Skip to main content
Top
Published in: International Journal of Legal Medicine 1/2011

01-01-2011 | Short Communication

A hypervariable STR polymorphism in the complement factor I (CFI) gene: Asian-specific alleles

Authors: Isao Yuasa, Yoshito Irizawa, Hiroaki Nishimukai, Yasuo Fukumori, Kazuo Umetsu, Nori Nakayashiki, Naruya Saitou, Lotte Henke, Jürgen Henke

Published in: International Journal of Legal Medicine | Issue 1/2011

Login to get access

Abstract

In this study, a short tandem repeat (STR) polymorphism in intron 7 of the human complement factor I (CFI) gene was studied in 637 DNA samples obtained from African, German, Thai, and Japanese populations and German and Japanese families. A total of 41 alleles were observed and classified into two groups, L and H, based on size differences. Group H, which consisted of 16 alleles, was observed only in Thai and Japanese populations at frequencies of 0.162 and 0.116, respectively, and was strongly associated with c.1217A in exon 11 (CFI*Ah). The heterozygosity values ranged from 0.89 in German to 0.93 in Thai populations. This STR would be a useful supplementary marker for forensic individualization.
Appendix
Available only for authorised users
Literature
1.
go back to reference Schroeder KB, Schurr TG, Long JC et al (2007) A private allele ubiquitous in the Americas. Biol Lett 3:218–223CrossRefPubMed Schroeder KB, Schurr TG, Long JC et al (2007) A private allele ubiquitous in the Americas. Biol Lett 3:218–223CrossRefPubMed
2.
go back to reference Phillips C, Rodriguez A, Mosquera-Miguel A et al (2009) D9S1120, a simple STR with a common Native American-specific allele: forensic optimization, locus characterization and allele frequency studies. Forens Sci Int Genet 3:7–13CrossRef Phillips C, Rodriguez A, Mosquera-Miguel A et al (2009) D9S1120, a simple STR with a common Native American-specific allele: forensic optimization, locus characterization and allele frequency studies. Forens Sci Int Genet 3:7–13CrossRef
3.
go back to reference Yuasa I, Nakagawa M, Umetsu K et al (2008) Molecular basis of complement factor I (CFI) polymorphism: one of two polymorphic suballeles responsible for CFI A is Japanese-specific. J Hum Genet 53:1016–1021CrossRefPubMed Yuasa I, Nakagawa M, Umetsu K et al (2008) Molecular basis of complement factor I (CFI) polymorphism: one of two polymorphic suballeles responsible for CFI A is Japanese-specific. J Hum Genet 53:1016–1021CrossRefPubMed
4.
go back to reference Bär W, Brinkmann B, Budowle B et al (1997) DNA recommendations. Further report of the DNA Commission of the ISFH regarding the use of short tandem repeat systems. Int J Legal Med 110:175–176CrossRefPubMed Bär W, Brinkmann B, Budowle B et al (1997) DNA recommendations. Further report of the DNA Commission of the ISFH regarding the use of short tandem repeat systems. Int J Legal Med 110:175–176CrossRefPubMed
5.
go back to reference Excoffier L, Laval G, Schneider S (2005) Arlequin ver 3.0: an integrated software package for population genetics data analysis. Evol Bioinform Online 1:47–50PubMed Excoffier L, Laval G, Schneider S (2005) Arlequin ver 3.0: an integrated software package for population genetics data analysis. Evol Bioinform Online 1:47–50PubMed
6.
go back to reference Hartl DL, Clark AG (1997) Principles of population genetics, 3rd edn. Sinauer, Sunderland, MA Hartl DL, Clark AG (1997) Principles of population genetics, 3rd edn. Sinauer, Sunderland, MA
7.
