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Published in: Archives of Virology 12/2020

01-12-2020 | Virology Division News

A brief history of the species concept in virology and an opinion on the proposal to introduce Linnaean binomial virus species names

Author: M. H. V. Van Regenmortel

Published in: Archives of Virology | Issue 12/2020

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Abstract

The species concept used in virology is based on the logic of the Linnaean hierarchy, which views a species class as the lowest abstract category that is included in all the higher categories in the classification, such as genera and families. As a result of this class inclusion, the members of a species class are always less numerous than the members of higher classes, which become more numerous as one moves up in the hierarchy. Because species classes always have fewer members than any of the higher classes, logic requires that they need more qualifications for establishing membership than any of the higher classes. This invalidates the claim that a species could be defined by a single property present in all its members. Species were only accepted in virus classification in 1991, because virologists assumed that it would lead to the use of Latin species names, which they rejected. Anglicized binomial species names have been used by virologists for more the 40 years and are popular because they consist of a virus name followed by a genus name that most virologists are familiar with. The ICTV has proposed to introduce a new Latinized virus species binomial nomenclature using the genus name followed by a hard-to-remember Latinized species epithet that bears little resemblance to the name of the virus itself. However, the proposal did not clarify what the advantage is of having to learn hundreds of new unfamiliar virus species names. In 2013, the ICTV changed the definition of a virus species as an abstract class and defined it as a group of physical objects, which induced virologists to believe that a virus species could be defined by a few characteristics of the viral genome. In recent years, thousands of viral sequences have been discovered in metagenomic databases, and the ICTV has suggested that it should be possible to incorporate these sequences in the current ICTV virus classification. Unfortunately, the relational properties of these hypothetical viruses that result from their biological interactions with hosts and vectors remain in the vast majority of cases totally unknown. The absence of this information makes it in fact impossible to incorporate these metagenomic sequences in the current classification of virus species.
Literature
3.
go back to reference Adams MJ, Lefkowitz EJ, King AMQ, Carstens EB (2013) Recently agreed changes to the International Code of Virus Classification and Nomenclature. Arch Virol 158:2633–2639CrossRefPubMed Adams MJ, Lefkowitz EJ, King AMQ, Carstens EB (2013) Recently agreed changes to the International Code of Virus Classification and Nomenclature. Arch Virol 158:2633–2639CrossRefPubMed
4.
go back to reference Simmonds P, Adams MJ, Benkő M et al (2017) Consensus statement: Virus taxonomy in the age of metagenomics. Nat Rev Microbiol 15:161–168CrossRefPubMed Simmonds P, Adams MJ, Benkő M et al (2017) Consensus statement: Virus taxonomy in the age of metagenomics. Nat Rev Microbiol 15:161–168CrossRefPubMed
5.
go back to reference Van Regenmortel MHV (2016) Classes, taxa and categories in hierarchical virus classification: a review of current debates on definitions and names of virus species. Bionomina 10:1–21CrossRef Van Regenmortel MHV (2016) Classes, taxa and categories in hierarchical virus classification: a review of current debates on definitions and names of virus species. Bionomina 10:1–21CrossRef
6.
go back to reference Stamos DN (2003) The species problem. Biological species, ontology and the metaphysics of biology. Lexington Books, Oxford Stamos DN (2003) The species problem. Biological species, ontology and the metaphysics of biology. Lexington Books, Oxford
8.
go back to reference Claridge MF (2010) Species are real biological entities. In: Ayala FJ, Arp R (eds) Contemporary debates in philosophy of biology. Wiley, Chichester, pp 91–109 Claridge MF (2010) Species are real biological entities. In: Ayala FJ, Arp R (eds) Contemporary debates in philosophy of biology. Wiley, Chichester, pp 91–109
9.
go back to reference Mayden RL (1997) A hierarchy of species concepts: the denouement in the saga of the species problem. In: Claridge MF, Dawah HA, Wilson MR (eds) Species: the units of biodiversity. Chapman and Hall, London, pp 381–424 Mayden RL (1997) A hierarchy of species concepts: the denouement in the saga of the species problem. In: Claridge MF, Dawah HA, Wilson MR (eds) Species: the units of biodiversity. Chapman and Hall, London, pp 381–424
10.
