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Published in: BMC Medical Genetics 1/2015

Open Access 01-12-2015 | Research article

A large Indian family with rearrangement of chromosome 4p16 and 3p26.3 and divergent clinical presentations

Authors: Thomas Iype, Vafa Alakbarzade, Mary Iype, Royana Singh, Ajith Sreekantan-Nair, Barry A. Chioza, Tribhuvan M. Mohapatra, Emma L. Baple, Michael A. Patton, Thomas T. Warner, Christos Proukakis, Abhi Kulkarni, Andrew H. Crosby

Published in: BMC Medical Genetics | Issue 1/2015

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Abstract

Background

The deletion of the chromosome 4p16.3 Wolf-Hirschhorn syndrome critical region (WHSCR-2) typically results in a characteristic facial appearance, varying intellectual disability, stereotypies and prenatal onset of growth retardation, while gains of the same chromosomal region result in a more variable degree of intellectual deficit and dysmorphism. Similarly the phenotype of individuals with terminal deletions of distal chromosome 3p (3p deletion syndrome) varies from mild to severe intellectual deficit, micro- and trigonocephaly, and a distinct facial appearance.

Methods and results

We investigated a large Indian five-generation pedigree with ten affected family members in which chromosomal microarray and fluorescence in situ hybridization analyses disclosed a complex rearrangement involving chromosomal subregions 4p16.1 and 3p26.3 resulting in a 4p16.1 deletion and 3p26.3 microduplication in three individuals, and a 4p16.1 duplication and 3p26.3 microdeletion in seven individuals. A typical clinical presentation of WHS was observed in all three cases with 4p16.1 deletion and 3p26.3 microduplication. Individuals with a 4p16.1 duplication and 3p26.3 microdeletion demonstrated a range of clinical features including typical 3p microdeletion or 4p partial trisomy syndrome to more severe neurodevelopmental delay with distinct dysmorphic features.

