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Complete nucleotide sequence of an isolate of coleus vein necrosis virus from verbena

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References

  • MJ Adams JF Antoniw M Bar-Joseph AA Brunt T Candresse GD Foster GP Martelli RG Milne SK Zavriev CM Fauquet (2004) ArticleTitleThe new plant virus family Flexiviridae and assessment of molecular criteria for species demarcation Arch Virol 149 1045–1060 Occurrence Handle15098118 Occurrence Handle1:CAS:528:DC%2BD2cXjt1Sgtr4%3D

    PubMed  CAS  Google Scholar 

  • SF Altschul TL Madden AA Schäffer J Zhang Z Zhang W Miller DJ Lipman (1997) ArticleTitleGapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Res 25 3389–3402 Occurrence Handle9254694 Occurrence Handle10.1093/nar/25.17.3389 Occurrence Handle1:CAS:528:DyaK2sXlvFyhu7w%3D

    Article  PubMed  CAS  Google Scholar 

  • A Callaway D Giesman-Cookmeyer ET Gillock TL Sit SA Lommel (2001) ArticleTitleThe multifunctional capsid proteins of plant RNA viruses Ann Rev Phytopath 39 419–460 Occurrence Handle10.1146/annurev.phyto.39.1.419 Occurrence Handle1:CAS:528:DC%2BD3MXmvVygsb0%3D

    Article  CAS  Google Scholar 

  • GH Cowan F Lioliopoulou A Ziegler L Torrance (2002) ArticleTitleSubcellular localization, protein interactions, and RNA binding of potato mop-top virus triple gene block proteins Virology 298 106–115 Occurrence Handle12093178 Occurrence Handle10.1006/viro.2002.1435 Occurrence Handle1:CAS:528:DC%2BD38XkvFKktrc%3D

    Article  PubMed  CAS  Google Scholar 

  • MA Guaragna RL Jordan ML Putnam (2006) ArticleTitleFirst molecular evidence of the occurrence of a pea mosaic strain of Bean yellow mosaic virus in Verbena × hybrida Acta Hortic 722 305–312 Occurrence Handle1:CAS:528:DC%2BD2sXptlWjtQ%3D%3D

    CAS  Google Scholar 

  • X Huang A Madan (1999) ArticleTitleCAP3: a DNA sequence assembly program Genome Res 9 868–877 Occurrence Handle10508846 Occurrence Handle10.1101/gr.9.9.868 Occurrence Handle1:CAS:528:DyaK1MXmslKgs7Y%3D

    Article  PubMed  CAS  Google Scholar 

  • EV Koonin VV Dolja (1993) ArticleTitleEvolution and taxonomy of positive-strand RNA viruses: implications of comparative analysis of amino acid sequences Crit Rev Biochem Mol Biol 28 375–430 Occurrence Handle8269709 Occurrence Handle10.3109/10409239309078440 Occurrence Handle1:CAS:528:DyaK3sXms1KjsL0%3D

    Article  PubMed  CAS  Google Scholar 

  • J Kraus ML Putnam RR Martin (2006) ArticleTitleCharacterization of viruses in Verbena × hybrida Phytopathology 96 S63

    Google Scholar 

  • A Krogh B Larsson B von Heijne ELL Sonnhammer (2001) ArticleTitlePredicting transmembrane protein topology with a hidden Markov model: application to complete genomes J Mol Biol 305 567–580 Occurrence Handle11152613 Occurrence Handle10.1006/jmbi.2000.4315 Occurrence Handle1:CAS:528:DC%2BD3MXisFCguw%3D%3D

    Article  PubMed  CAS  Google Scholar 

  • A Marchler-Bauer SH Bryant (2004) ArticleTitleCD-Search: protein domain annotations on the fly Nucleic Acids Res 32 W327–W331 Occurrence Handle15215404 Occurrence Handle10.1093/nar/gkh454 Occurrence Handle1:CAS:528:DC%2BD2cXlvFKntb4%3D

    Article  PubMed  CAS  Google Scholar 

  • GP Martelli MJ Adams JF Kreuze VV Dolja (2007) ArticleTitleFamily Flexiviridae: a case study in virion and genome plasticity Ann Rev Phytopath 45 73–100 Occurrence Handle10.1146/annurev.phyto.45.062806.094401 Occurrence Handle1:CAS:528:DC%2BD2sXhtVKls7rO

    Article  CAS  Google Scholar 

  • RR Martin PR Bristow (1988) ArticleTitleA carlavirus associated with blueberry scorch disease Phytopathology 78 1636–1640 Occurrence Handle10.1094/Phyto-78-1636