go back to reference Milne RG (1984) The species problem in plant virology. Microbiol Sci 1:113–122PubMed Milne RG (1984) The species problem in plant virology. Microbiol Sci 1:113–122PubMed
11.
go back to reference Wildy P (1971) Classification and nomenclature of first report of the international committee on nomenclature of viruses. Monographs in virology, vol 5. Karger, Basel Wildy P (1971) Classification and nomenclature of first report of the international committee on nomenclature of viruses. Monographs in virology, vol 5. Karger, Basel
14.
go back to reference Matthews REF (1985) Viral taxonomy. Microbiol Sciences 2:74–75 Matthews REF (1985) Viral taxonomy. Microbiol Sciences 2:74–75
21.
go back to reference Matthews REF (1971) Plant virology. Academic Press, San Diego Matthews REF (1971) Plant virology. Academic Press, San Diego
22.
go back to reference Brunt A, Crabtree K, Gibbs A (1990) Viruses of tropical plants. CAB International, Wallingford Brunt A, Crabtree K, Gibbs A (1990) Viruses of tropical plants. CAB International, Wallingford
23.
go back to reference Bos L (1999) Plant viruses, unique and intriguing pathogens—a textbook of plant virology. Backhuys Publishers, Leiden Bos L (1999) Plant viruses, unique and intriguing pathogens—a textbook of plant virology. Backhuys Publishers, Leiden
24.
go back to reference Matthews REF (1979) Classification and nomenclature. Third Report of the International Committee on Taxonomy of Viruses. Intervirology 7:1–115 Matthews REF (1979) Classification and nomenclature. Third Report of the International Committee on Taxonomy of Viruses. Intervirology 7:1–115
26.
go back to reference Ereshefsky M (2011) Mystery of mysteries: Darwin and the species problem. Cladistics 27:67–79CrossRef Ereshefsky M (2011) Mystery of mysteries: Darwin and the species problem. Cladistics 27:67–79CrossRef
27.
go back to reference Simmonds P (2018) A clash of ideas - the varying uses of the ‘species’ term in virology and their utility for classifying viruses in metagenomic datasets. J Gen Virol 99:277–287CrossRefPubMed Simmonds P (2018) A clash of ideas - the varying uses of the ‘species’ term in virology and their utility for classifying viruses in metagenomic datasets. J Gen Virol 99:277–287CrossRefPubMed
28.
go back to reference Van Regenmortel MHV, Burke DS, Calisher CH et al (2010) A proposal to change existing virus species names to non-Latinized binomials. Arch Virol 155:1909–1919CrossRefPubMed Van Regenmortel MHV, Burke DS, Calisher CH et al (2010) A proposal to change existing virus species names to non-Latinized binomials. Arch Virol 155:1909–1919CrossRefPubMed
31.
go back to reference Van Regenmortel MHV (2019) Solving the species problem in viral taxonomy: recommendations on non-latinized binomial species names and on abandoning attempts to assign metagenomic viral sequences to species taxa. Arch Virol 164:2223–2229CrossRefPubMed Van Regenmortel MHV (2019) Solving the species problem in viral taxonomy: recommendations on non-latinized binomial species names and on abandoning attempts to assign metagenomic viral sequences to species taxa. Arch Virol 164:2223–2229CrossRefPubMed
33.
go back to reference Quine WV (1990) Classes versus properties. Quiddities: an intermittently philosophical dictionary. Penguin Books, London, pp 22–24 Quine WV (1990) Classes versus properties. Quiddities: an intermittently philosophical dictionary. Penguin Books, London, pp 22–24
34.
go back to reference Fristrup K (1992) Character: Current Usages. In: Keller EF, Lloyd EA (eds) Keywords in evolutionary biology. MA (Harvard University Press), Cambridge, pp 45–51 Fristrup K (1992) Character: Current Usages. In: Keller EF, Lloyd EA (eds) Keywords in evolutionary biology. MA (Harvard University Press), Cambridge, pp 45–51
38.
go back to reference Van Regenmortel MHV (2017) Only viruses, but not their genome sequences, can be classified in hierarchical species and genus classes. Curr Top Virol 13:59–67 Van Regenmortel MHV (2017) Only viruses, but not their genome sequences, can be classified in hierarchical species and genus classes. Curr Top Virol 13:59–67
40.
go back to reference Postler TS, Clawson AN, Amarasinghe GK et al (2017) Possibility and challenges of conversion of current virus species names to Linnaean binomials. Syst Biol 66:463–473PubMed Postler TS, Clawson AN, Amarasinghe GK et al (2017) Possibility and challenges of conversion of current virus species names to Linnaean binomials. Syst Biol 66:463–473PubMed
Metadata
Title
A brief history of the species concept in virology and an opinion on the proposal to introduce Linnaean binomial virus species names
Author
M. H. V. Van Regenmortel
Publication date
01-12-2020
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 12/2020
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-020-04795-0

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