Conclusion

We present the largest pedigree with complex t(4p;3p) chromosomal rearrangements and diverse clinical outcomes including Wolf Hirschorn-, 3p deletion-, and 4p duplication syndrome amongst affected individuals.
Appendix
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Literature
1.
go back to reference Battaglia A, Carey JC, Viskochil DH, Cederholm P, Opitz JM. Wolf-Hirschhorn syndrome (WHS): a history in pictures. Clin Dysmorphol. 2000;9(1):25–30.CrossRefPubMed Battaglia A, Carey JC, Viskochil DH, Cederholm P, Opitz JM. Wolf-Hirschhorn syndrome (WHS): a history in pictures. Clin Dysmorphol. 2000;9(1):25–30.CrossRefPubMed
2.
go back to reference Patel SV, Dagnew H, Parekh AJ, Koenig E, Conte RA, Macera MJ, et al. Clinical manifestations of trisomy 4p syndrome. Eur J Pediatr. 1995;154(6):425–31.CrossRefPubMed Patel SV, Dagnew H, Parekh AJ, Koenig E, Conte RA, Macera MJ, et al. Clinical manifestations of trisomy 4p syndrome. Eur J Pediatr. 1995;154(6):425–31.CrossRefPubMed
3.
go back to reference Partington MW, Fagan K, Soubjaki V, Turner G. Translocations involving 4p16.3 in three families: deletion causing the Pitt-Rogers-Danks syndrome and duplication resulting in a new overgrowth syndrome. J Med Genet. 1997;34(9):719–28.PubMedCentralCrossRefPubMed Partington MW, Fagan K, Soubjaki V, Turner G. Translocations involving 4p16.3 in three families: deletion causing the Pitt-Rogers-Danks syndrome and duplication resulting in a new overgrowth syndrome. J Med Genet. 1997;34(9):719–28.PubMedCentralCrossRefPubMed
4.
go back to reference Schonewolf-Greulich B, Ravn K, Hamborg-Petersen B, Brondum-Nielsen K, Tumer Z. Segregation of a 4p16.3 duplication with a characteristic appearance, macrocephaly, speech delay and mild intellectual disability in a 3-generation family. Am J Med Genet A. 2013;161(9):2358–62.CrossRef Schonewolf-Greulich B, Ravn K, Hamborg-Petersen B, Brondum-Nielsen K, Tumer Z. Segregation of a 4p16.3 duplication with a characteristic appearance, macrocephaly, speech delay and mild intellectual disability in a 3-generation family. Am J Med Genet A. 2013;161(9):2358–62.CrossRef
5.
go back to reference Battaglia A, Carey JC, Wright TJ. Wolf-Hirschhorn (4p-) syndrome. Adv Pediatr. 2001;48:75–113.PubMed Battaglia A, Carey JC, Wright TJ. Wolf-Hirschhorn (4p-) syndrome. Adv Pediatr. 2001;48:75–113.PubMed
6.
go back to reference Gonzalez CH, Sommer A, Meisner LF, Elejalde BR, Opitz JM. The trisomy 4p syndrome: case report and review. Am J Med Genet. 1977;1(2):137–56.CrossRefPubMed Gonzalez CH, Sommer A, Meisner LF, Elejalde BR, Opitz JM. The trisomy 4p syndrome: case report and review. Am J Med Genet. 1977;1(2):137–56.CrossRefPubMed
7.
go back to reference Schinzel A, Hanson JW, Pagon RA, Hoehn H, Smith DW. Trisomy 3 (p23-pter) resulting from maternal translocation, t (3; 4)(p23; q35). Ann Genet. 1978;21(3):168–71.PubMed Schinzel A, Hanson JW, Pagon RA, Hoehn H, Smith DW. Trisomy 3 (p23-pter) resulting from maternal translocation, t (3; 4)(p23; q35). Ann Genet. 1978;21(3):168–71.PubMed
8.
go back to reference Petriczko E, Biczysko-Mokosa A, Bogdanowicz J, Constantinou M, Zdziennicka E, Horodnicka-Jozwa A, et al. Familial distal monosomy 3p26.3-pter with trisomy 4q32.2-qter, presenting with progressive ataxia, intellectual disability, and dysmorphic features. Am J Med Genet A. 2012;158a(6):1442–6.CrossRefPubMed Petriczko E, Biczysko-Mokosa A, Bogdanowicz J, Constantinou M, Zdziennicka E, Horodnicka-Jozwa A, et al. Familial distal monosomy 3p26.3-pter with trisomy 4q32.2-qter, presenting with progressive ataxia, intellectual disability, and dysmorphic features. Am J Med Genet A. 2012;158a(6):1442–6.CrossRefPubMed
9.
go back to reference Grossmann V, Muller D, Muller W, Fresser F, Erdel M, Janecke AR, et al. “Essentially” pure trisomy 3q27 -> qter: further delineation of the partial trisomy 3q phenotype. Am J Med Genet A. 2009;149a(11):2522–6.CrossRefPubMed Grossmann V, Muller D, Muller W, Fresser F, Erdel M, Janecke AR, et al. “Essentially” pure trisomy 3q27 -> qter: further delineation of the partial trisomy 3q phenotype. Am J Med Genet A. 2009;149a(11):2522–6.CrossRefPubMed
