Skip to main content
Top
Published in: BMC Medical Genetics 1/2012

Open Access 01-12-2012 | Research article

A missense founder mutation in VLDLR is associated with Dysequilibrium Syndrome without quadrupedal locomotion

Authors: Bassam R Ali, Jennifer L Silhavy, Matthew J Gleeson, Joseph G Gleeson, Lihadh Al-Gazali

Published in: BMC Medical Genetics | Issue 1/2012

Login to get access

Abstract

Background

Dysequilibrium syndrome is a genetically heterogeneous condition that combines autosomal recessive, nonprogressive cerebellar ataxia with mental retardation. The condition has been classified into cerebellar ataxia, mental retardation and disequilibrium syndrome types 1 (CAMRQ1), 2 (CAMRQ2) and 3 (CAMRQ3) and attributed to mutations in VLDLR, CA8 and WDR81 genes, respectively. Quadrupedal locomotion in this syndrome has been reported in association with mutations in all three genes.

Methods

SNP mapping and candidate gene sequencing in one consanguineous Omani family from the United Arab Emirates with cerebellar hypoplasia, moderate mental retardation, delayed ambulation and truncal ataxia was used to identify the mutation. In a second unrelated consanguineous Omani family, massively parallel exonic sequencing was used.

Results

We identified a homozygous missense mutation (c.2117 G > T, p.C706F) in the VLDLR gene in both families on a shared affected haplotype block.This is the first reported homozygous missense mutation in VLDLR and it occurs in a highly conserved residue and predicted to be damaging to protein function.

