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Complete genome sequence of a novel virus, classifiable within the Potyviridae family, which infects passion fruit (Passiflora edulis)

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Abstract

We report the complete nucleotide sequence of a new member of the Potyviridae family isolated from passion fruit plants grown in Israel, called Passiflora edulis symptomless virus (PeSV). The PeSV genome is 9,928 nucleotides long and encodes a 3,173 amino acids polyprotein that is predicted to be proteolytically cleaved into 10 mature peptides. Our phylogenetic analysis shows that PeSV represents a new species, and is most closely related to rose yellow mosaic virus (RoYMV). According to currently accepted criteria for genus demarcation, both viruses should be assigned as representative isolates of new species in the recently approved genus, Roymovirus, in the Potyviridae family.

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References

  1. Adams MJ, Antoniw JF, Beaudoin F (2005) Overview and analysis of the polyprotein cleavage sites in the family Potyviridae. Mol Plant Pathol 6:471–487

    Article  CAS  PubMed  Google Scholar 

  2. Adams MJ, Antoniw JF, Fauquet CM (2005) Molecular criteria for genus and species discrimination within the family Potyviridae. Arch Virol 150:459–479

    Article  CAS  PubMed  Google Scholar 

  3. Blumenfeld A, Shaya F (2004) Sweet dream. Yevul See 6:40–41

    Google Scholar 

  4. Iwai H, Yamashita Y, Nishi N, Nakamura M (2006) The potyvirus associated with the dappled fruit of Passiflora edulis in Kagoshima prefecture, Japan is the third strain of the proposed new species East Asian Passiflora virus (EAPV) phylogenetically distinguished from strains of Passion fruit woodiness virus. Arch Virol 151:811–818

    Article  CAS  PubMed  Google Scholar 

  5. Kumar S, Stecher G, Tamura K (2016) MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 33:1870–1874

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  6. Langmead B, Salzberg SL (2012) Fast gapped-read alignment with Bowtie 2. Nat Meth 9:357–359

    Article  CAS  Google Scholar 

  7. Mollov D, Lockhart B, Zlesak D (2013) Complete nucleotide sequence of rose yellow mosaic virus, a novel member of the family Potyviridae. Arch Virol 158:1917–1923

    Article  CAS  PubMed  Google Scholar 

  8. Nei M, Kumar S (2000) Molecular evolution and phylogenetics. Oxford University Press, New York

    Google Scholar 

  9. Olspert A, Chung BY, Atkins JF, Carr JP, Firth AE (2015) Transcriptional slippage in the positive-sense RNA virus family Potyviridae. EMBO Rep 16:995–1004

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  10. Schulz MH, Zerbino DR, Vingron M, Birney E (2012) Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels. Bioinformatics 28:1086–1092

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  11. Seo JK, Kim MK, Kwak HR, Kim JS, Choi HS (2017) Complete genome sequence of longan witches’ broom-associated virus, a novel member of the family Potyviridae. Arch Virol 162:2885–2889

    Article  CAS  PubMed  Google Scholar 

  12. Spiegel S, Zeidan M, Sobolev I, Beckelman Y, Holdengreber V, Tam Y, Joseph MB, Lipsker Z, Gera A (2007) The complete nucleotide sequence of Passiflora latent virus and its phylogenetic relationship to other carlaviruses. Arch Virol 152:181–189

    Article  CAS  PubMed  Google Scholar 

  13. Ward CW (2017) Is it time to retire the genus Rymovirus from the family Potyviridae? Arch Virol 162:2175–2179

    Article  CAS  PubMed  Google Scholar 

  14. Wylie SJ, Adams A, Chalam C, Kreuze J, López-Moya JJ, Ohshima K, Praveen S, Rabenstein F, Stenger D, Wang A, Serbini FM, ICTV Report Consortium (2017) ICTV virus taxonomy profile: Potyviridae. J Gen Virol 98:352–354

    Article  CAS  PubMed  PubMed Central  Google Scholar 

Download references

Funding

This study was partly funded by Grant number 837-0147-14 from the Office of the Chief Scientist, Ministry of Agriculture and Rural Development of Israel, to A. S.

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Correspondence to Héctor Candela.

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All authors declare that no conflict of interest exists.

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This article does not contain any studies with human participants or animals performed by any of the authors.

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Handling Editor: Ralf Georg Dietzgen.

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705_2018_3983_MOESM1_ESM.pdf

Supplemental Figure 1. Matrix of nucleotide sequence identity values for selected members of the Potyviridae family. (PDF 95 kb)

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Jover-Gil, S., Beeri, A., Fresnillo, P. et al. Complete genome sequence of a novel virus, classifiable within the Potyviridae family, which infects passion fruit (Passiflora edulis). Arch Virol 163, 3191–3194 (2018). https://doi.org/10.1007/s00705-018-3983-7

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  • DOI: https://doi.org/10.1007/s00705-018-3983-7

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