10.
11.
go back to reference Cargile CB, Goh DL, Goodman BK, Chen XN, Korenberg JR, Semenza GL, et al. Molecular cytogenetic characterization of a subtle interstitial del(3)(p25.3p26.2) in a patient with deletion 3p syndrome. Am J Med Genet. 2002;109(2):133–8.CrossRefPubMed Cargile CB, Goh DL, Goodman BK, Chen XN, Korenberg JR, Semenza GL, et al. Molecular cytogenetic characterization of a subtle interstitial del(3)(p25.3p26.2) in a patient with deletion 3p syndrome. Am J Med Genet. 2002;109(2):133–8.CrossRefPubMed
12.
go back to reference Malmgren H, Sahlen S, Wide K, Lundvall M, Blennow E. Distal 3p deletion syndrome: detailed molecular cytogenetic and clinical characterization of three small distal deletions and review. Am J Med Genet A. 2007;143a(18):2143–9.CrossRefPubMed Malmgren H, Sahlen S, Wide K, Lundvall M, Blennow E. Distal 3p deletion syndrome: detailed molecular cytogenetic and clinical characterization of three small distal deletions and review. Am J Med Genet A. 2007;143a(18):2143–9.CrossRefPubMed
13.
go back to reference Zollino M, Murdolo M, Marangi G, Pecile V, Galasso C, Mazzanti L, et al. On the nosology and pathogenesis of Wolf-Hirschhorn syndrome: genotype-phenotype correlation analysis of 80 patients and literature review. Am J Med Genet C: Semin Med Genet. 2008;148C(4):257–69.CrossRef Zollino M, Murdolo M, Marangi G, Pecile V, Galasso C, Mazzanti L, et al. On the nosology and pathogenesis of Wolf-Hirschhorn syndrome: genotype-phenotype correlation analysis of 80 patients and literature review. Am J Med Genet C: Semin Med Genet. 2008;148C(4):257–69.CrossRef
14.
go back to reference Verbrugge J, Choudhary AK, Ladda R. Tethered cord, corpus callosum abnormalities, and periventricular cysts in Wolf-Hirschhorn syndrome. Report of two cases and review of the literature. Am J Med Genet A. 2009;149A(10):2280–4.CrossRefPubMed Verbrugge J, Choudhary AK, Ladda R. Tethered cord, corpus callosum abnormalities, and periventricular cysts in Wolf-Hirschhorn syndrome. Report of two cases and review of the literature. Am J Med Genet A. 2009;149A(10):2280–4.CrossRefPubMed
15.
go back to reference Zollino M, Lecce R, Fischetto R, Murdolo M, Faravelli F, Selicorni A, et al. Mapping the Wolf-Hirschhorn syndrome phenotype outside the currently accepted WHS critical region and defining a new critical region, WHSCR-2. Am J Hum Genet. 2003;72(3):590–7.PubMedCentralCrossRefPubMed Zollino M, Lecce R, Fischetto R, Murdolo M, Faravelli F, Selicorni A, et al. Mapping the Wolf-Hirschhorn syndrome phenotype outside the currently accepted WHS critical region and defining a new critical region, WHSCR-2. Am J Hum Genet. 2003;72(3):590–7.PubMedCentralCrossRefPubMed
16.
go back to reference Stec I, Wright TJ, van Ommen GJ, de Boer PA, van Haeringen A, Moorman AF, et al. WHSC1, a 90 kb SET domain-containing gene, expressed in early development and homologous to a Drosophila dysmorphy gene maps in the Wolf-Hirschhorn syndrome critical region and is fused to IgH in t(4;14) multiple myeloma. Hum Mol Genet. 1998;7(7):1071–82.CrossRefPubMed Stec I, Wright TJ, van Ommen GJ, de Boer PA, van Haeringen A, Moorman AF, et al. WHSC1, a 90 kb SET domain-containing gene, expressed in early development and homologous to a Drosophila dysmorphy gene maps in the Wolf-Hirschhorn syndrome critical region and is fused to IgH in t(4;14) multiple myeloma. Hum Mol Genet. 1998;7(7):1071–82.CrossRefPubMed
17.
go back to reference Wright TJ, Costa JL, Naranjo C, Francis-West P, Altherr MR. Comparative analysis of a novel gene from the Wolf-Hirschhorn/Pitt-Rogers-Danks syndrome critical region. Genomics. 1999;59(2):203–12.CrossRefPubMed Wright TJ, Costa JL, Naranjo C, Francis-West P, Altherr MR. Comparative analysis of a novel gene from the Wolf-Hirschhorn/Pitt-Rogers-Danks syndrome critical region. Genomics. 1999;59(2):203–12.CrossRefPubMed