Conclusions

We have delineated the phenotype associated with dysequilibrium syndrome in two Omani families and identified the first homozygous missense pathogenic mutation in VLDLR gene with likely founder effect in the southeastern part of the Arabian Peninsula.
Appendix
Available only for authorised users
Literature
1.
go back to reference Rasmussen F, Gustavson K-H, Sara VR, Floderus Y: The dysequilibrium syndrome: a study of the etiology and pathogenesis. Clin Genet. 1985, 27: 191-195.CrossRefPubMed Rasmussen F, Gustavson K-H, Sara VR, Floderus Y: The dysequilibrium syndrome: a study of the etiology and pathogenesis. Clin Genet. 1985, 27: 191-195.CrossRefPubMed
2.
go back to reference Schurig V, Orman AV, Bowen P: Nonprogressive cerebellar disorder with mental retardation and autosomal recessive inheritance in Hutterites. Am J Med Genet. 1981, 9: 43-53. 10.1002/ajmg.1320090109.CrossRefPubMed Schurig V, Orman AV, Bowen P: Nonprogressive cerebellar disorder with mental retardation and autosomal recessive inheritance in Hutterites. Am J Med Genet. 1981, 9: 43-53. 10.1002/ajmg.1320090109.CrossRefPubMed
3.
go back to reference Glass HC, Boycott KM, Adams C, Barlow K, Scott JN, Chudley AE, Fujiwara TM, Morgan K, Wirrell E, McLeod DR: Autosomal recessive cerebellar hypoplasia in the Hutterite population. Dev Med Child Neurol. 2005, 47: 691-695. 10.1017/S0012162205001404.CrossRefPubMed Glass HC, Boycott KM, Adams C, Barlow K, Scott JN, Chudley AE, Fujiwara TM, Morgan K, Wirrell E, McLeod DR: Autosomal recessive cerebellar hypoplasia in the Hutterite population. Dev Med Child Neurol. 2005, 47: 691-695. 10.1017/S0012162205001404.CrossRefPubMed
4.
go back to reference Boycott KM, Flavelle S, Bureau A, Glass HC, Fujiwara TM, Wirrell E, Davey K, Chudley AE, Scott JN, McLeod DR, Parboosingh JS: Homozygous deletion of the very low density lipoprotein receptor gene causes autosomal recessive cerebellar hypoplasia with cerebral gyral simplification. Am J Hum Genet. 2005, 77: 477-483. 10.1086/444400.CrossRefPubMedPubMedCentral Boycott KM, Flavelle S, Bureau A, Glass HC, Fujiwara TM, Wirrell E, Davey K, Chudley AE, Scott JN, McLeod DR, Parboosingh JS: Homozygous deletion of the very low density lipoprotein receptor gene causes autosomal recessive cerebellar hypoplasia with cerebral gyral simplification. Am J Hum Genet. 2005, 77: 477-483. 10.1086/444400.CrossRefPubMedPubMedCentral
5.
go back to reference Ozcelik T, Akarsu N, Uz E, Caglayan S, Gulsuner S, Onat OE, Tan M, Tan U: Mutations in the very low-density lipoprotein receptor VLDLR cause cerebellar hypoplasia and quadrupedal locomotion in humans. Proc Natl Acad Sci. 2008, 105: 4232-4236. 10.1073/pnas.0710010105.CrossRefPubMedPubMedCentral Ozcelik T, Akarsu N, Uz E, Caglayan S, Gulsuner S, Onat OE, Tan M, Tan U: Mutations in the very low-density lipoprotein receptor VLDLR cause cerebellar hypoplasia and quadrupedal locomotion in humans. Proc Natl Acad Sci. 2008, 105: 4232-4236. 10.1073/pnas.0710010105.CrossRefPubMedPubMedCentral
6.
go back to reference Türkmen S, Hoffmann K, Demirhan O, Aruoba D, Humphrey N, Mundlos S: Cerebellar hypoplasia, with quadrupedal locomotion, caused by mutations in the very low-density lipoprotein receptor gene. Eur J Hum Genet. 2008, 16: 1070-1074. 10.1038/ejhg.2008.73.CrossRefPubMed Türkmen S, Hoffmann K, Demirhan O, Aruoba D, Humphrey N, Mundlos S: Cerebellar hypoplasia, with quadrupedal locomotion, caused by mutations in the very low-density lipoprotein receptor gene. Eur J Hum Genet. 2008, 16: 1070-1074. 10.1038/ejhg.2008.73.CrossRefPubMed
7.