go back to reference Handley LJL, Manica A, Goudet J, Balloux F (2007) Going the distance: human population genetics in a clinal world. Trends Genet 23:432–439CrossRefPubMed Handley LJL, Manica A, Goudet J, Balloux F (2007) Going the distance: human population genetics in a clinal world. Trends Genet 23:432–439CrossRefPubMed
8.
go back to reference Keinan A, Mullikin JC, Patterson N, Reich D (2007) Measurement of the human allele frequency spectrum demonstrates greater genetic drift in East Asians than in Europeans. Nat Genet 39:1251–1255CrossRefPubMed Keinan A, Mullikin JC, Patterson N, Reich D (2007) Measurement of the human allele frequency spectrum demonstrates greater genetic drift in East Asians than in Europeans. Nat Genet 39:1251–1255CrossRefPubMed
9.
go back to reference Griffiths RA, Barber MD, Johnson PE et al (1998) New reference allelic ladders to improve allelic designation in a multiplex STR system. Int J Legal Med 111:267–272CrossRefPubMed Griffiths RA, Barber MD, Johnson PE et al (1998) New reference allelic ladders to improve allelic designation in a multiplex STR system. Int J Legal Med 111:267–272CrossRefPubMed
10.
go back to reference Butler JM et al (2005) Forensic DNA typing. Biology, technology, and genetics of STR markers. Elsevier, Amsterdam Butler JM et al (2005) Forensic DNA typing. Biology, technology, and genetics of STR markers. Elsevier, Amsterdam
11.
go back to reference Montelius K, Karlsson AO, Holmlund G (2008) STR data for the AmpFlSTR Identifiler loci from Swedish population in comparison to European, as well as with non-European population. Forensic Sci Int Genet 2:e49–52CrossRefPubMed Montelius K, Karlsson AO, Holmlund G (2008) STR data for the AmpFlSTR Identifiler loci from Swedish population in comparison to European, as well as with non-European population. Forensic Sci Int Genet 2:e49–52CrossRefPubMed
12.
go back to reference Hohoff C, Schürenkamp M, Brinkmann B (2009) Meiosis study in a population sample from Nigeria: allele frequencies and mutation rates of 16 STR loci. Int J Legal Med 123:259–261 Hohoff C, Schürenkamp M, Brinkmann B (2009) Meiosis study in a population sample from Nigeria: allele frequencies and mutation rates of 16 STR loci. Int J Legal Med 123:259–261
13.
go back to reference Grubwieser P, Zimmermann B, Niederstätter H, Pavlic M, Steinlechner M, Parson W (2007) Evaluation of an extended set of 15 candidate STR loci for paternity and kinship analysis in an Austrian population sample. Int J Legal Med 121:85–89CrossRefPubMed Grubwieser P, Zimmermann B, Niederstätter H, Pavlic M, Steinlechner M, Parson W (2007) Evaluation of an extended set of 15 candidate STR loci for paternity and kinship analysis in an Austrian population sample. Int J Legal Med 121:85–89CrossRefPubMed
14.
go back to reference Hering S, Augustin C, Edelmann J, Heidel M, Chamaon K, Dressler J, Szibor R (2008) Complex variability of intron 40 of the von Willebrand factor (vWF) gene. Int J Legal Med 122:67–71CrossRefPubMed Hering S, Augustin C, Edelmann J, Heidel M, Chamaon K, Dressler J, Szibor R (2008) Complex variability of intron 40 of the von Willebrand factor (vWF) gene. Int J Legal Med 122:67–71CrossRefPubMed
Metadata
Title
A hypervariable STR polymorphism in the complement factor I (CFI) gene: Asian-specific alleles
Authors
Isao Yuasa
Yoshito Irizawa
Hiroaki Nishimukai
Yasuo Fukumori
Kazuo Umetsu
Nori Nakayashiki
Naruya Saitou
Lotte Henke
Jürgen Henke
Publication date
01-01-2011
Publisher
Springer-Verlag
Published in
International Journal of Legal Medicine / Issue 1/2011
Print ISSN: 0937-9827
Electronic ISSN: 1437-1596
DOI
https://doi.org/10.1007/s00414-009-0369-0

Other articles of this Issue 1/2011

International Journal of Legal Medicine 1/2011 Go to the issue