18.
go back to reference Wright TJ, Ricke DO, Denison K, Abmayr S, Cotter PD, Hirschhorn K, et al. A transcript map of the newly defined 165 kb Wolf-Hirschhorn syndrome critical region. Hum Mol Genet. 1997;6(2):317–24.CrossRefPubMed Wright TJ, Ricke DO, Denison K, Abmayr S, Cotter PD, Hirschhorn K, et al. A transcript map of the newly defined 165 kb Wolf-Hirschhorn syndrome critical region. Hum Mol Genet. 1997;6(2):317–24.CrossRefPubMed
19.
go back to reference Rodriguez L, Zollino M, Climent S, Mansilla E, Lopez-Grondona F, Martinez-Fernandez ML, et al. The new Wolf-Hirschhorn syndrome critical region (WHSCR-2): a description of a second case. Am J Med Genet A. 2005;136(2):175–8.CrossRefPubMed Rodriguez L, Zollino M, Climent S, Mansilla E, Lopez-Grondona F, Martinez-Fernandez ML, et al. The new Wolf-Hirschhorn syndrome critical region (WHSCR-2): a description of a second case. Am J Med Genet A. 2005;136(2):175–8.CrossRefPubMed
20.
go back to reference Nowikovsky K, Froschauer EM, Zsurka G, Samaj J, Reipert S, Kolisek M, et al. The LETM1/YOL027 gene family encodes a factor of the mitochondrial K+ homeostasis with a potential role in the Wolf-Hirschhorn syndrome. J Biol Chem. 2004;279(29):30307–15.CrossRefPubMed Nowikovsky K, Froschauer EM, Zsurka G, Samaj J, Reipert S, Kolisek M, et al. The LETM1/YOL027 gene family encodes a factor of the mitochondrial K+ homeostasis with a potential role in the Wolf-Hirschhorn syndrome. J Biol Chem. 2004;279(29):30307–15.CrossRefPubMed
21.
go back to reference Schlickum S, Moghekar A, Simpson JC, Steglich C, O’Brien RJ, Winterpacht A, et al. LETM1, a gene deleted in Wolf-Hirschhorn syndrome, encodes an evolutionarily conserved mitochondrial protein. Genomics. 2004;83(2):254–61.CrossRefPubMed Schlickum S, Moghekar A, Simpson JC, Steglich C, O’Brien RJ, Winterpacht A, et al. LETM1, a gene deleted in Wolf-Hirschhorn syndrome, encodes an evolutionarily conserved mitochondrial protein. Genomics. 2004;83(2):254–61.CrossRefPubMed
22.
go back to reference Frazier AE, Taylor RD, Mick DU, Warscheid B, Stoepel N, Meyer HE, et al. Mdm38 interacts with ribosomes and is a component of the mitochondrial protein export machinery. J Cell Biol. 2006;172(4):553–64.PubMedCentralCrossRefPubMed Frazier AE, Taylor RD, Mick DU, Warscheid B, Stoepel N, Meyer HE, et al. Mdm38 interacts with ribosomes and is a component of the mitochondrial protein export machinery. J Cell Biol. 2006;172(4):553–64.PubMedCentralCrossRefPubMed
23.
24.
go back to reference DiMauro S, Kulikova R, Tanji K, Bonilla E, Hirano M. Mitochondrial genes for generalized epilepsies. Adv Neurol. 1999;79:411–9.PubMed DiMauro S, Kulikova R, Tanji K, Bonilla E, Hirano M. Mitochondrial genes for generalized epilepsies. Adv Neurol. 1999;79:411–9.PubMed
25.
go back to reference Zollino M, Orteschi D, Ruiter M, Pfundt R, Steindl K, Cafiero C, et al. Unusual 4p16.3 deletions suggest an additional chromosome region for the Wolf-Hirschhorn syndrome-associated seizures disorder. Epilepsia. 2014;55(6):849–57.CrossRefPubMed Zollino M, Orteschi D, Ruiter M, Pfundt R, Steindl K, Cafiero C, et al. Unusual 4p16.3 deletions suggest an additional chromosome region for the Wolf-Hirschhorn syndrome-associated seizures disorder. Epilepsia. 2014;55(6):849–57.CrossRefPubMed
26.
go back to reference Toydemir RM, Brassington AE, Bayrak-Toydemir P, Krakowiak PA, Jorde LB, Whitby FG, et al. A novel mutation in FGFR3 causes camptodactyly, tall stature, and hearing loss (CATSHL) syndrome. Am J Hum Genet. 2006;79(5):935–41.PubMedCentralCrossRefPubMed Toydemir RM, Brassington AE, Bayrak-Toydemir P, Krakowiak PA, Jorde LB, Whitby FG, et al. A novel mutation in FGFR3 causes camptodactyly, tall stature, and hearing loss (CATSHL) syndrome. Am J Hum Genet. 2006;79(5):935–41.PubMedCentralCrossRefPubMed