go back to reference Gulsuner S, Tekinay AB, Doerschner K, Boyaci H, Bilguvar K, Unal H, Ors A, Onat OE, Atalar E, Basak AN, Topaloglu H, Kansu T, Tan M, Tan U, Gunel M, Ozcelik T: Homozygosity mapping and targeted genomic sequencing reveal the gene responsible for cerebellar hypoplasia and quadrupedal locomotion in a consanguineous kindred. Genome Res. 2011, 21: 1995-2003. 10.1101/gr.126110.111.CrossRefPubMedPubMedCentral Gulsuner S, Tekinay AB, Doerschner K, Boyaci H, Bilguvar K, Unal H, Ors A, Onat OE, Atalar E, Basak AN, Topaloglu H, Kansu T, Tan M, Tan U, Gunel M, Ozcelik T: Homozygosity mapping and targeted genomic sequencing reveal the gene responsible for cerebellar hypoplasia and quadrupedal locomotion in a consanguineous kindred. Genome Res. 2011, 21: 1995-2003. 10.1101/gr.126110.111.CrossRefPubMedPubMedCentral
8.
go back to reference Moheb LA, Tzschach A, Garshasbi M, Kahrizi K, Darvish H, Heshmati Y, Kordi A, Najmabadi H, Ropers HH, Kuss AW: Identification of a nonsense mutation in the very low-density lipoprotein receptor gene (VLDLR) in an Iranian family with dysequilibrium syndrome. Eur J Hum Genet. 2008, 16: 270-273. 10.1038/sj.ejhg.5201967.CrossRefPubMed Moheb LA, Tzschach A, Garshasbi M, Kahrizi K, Darvish H, Heshmati Y, Kordi A, Najmabadi H, Ropers HH, Kuss AW: Identification of a nonsense mutation in the very low-density lipoprotein receptor gene (VLDLR) in an Iranian family with dysequilibrium syndrome. Eur J Hum Genet. 2008, 16: 270-273. 10.1038/sj.ejhg.5201967.CrossRefPubMed
9.
go back to reference Boycott KM, Bonnemann C, Herz J, Neuert S, Beaulieu C, Scott JN, Venkatasubramanian A, Parboosingh JS: Mutations in VLDLR as a cause for autosomal recessive cerebellar ataxia with mental retardation (dysequilibrium syndrome). J Child Neurol. 2009, 24: 1310-1315. 10.1177/0883073809332696.CrossRefPubMedPubMedCentral Boycott KM, Bonnemann C, Herz J, Neuert S, Beaulieu C, Scott JN, Venkatasubramanian A, Parboosingh JS: Mutations in VLDLR as a cause for autosomal recessive cerebellar ataxia with mental retardation (dysequilibrium syndrome). J Child Neurol. 2009, 24: 1310-1315. 10.1177/0883073809332696.CrossRefPubMedPubMedCentral
10.
go back to reference Türkmen S, Guo G, Garshasbi M, Hoffmann K, Alshalah AJ, Mischung C, Kuss A, Humphrey N, Mundlos S, Robinson PN: CA8 mutations cause a novel syndrome characterized by ataxia and mild mental retardation with predisposition to quadrupedal gait. PLoS Genet. 2009, 5 (5): e1000487-10.1371/journal.pgen.1000487.CrossRefPubMedPubMedCentral Türkmen S, Guo G, Garshasbi M, Hoffmann K, Alshalah AJ, Mischung C, Kuss A, Humphrey N, Mundlos S, Robinson PN: CA8 mutations cause a novel syndrome characterized by ataxia and mild mental retardation with predisposition to quadrupedal gait. PLoS Genet. 2009, 5 (5): e1000487-10.1371/journal.pgen.1000487.CrossRefPubMedPubMedCentral
11.
go back to reference Kaya N, Aldhalaan H, Al-Younes B, Colak D, Shuaib T, Al-Mohaileb F, Al-Sugair A, Nester M, Al-Yamani S, Al-Bakheet A, Al-Hashmi N, Al-Sayed M, Meyer B, Jungbluth H, Al-Owain M: Phenotypical spectrum of cerebellar ataxia associated with a novel mutation in the CA8 gene, encoding carbonic anhydrase (CA) VIII. Am J Med Genet Part B. 2011, 156: 826-834. 10.1002/ajmg.b.31227.CrossRef Kaya N, Aldhalaan H, Al-Younes B, Colak D, Shuaib T, Al-Mohaileb F, Al-Sugair A, Nester M, Al-Yamani S, Al-Bakheet A, Al-Hashmi N, Al-Sayed M, Meyer B, Jungbluth H, Al-Owain M: Phenotypical spectrum of cerebellar ataxia associated with a novel mutation in the CA8 gene, encoding carbonic anhydrase (CA) VIII. Am J Med Genet Part B. 2011, 156: 826-834. 10.1002/ajmg.b.31227.CrossRef
12.
go back to reference Steinlin M: Non-progressive congenital ataxias. Brain Dev. 1998, 20: 199-208. 10.1016/S0387-7604(98)00019-9.CrossRefPubMed Steinlin M: Non-progressive congenital ataxias. Brain Dev. 1998, 20: 199-208. 10.1016/S0387-7604(98)00019-9.CrossRefPubMed
13.
go back to reference Kolb LE, Arlier Z, Yalcinkaya C, Ozturk AK, Moliterno JA, Erturk O, Bayrakli F, Korkmaz B, DiLuna ML, Yasuno K, Bilguvar K, Ozcelik T, Tuysuz B, State MW, Gunel M: Novel VLDLR microdeletion identified in two Turkish siblings with pachygyria and pontocerebellar atrophy. Neurogenetics. 2010, 11: 319-325. 10.1007/s10048-009-0232-y.CrossRefPubMed Kolb LE, Arlier Z, Yalcinkaya C, Ozturk AK, Moliterno JA, Erturk O, Bayrakli F, Korkmaz B, DiLuna ML, Yasuno K, Bilguvar K, Ozcelik T, Tuysuz B, State MW, Gunel M: Novel VLDLR microdeletion identified in two Turkish siblings with pachygyria and pontocerebellar atrophy. Neurogenetics. 2010, 11: 319-325. 10.1007/s10048-009-0232-y.CrossRefPubMed