    Article  Google Scholar 

  • DM Mathews JA Dodds (2006) ArticleTitleDetection of multiple viruses in Verbena, Diascia and Lobelia plants Acta Hortic 722 219–228 Occurrence Handle1:CAS:528:DC%2BD2sXptlSqtw%3D%3D

    CAS  Google Scholar 

  • DS Mollov MC Hayslette KA Eichstaedt NG Beckman ML Daughtrey BE Lockhart (2007) ArticleTitleIdentification and characterization of a carlavirus causing veinal necrosis of coleus Plant Dis 91 754–757 Occurrence Handle10.1094/PDIS-91-6-0754 Occurrence Handle1:CAS:528:DC%2BD2sXms1Oju7k%3D

    Article  CAS  Google Scholar 

  • SY Morozov AG Solovyev (2003) ArticleTitleTriple gene block: modular design of a multifunctional machine for plant virus movement J Gen Virol 84 1351–1366 Occurrence Handle12771402 Occurrence Handle10.1099/vir.0.18922-0 Occurrence Handle1:CAS:528:DC%2BD3sXks1Gmtrs%3D

    Article  PubMed  CAS  Google Scholar 

  • JD Thompson DG Higgins TJ Gibson (1994) ArticleTitleCLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res 22 4673–4680 Occurrence Handle7984417 Occurrence Handle10.1093/nar/22.22.4673 Occurrence Handle1:CAS:528:DyaK2MXitlSgu74%3D

    Article  PubMed  CAS  Google Scholar 

  • Tiffany M (2007) Positive ornamental plant samples. http://www.agdia.com/testing/positive.results/index.html

  • IE Tzanetakis KE Keller RR Martin (2005) ArticleTitleThe use of reverse transcriptase for efficient first- and second-strand cDNA synthesis from single- and double-stranded RNA templates J Virol Methods 124 73–77 Occurrence Handle15664053 Occurrence Handle10.1016/j.jviromet.2004.11.006 Occurrence Handle1:CAS:528:DC%2BD2MXksl2itQ%3D%3D

    Article  PubMed  CAS  Google Scholar 

  • IE Tzanetakis RR Martin (2005) ArticleTitleNew features in the genus Ilarvirus revealed by the nucleotide sequence of Fragaria chiloensis latent virus Virus Res 112 32–37 Occurrence Handle15878214 Occurrence Handle10.1016/j.virusres.2005.02.010 Occurrence Handle1:CAS:528:DC%2BD2MXmt1SktLk%3D

    Article  PubMed  CAS  Google Scholar 

  • IE Tzanetakis AB Halgren N Mosier RR Martin (2007) ArticleTitleIdentification and characterization of Raspberry mottle virus, a novel member of the Closteroviridae Virus Res 127 26–33 Occurrence Handle17448559 Occurrence Handle10.1016/j.virusres.2007.03.010 Occurrence Handle1:CAS:528:DC%2BD2sXlvVOnsbY%3D

    Article  PubMed  CAS  Google Scholar 

  • SM Wong KC Lee HH Yu WF Leong (1998) ArticleTitlePhylogenetic analysis of triple gene block viruses based on the TGB 1 homolog gene indicates a convergent evolution Virus Genes 16 295–302 Occurrence Handle9654683 Occurrence Handle10.1023/A:1008034807216 Occurrence Handle1:CAS:528:DyaK1cXktlKgtbg%3D

    Article  PubMed  CAS  Google Scholar 

  • N Yoshikawa RH Converse (1990) ArticleTitleStrawberry pallidosis disease: distinctive dsRNA species associated with latent infections in indicators and in diseased strawberry cultivars Phytopathology 80 543–548 Occurrence Handle10.1094/Phyto-80-543 Occurrence Handle1:CAS:528:DyaK3cXlvVyhtb8%3D

    Article  CAS  Google Scholar 

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Correspondence to R. R. Martin.

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Correspondence: Dr. Robert R. Martin, USDA/ARS Horticultural Crops Research Laboratory, Corvallis, OR 97331, U.S.A.

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Kraus, J., Tzanetakis, I., Putnam, M. et al. Complete nucleotide sequence of an isolate of coleus vein necrosis virus from verbena. Arch Virol 153, 381–384 (2008). https://doi.org/10.1007/s00705-007-1068-0

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  • DOI: https://doi.org/10.1007/s00705-007-1068-0

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