovine (116E) rotavirus vaccine in Indian infants: a randomised, double-blind, placebo-controlled trial. Lancet. 2014;383(9935):2136–43.CrossRef
18.
go back to reference Sarangi R, Rath S, Dash M, Rath B, Lenka RK, Padhy RN. Prevalence of rotaviral diarrhoea in under-five hospitalized children in a tertiary care hospital of Eastern India. Egyptian Pediatric Association Gazette. 2015;63(2). Available at: https://cyberleninka.org/article/n/593646. Accessed 30 Sep 2020. Sarangi R, Rath S, Dash M, Rath B, Lenka RK, Padhy RN. Prevalence of rotaviral diarrhoea in under-five hospitalized children in a tertiary care hospital of Eastern India. Egyptian Pediatric Association Gazette. 2015;63(2). Available at: https://​cyberleninka.​org/​article/​n/​593646. Accessed 30 Sep 2020.
19.
go back to reference Kar S, Pattnaik D, Das SC, Pharveen I. Prospective hospital-based surveillance to estimate the burden of rotavirus gastroenteritis in children less than five years in Bhubaneswar. Clin Epidemiol Glob Health. 2014;2(2):52–5.CrossRef Kar S, Pattnaik D, Das SC, Pharveen I. Prospective hospital-based surveillance to estimate the burden of rotavirus gastroenteritis in children less than five years in Bhubaneswar. Clin Epidemiol Glob Health. 2014;2(2):52–5.CrossRef
20.
go back to reference Shrivastava AK, Reddy NS, Giri S, et al. Burden and molecular epidemiology of rotavirus causing diarrhea among under-five children: a hospital-based study from eastern India. J Glob Infect Dis. 2019;11(4):147–52. Shrivastava AK, Reddy NS, Giri S, et al. Burden and molecular epidemiology of rotavirus causing diarrhea among under-five children: a hospital-based study from eastern India. J Glob Infect Dis. 2019;11(4):147–52.
21.
go back to reference Borade A, Bais AS, Bapat V, Dhongade R. Characteristics of rotavirus gastroenteritis in hospitalized children in Pune. Indian J Med Sci. 2010;64(5):210–8.CrossRef Borade A, Bais AS, Bapat V, Dhongade R. Characteristics of rotavirus gastroenteritis in hospitalized children in Pune. Indian J Med Sci. 2010;64(5):210–8.CrossRef
22.
go back to reference Levy K, Hubbard AE, Eisenberg JNS. Seasonality of rotavirus disease in the tropics: a systematic review and meta-analysis. Int J Epidemiol. 2009;38(6):1487–96.CrossRef Levy K, Hubbard AE, Eisenberg JNS. Seasonality of rotavirus disease in the tropics: a systematic review and meta-analysis. Int J Epidemiol. 2009;38(6):1487–96.CrossRef
23.
go back to reference Patwari AK, Srinivasan A, Diwan N, Aneja S, Anand VK, Peshin S. Rotavirus as an aetiological organism in acute watery diarrhoea in Delhi children: reappraisal of clinical and epidemiological characteristics. J Trop Pediatr. 1994;40(4):214–8.CrossRef Patwari AK, Srinivasan A, Diwan N, Aneja S, Anand VK, Peshin S. Rotavirus as an aetiological organism in acute watery diarrhoea in Delhi children: reappraisal of clinical and epidemiological characteristics. J Trop Pediatr. 1994;40(4):214–8.CrossRef
24.
go back to reference Giri S, Nair NP, Mathew A, et al. Rotavirus gastroenteritis in Indian children < 5 years hospitalized for diarrhoea, 2012 to 2016. BMC Public Health. 2019;19(1):69. Giri S, Nair NP, Mathew A, et al. Rotavirus gastroenteritis in Indian children < 5 years hospitalized for diarrhoea, 2012 to 2016. BMC Public Health. 2019;19(1):69.
Metadata
Title
Genetic Characteristics of Rotavirus Acute Gastroenteritis Among Hospitalized Children of Odisha in Eastern India
Authors
Subal Kumar Pradhan
Sumanta Panigrahi
Pooja Sagar Padhi
Varunkumar Thiyagarajan
Saroj Kumar Satpathy
Publication date
01-03-2021
Publisher
Springer India
Published in
Indian Journal of Pediatrics / Issue Special Issue 1/2021
Print ISSN: 0019-5456
Electronic ISSN: 0973-7693
DOI
https://doi.org/10.1007/s12098-020-03610-7

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