14.
go back to reference May P, Woldt E, Matz RL, Boucher P: The LDL receptor-related protein (LRP) family: an old family of proteins with new physiological functions. Ann Med. 2007, 39: 219-228. 10.1080/07853890701214881.CrossRefPubMed May P, Woldt E, Matz RL, Boucher P: The LDL receptor-related protein (LRP) family: an old family of proteins with new physiological functions. Ann Med. 2007, 39: 219-228. 10.1080/07853890701214881.CrossRefPubMed
15.
go back to reference Hussain MM, Strickland DK, Bakillah A: The mammalian low-density lipoprotein receptor family. Annu Rev Nutr. 1999, 19: 141-172. 10.1146/annurev.nutr.19.1.141.CrossRefPubMed Hussain MM, Strickland DK, Bakillah A: The mammalian low-density lipoprotein receptor family. Annu Rev Nutr. 1999, 19: 141-172. 10.1146/annurev.nutr.19.1.141.CrossRefPubMed
16.
go back to reference Trommsdorff M, Gotthardt M, Hiesberger T, Shelton J, Stockinger W, Nimpf J, Hammer RE, Richardson JA, Herz J: Reeler/Disabled-like disruption of neuronal migration in knockout mice lacking the VLDL receptor and ApoE receptor 2. Cell. 1999, 97: 689-701. 10.1016/S0092-8674(00)80782-5.CrossRefPubMed Trommsdorff M, Gotthardt M, Hiesberger T, Shelton J, Stockinger W, Nimpf J, Hammer RE, Richardson JA, Herz J: Reeler/Disabled-like disruption of neuronal migration in knockout mice lacking the VLDL receptor and ApoE receptor 2. Cell. 1999, 97: 689-701. 10.1016/S0092-8674(00)80782-5.CrossRefPubMed
17.
go back to reference Tissir F, Goffinet AM: Reelin and brain development. Nat Rev Neurosci. 2003, 4: 496-505. 10.1038/nrn1113.CrossRefPubMed Tissir F, Goffinet AM: Reelin and brain development. Nat Rev Neurosci. 2003, 4: 496-505. 10.1038/nrn1113.CrossRefPubMed
18.
go back to reference Murray SS, Oliphant A, Shen R, McBride C, Steeke RJ, Shannon SG, Rubano T, Kermani BG, Fan JB, Chee MS, Hansen MS: A highly informative SNP linkage panel for human genetic studies. Nat Methods. 2004, 1: 113-117. 10.1038/nmeth712.CrossRefPubMed Murray SS, Oliphant A, Shen R, McBride C, Steeke RJ, Shannon SG, Rubano T, Kermani BG, Fan JB, Chee MS, Hansen MS: A highly informative SNP linkage panel for human genetic studies. Nat Methods. 2004, 1: 113-117. 10.1038/nmeth712.CrossRefPubMed
19.
go back to reference Hoffmann K: Lindner TH: easyLINKAGE-Plus–automated linkage analyses using large-scale SNP data. Bioinformatics. 2005, 21: 3565-3567. 10.1093/bioinformatics/bti571.CrossRefPubMed Hoffmann K: Lindner TH: easyLINKAGE-Plus–automated linkage analyses using large-scale SNP data. Bioinformatics. 2005, 21: 3565-3567. 10.1093/bioinformatics/bti571.CrossRefPubMed
20.
go back to reference DePristo MA, Banks E, Poplin R, Garimella KV, Maguire JR, Hartl C, Philippakis AA, del Angel G, Rivas MA, Hanna M, McKenna A, Fennell TJ, Kernytsky AM, Sivachenko AY, Cibulskis K, Gabriel SB, Altshuler D, Daly MJ: A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat Genet. 2011, 43: 491-498. 10.1038/ng.806.CrossRefPubMedPubMedCentral DePristo MA, Banks E, Poplin R, Garimella KV, Maguire JR, Hartl C, Philippakis AA, del Angel G, Rivas MA, Hanna M, McKenna A, Fennell TJ, Kernytsky AM, Sivachenko AY, Cibulskis K, Gabriel SB, Altshuler D, Daly MJ: A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat Genet. 2011, 43: 491-498. 10.1038/ng.806.CrossRefPubMedPubMedCentral
21.
go back to reference Seelow D, Schuelke M, Hildebrandt F, Nürnberg P: HomozygosityMapper--an interactive approach to homozygosity mapping. Nucleic Acids Res. 2009, 37: W593-W599. 10.1093/nar/gkp369. Web Server issue)CrossRefPubMedPubMedCentral Seelow D, Schuelke M, Hildebrandt F, Nürnberg P: HomozygosityMapper--an interactive approach to homozygosity mapping. Nucleic Acids Res. 2009, 37: W593-W599. 10.1093/nar/gkp369. Web Server issue)CrossRefPubMedPubMedCentral
