Abstract
We report the complete nucleotide sequence of a new member of the Potyviridae family isolated from passion fruit plants grown in Israel, called Passiflora edulis symptomless virus (PeSV). The PeSV genome is 9,928 nucleotides long and encodes a 3,173 amino acids polyprotein that is predicted to be proteolytically cleaved into 10 mature peptides. Our phylogenetic analysis shows that PeSV represents a new species, and is most closely related to rose yellow mosaic virus (RoYMV). According to currently accepted criteria for genus demarcation, both viruses should be assigned as representative isolates of new species in the recently approved genus, Roymovirus, in the Potyviridae family.
Similar content being viewed by others
References
Adams MJ, Antoniw JF, Beaudoin F (2005) Overview and analysis of the polyprotein cleavage sites in the family Potyviridae. Mol Plant Pathol 6:471–487
Adams MJ, Antoniw JF, Fauquet CM (2005) Molecular criteria for genus and species discrimination within the family Potyviridae. Arch Virol 150:459–479
Blumenfeld A, Shaya F (2004) Sweet dream. Yevul See 6:40–41
Iwai H, Yamashita Y, Nishi N, Nakamura M (2006) The potyvirus associated with the dappled fruit of Passiflora edulis in Kagoshima prefecture, Japan is the third strain of the proposed new species East Asian Passiflora virus (EAPV) phylogenetically distinguished from strains of Passion fruit woodiness virus. Arch Virol 151:811–818
Kumar S, Stecher G, Tamura K (2016) MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 33:1870–1874
Langmead B, Salzberg SL (2012) Fast gapped-read alignment with Bowtie 2. Nat Meth 9:357–359
Mollov D, Lockhart B, Zlesak D (2013) Complete nucleotide sequence of rose yellow mosaic virus, a novel member of the family Potyviridae. Arch Virol 158:1917–1923
Nei M, Kumar S (2000) Molecular evolution and phylogenetics. Oxford University Press, New York
Olspert A, Chung BY, Atkins JF, Carr JP, Firth AE (2015) Transcriptional slippage in the positive-sense RNA virus family Potyviridae. EMBO Rep 16:995–1004
Schulz MH, Zerbino DR, Vingron M, Birney E (2012) Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels. Bioinformatics 28:1086–1092
Seo JK, Kim MK, Kwak HR, Kim JS, Choi HS (2017) Complete genome sequence of longan witches’ broom-associated virus, a novel member of the family Potyviridae. Arch Virol 162:2885–2889
Spiegel S, Zeidan M, Sobolev I, Beckelman Y, Holdengreber V, Tam Y, Joseph MB, Lipsker Z, Gera A (2007) The complete nucleotide sequence of Passiflora latent virus and its phylogenetic relationship to other carlaviruses. Arch Virol 152:181–189
Ward CW (2017) Is it time to retire the genus Rymovirus from the family Potyviridae? Arch Virol 162:2175–2179
Wylie SJ, Adams A, Chalam C, Kreuze J, López-Moya JJ, Ohshima K, Praveen S, Rabenstein F, Stenger D, Wang A, Serbini FM, ICTV Report Consortium (2017) ICTV virus taxonomy profile: Potyviridae. J Gen Virol 98:352–354
Funding
This study was partly funded by Grant number 837-0147-14 from the Office of the Chief Scientist, Ministry of Agriculture and Rural Development of Israel, to A. S.
Author information
Authors and Affiliations
Corresponding author
Ethics declarations
Conflict of interest
All authors declare that no conflict of interest exists.
Ethical approval
This article does not contain any studies with human participants or animals performed by any of the authors.
Additional information
Handling Editor: Ralf Georg Dietzgen.
Electronic supplementary material
Below is the link to the electronic supplementary material.
705_2018_3983_MOESM1_ESM.pdf
Supplemental Figure 1. Matrix of nucleotide sequence identity values for selected members of the Potyviridae family. (PDF 95 kb)
Rights and permissions
About this article
Cite this article
Jover-Gil, S., Beeri, A., Fresnillo, P. et al. Complete genome sequence of a novel virus, classifiable within the Potyviridae family, which infects passion fruit (Passiflora edulis). Arch Virol 163, 3191–3194 (2018). https://doi.org/10.1007/s00705-018-3983-7
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00705-018-3983-7