27.
go back to reference Nimura K, Ura K, Shiratori H, Ikawa M, Okabe M, Schwartz RJ, et al. A histone H3 lysine 36 trimethyltransferase links Nkx2-5 to Wolf-Hirschhorn syndrome. Nature. 2009;460(7252):287–91.CrossRefPubMed Nimura K, Ura K, Shiratori H, Ikawa M, Okabe M, Schwartz RJ, et al. A histone H3 lysine 36 trimethyltransferase links Nkx2-5 to Wolf-Hirschhorn syndrome. Nature. 2009;460(7252):287–91.CrossRefPubMed
28.
go back to reference Dijkhuizen T, van Essen T, van der Vlies P, Verheij JB, Sikkema-Raddatz B, van der Veen AY, et al. FISH and array-CGH analysis of a complex chromosome 3 aberration suggests that loss of CNTN4 and CRBN contributes to mental retardation in 3pter deletions. Am J Med Genet A. 2006;140(22):2482–7.CrossRefPubMed Dijkhuizen T, van Essen T, van der Vlies P, Verheij JB, Sikkema-Raddatz B, van der Veen AY, et al. FISH and array-CGH analysis of a complex chromosome 3 aberration suggests that loss of CNTN4 and CRBN contributes to mental retardation in 3pter deletions. Am J Med Genet A. 2006;140(22):2482–7.CrossRefPubMed
29.
go back to reference Conte RA, Pitter JH, Verma RS. Molecular characterization of trisomic segment 3p24.1-> 3pter: a case with review of the literature. Clin Genet. 1995;48(1):49–53.CrossRefPubMed Conte RA, Pitter JH, Verma RS. Molecular characterization of trisomic segment 3p24.1-> 3pter: a case with review of the literature. Clin Genet. 1995;48(1):49–53.CrossRefPubMed
30.
go back to reference Kotzot D, Kruger C, Braun-Quentin C. De novo direct duplication 3 (p25-> pter): a previously undescribed chromosomal aberration. Clin Genet. 1996;50(2):96–8.CrossRefPubMed Kotzot D, Kruger C, Braun-Quentin C. De novo direct duplication 3 (p25-> pter): a previously undescribed chromosomal aberration. Clin Genet. 1996;50(2):96–8.CrossRefPubMed
31.
go back to reference Pohjola P, de Leeuw N, Penttinen M, Kaariainen H. Terminal 3p deletions in two families--correlation between molecular karyotype and phenotype. Am J Med Genet A. 2010;152A(2):441–6.CrossRefPubMed Pohjola P, de Leeuw N, Penttinen M, Kaariainen H. Terminal 3p deletions in two families--correlation between molecular karyotype and phenotype. Am J Med Genet A. 2010;152A(2):441–6.CrossRefPubMed
32.
go back to reference Frints SG, Marynen P, Hartmann D, Fryns JP, Steyaert J, Schachner M, et al. CALL interrupted in a patient with non-specific mental retardation: gene dosage-dependent alteration of murine brain development and behavior. Hum Mol Genet. 2003;12(13):1463–74.CrossRefPubMed Frints SG, Marynen P, Hartmann D, Fryns JP, Steyaert J, Schachner M, et al. CALL interrupted in a patient with non-specific mental retardation: gene dosage-dependent alteration of murine brain development and behavior. Hum Mol Genet. 2003;12(13):1463–74.CrossRefPubMed
33.
go back to reference Shrimpton AE, Jensen KA, Hoo JJ. Karyotype-phenotype analysis and molecular delineation of a 3p26 deletion/8q24.3 duplication case with a virtually normal phenotype and mild cognitive deficit. Am J Med Genet A. 2006;140(4):388–91.CrossRefPubMed Shrimpton AE, Jensen KA, Hoo JJ. Karyotype-phenotype analysis and molecular delineation of a 3p26 deletion/8q24.3 duplication case with a virtually normal phenotype and mild cognitive deficit. Am J Med Genet A. 2006;140(4):388–91.CrossRefPubMed
Metadata
Title
A large Indian family with rearrangement of chromosome 4p16 and 3p26.3 and divergent clinical presentations
Authors
Thomas Iype
Vafa Alakbarzade
Mary Iype
Royana Singh
Ajith Sreekantan-Nair
Barry A. Chioza
Tribhuvan M. Mohapatra
Emma L. Baple
Michael A. Patton
Thomas T. Warner
Christos Proukakis
Abhi Kulkarni
Andrew H. Crosby
Publication date
01-12-2015
Publisher
BioMed Central
Published in
BMC Medical Genetics / Issue 1/2015
Electronic ISSN: 1471-2350
DOI
https://doi.org/10.1186/s12881-015-0251-5

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