22.
go back to reference Grantham R: Amino acid difference formula to help explain protein evolution. Science. 1974, 185: 862-864. 10.1126/science.185.4154.862.CrossRefPubMed Grantham R: Amino acid difference formula to help explain protein evolution. Science. 1974, 185: 862-864. 10.1126/science.185.4154.862.CrossRefPubMed
23.
go back to reference Siepel A, Bejerano G, Pedersen JS, Hinrichs AS, Hou M, Rosenbloom K, Clawson H, Spieth J, Hillier LW, Richards S, Weinstock GM, Wilson RK, Gibbs RA, Kent WJ, Miller W, Haussler D: Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Res. 2005, 15: 1034-1050. 10.1101/gr.3715005.CrossRefPubMedPubMedCentral Siepel A, Bejerano G, Pedersen JS, Hinrichs AS, Hou M, Rosenbloom K, Clawson H, Spieth J, Hillier LW, Richards S, Weinstock GM, Wilson RK, Gibbs RA, Kent WJ, Miller W, Haussler D: Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Res. 2005, 15: 1034-1050. 10.1101/gr.3715005.CrossRefPubMedPubMedCentral
24.
go back to reference Adzhubei IA, Schmidt S, Peshkin L, Ramensky VE, Gerasimova A, Bork P, Kondrashov AS, Sunyaev S: A method and server for predicting damaging missense mutations. Nat Methods. 2010, 7: 248-249. 10.1038/nmeth0410-248.CrossRefPubMedPubMedCentral Adzhubei IA, Schmidt S, Peshkin L, Ramensky VE, Gerasimova A, Bork P, Kondrashov AS, Sunyaev S: A method and server for predicting damaging missense mutations. Nat Methods. 2010, 7: 248-249. 10.1038/nmeth0410-248.CrossRefPubMedPubMedCentral
25.
go back to reference Chen Y, Bellamy WP, Seabra MC, Field MC, Ali BR: ER-associated protein degradation is a common mechanism underpinning numerous monogenic diseases including Robinow syndrome. Hum Mol Genet. 2005, 14: 2559-2569. 10.1093/hmg/ddi259.CrossRefPubMed Chen Y, Bellamy WP, Seabra MC, Field MC, Ali BR: ER-associated protein degradation is a common mechanism underpinning numerous monogenic diseases including Robinow syndrome. Hum Mol Genet. 2005, 14: 2559-2569. 10.1093/hmg/ddi259.CrossRefPubMed
26.
go back to reference Aridor M: Visiting the ER: the endoplasmic reticulum as a target for therapeutics in traffic related diseases. Adv Drug Deliv Rev. 2007, 59: 759-781. 10.1016/j.addr.2007.06.002.CrossRefPubMed Aridor M: Visiting the ER: the endoplasmic reticulum as a target for therapeutics in traffic related diseases. Adv Drug Deliv Rev. 2007, 59: 759-781. 10.1016/j.addr.2007.06.002.CrossRefPubMed
27.
go back to reference Gent J, Braakman I: Low-density lipoprotein receptor structure and folding. Cell Mol Life Sci. 2004, 61: 2461-2470. 10.1007/s00018-004-4090-3.CrossRefPubMed Gent J, Braakman I: Low-density lipoprotein receptor structure and folding. Cell Mol Life Sci. 2004, 61: 2461-2470. 10.1007/s00018-004-4090-3.CrossRefPubMed
29.
30.
go back to reference Ozcelik T, Akarsu N, Uz E, Caglayan S, Gulsuner S, Onat OE, Tan M, Tan U: Reply to Herz et al. and Humphrey et al.: Genetic heterogeneity of cerebellar hypoplasia with quadrupedal locomotion (Letter). Proc Nat Acad Sci. 2008, 105: E32-E33. 10.1073/pnas.0804078105.CrossRefPubMedPubMedCentral Ozcelik T, Akarsu N, Uz E, Caglayan S, Gulsuner S, Onat OE, Tan M, Tan U: Reply to Herz et al. and Humphrey et al.: Genetic heterogeneity of cerebellar hypoplasia with quadrupedal locomotion (Letter). Proc Nat Acad Sci. 2008, 105: E32-E33. 10.1073/pnas.0804078105.CrossRefPubMedPubMedCentral
Metadata
Title
A missense founder mutation in VLDLR is associated with Dysequilibrium Syndrome without quadrupedal locomotion
Authors
Bassam R Ali
Jennifer L Silhavy
Matthew J Gleeson
Joseph G Gleeson
Lihadh Al-Gazali
Publication date
01-12-2012
Publisher
BioMed Central
Published in
BMC Medical Genetics / Issue 1/2012
Electronic ISSN: 1471-2350
DOI
https://doi.org/10.1186/1471-2350-13-80

Other articles of this Issue 1/2012

BMC Medical Genetics 1/2012 Go to the issue