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Detection of a Double-Stranded RNA Virus from a Strain of the Violet Root Rot Fungus Helicobasidium mompa Tanaka

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Abstract

Three double-stranded (ds) RNA species (ca. 1.30, 1.27 and 1.23×106) were isolated by CF-11 cellulose chromatography from a strain of the violet root rot fungus Helicobasidium mompa recovered from apple roots. Purified virion preparations contained isometric particles about 25nm in diameter, and also the same three species of dsRNA isolated from total extracts by CF-11 cellulose chromatography. The molecular mass of the coat protein was about 67K when estimated by SDS-PAGE. The largest dsRNA (referred to as dsRNA1) contains a single, long open reading frame of 1794 nucleotides that encodes a putative polypeptide containing 598 amino acid residues with a molecular mass of 69.9K. This polypeptide contains amino acid sequence motifs conserved in putative RNA-dependent RNA polymerases of RNA viruses. Phylogenetic analysis revealed similarities to RNA-dependent RNA polymerases from Atkinsonella hypoxylon 2H virus, a member of the family Partitiviridae.

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References

  1. Ito K., Gov Forest Exp Stn 43, 1-126, 1949.

    Google Scholar 

  2. Matsumoto N., PSJ Biocont Rep 4, 24-27, 1994.

    Google Scholar 

  3. Matsumoto N., JARQ 32, 31-35, 1998.

    Google Scholar 

  4. Buck K.W. (ed.), Fungal Virology. CRC Press, Boca Raton, 1985, pp. 2-84.

    Google Scholar 

  5. Nuss D.L. and Koltin Y., Annu Rev Phytopathol 28, 37-58, 1990.

    Google Scholar 

  6. Ghabrial S.A., Adv Virus Res 43, 303-388, 1994.

    Google Scholar 

  7. Biraghi A., Rep Congr Int Union For Res Org Rome 11, 643-645, 1953.

    Google Scholar 

  8. Day P.R., Dodds J.A., Elliston J.E., Jaynes R.A., and Anagnostakis S.L., Phytopathology 67, 1393-1396, 1977.

    Google Scholar 

  9. Elliston J.E., Jaynes R.A., Day P.R., and Anagnostakis S.L., Proc Am Phytopathol Soc 4, 83-84, 1977 (Abstract).

    Google Scholar 

  10. Katsumata H., Ogata T., and Matsumoto N., Ann Phytopathol Soc Jpn 62, 490-491, 1996.

    Google Scholar 

  11. Dodds J.A. and Bar-Joseph M., Phytopathology 73, 419-423, 1983.

    Google Scholar 

  12. Laemmli U.K., Nature 227, 680-685, 1970.

    Google Scholar 

  13. Bruenn J.A., Nucleic Acids Res 21, 5667-5669, 1993.

    Google Scholar 

  14. Higgins D.G., Bleasby A.J., and Fuchs R., Comput Appl Biosci 8, 189-191, 1992.

    Google Scholar 

  15. Valverde R.A., Nameth S., Abdallha O., Al-Musa O., Desjardins P., and Dodds A., Plant Sci 67, 195-201, 1990.

    Google Scholar 

  16. Oh C.-S. and Hillman B.I., J Gen Virol 76, 1461-1470, 1995.

    Google Scholar 

  17. Altschul S.F., Gish W., Miller W., Myers E.W., and Lipman D.J., J Mol Biol 215, 403-410, 1990.

    Google Scholar 

  18. Nogawa M., Kageyama T., Nakatani A., Taguchi G., Shimosaka M., and Okazaki M., Biosci Biotech Biochem 60, 784-788, 1996.

    Google Scholar 

  19. Xie W.S., Antoniw J.F., and White R.F., J Gen Virol 74, 1467-1470, 1993.

    Google Scholar 

  20. Hillman B.I., Fulbright D.W., Nuss D.L., and van Alfen N.K., in van Regenmortel M.H.V., Fauquet C.M., Bishop D.H.L., Carstens E.B., Estes M.K., Lemon S.M., Maniloff J., Mayo M.A., McGeoch D.J., Pringle C.R., and Wickner R.B. (eds) Virus Taxonomy Seventh Report of the International Committee on Taxonomy of Viruses. Academic Press, San Diego, California, USA, 2000, pp. 515-520.

    Google Scholar 

  21. Wickner R.B., Ghabrial S.A., Bruenn J.A., Buck K.W., Patterson J.L., Stuart K.D., and Wang C.C., in van Regenmortel M.H.V., Fauquet C.M., Bishop D.H.L., Carstens E.B., Estes M.K., Lemon S.M., Maniloff J., Mayo M.A., McGeoch D.J., Pringle C.R., and Wickner R.B. (eds) Virus Taxonomy Seventh Report of the International Committee on Taxonomy of Viruses. Academic Press, San Diego, California, USA, 2000, pp. 491-501.

    Google Scholar 

  22. Ghabrial S.A., Bozarth R.F., Buck K.W., Martelli G.P., and Milne R.G., in van Regenmortel M.H.V., Fauquet C.M., Bishop D.H.L., Carstens E.B., Estes M.K., Lemon S.M., Maniloff J., Mayo M.A., McGeoch D.J., Pringle C.R., and Wickner R.B. (eds) Virus Taxonomy Seventh Report of the International Committee on Taxonomy of Viruses. Academic Press San Diego, California, USA, 2000, pp. 503-513.

    Google Scholar 

  23. Suzaki K., Sasaki A., Kanematsu S., Ozaki K., Yoshida K., and Matsumoto N., Jpn J Phytopathol 67, 164, 2001.

    Google Scholar 

  24. Suzuki N., Chen B., and Nuss D.L., J Virol 73, 9478-9484, 1999.

    Google Scholar 

  25. Suzuki N., Geletka L.M., and Nuss D.L., J Virol 74, 7568-7577, 2000.

    Google Scholar 

  26. Huang S. and Ghabrial S.A., Proc Natl Acad Sci USA 93, 12541-12546, 1996.

    Google Scholar 

  27. Tai J.H. and Ip C.F., Virology 206, 773-776, 1995.

    Google Scholar 

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Osaki, H., Nomura, K., Iwanami, T. et al. Detection of a Double-Stranded RNA Virus from a Strain of the Violet Root Rot Fungus Helicobasidium mompa Tanaka. Virus Genes 25, 139–145 (2002). https://doi.org/10.1023/A:1020105701017

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