Principle for performing attractor transits with single control in Boolean networks

Bo Gao, Lixiang Li, Haipeng Peng, Jürgen Kurths, Wenguang Zhang, and Yixian Yang
Phys. Rev. E 88, 062706 – Published 4 December 2013

Abstract

We present an algebraic approach to reveal attractor transitions in Boolean networks under single control based on the recently developed matrix semitensor product theory. In this setting, the reachability of attractors is estimated by the state transition matrices. We then propose procedures that compute the shortest control sequence and the result of each step of input (control) exactly. The general derivation is exemplified by numerical simulations for two kinds of gene regulation networks, the protein-nucleic acid interactions network and the cAMP receptor of Dictyostelium discoideum network.

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  • Received 15 May 2013

DOI:https://doi.org/10.1103/PhysRevE.88.062706

©2013 American Physical Society

Authors & Affiliations

Bo Gao1,2,3,*, Lixiang Li2,†, Haipeng Peng2, Jürgen Kurths4, Wenguang Zhang5, and Yixian Yang1,2

  • 1School of Computer and Information Technology, Beijing Jiaotong University, Beijing 100044, China
  • 2Information Security Center, State Key Laboratory of Networking and Switching Technology, Beijing University of Posts and Telecommunications, Beijing 100876, China
  • 3School of Computer Information management, Inner Mongolia University of Finance and Economics, Hohhot 010051, China
  • 4Potsdam Institute for Climate Impact Research, Potsdam D-14473, Germany
  • 5College of Animal Science, Inner Mongolia Agricultural University, Hohhot 010018, China

  • *Corresponding author: gaobonmghhht@gmail.com
  • Corresponding author: li_lixiang2006@163.com

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Issue

Vol. 88, Iss. 6 — December 2013

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