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Complete genomic characterization of cell culture adapted human G12P[6] rotaviruses isolated from South Korea

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Abstract

Two unusual human rotavirus G12 strains, CAU195 and CAU214, were isolated from female pediatric diarrhea patients under 12 months of age in 2006 using a cell culture system and their full genome sequences were analyzed. The 11 gene segments of both Korean G12 strains were classified as G12-P[6]-R1-C1-M1-I1-A1-N1-T1-E1-H1 genotypes. Notably, the Korean strains were of the same genotypes as previously reported strains isolated from Bangladesh in 2003 (Dhaka12-03), from the United States in 2005–2006 (US6597), and from Germany in 2008 (GER126-08 and GER172-08), suggesting that closely related G12P[6] strains are persistent and widespread.

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References

  1. A.Z. Kapikian, Novartis Found. Symp. 238, 153–171; discussion 171–159 (2001)

  2. U.D. Parashar, E.G. Hummelman, J.S. Bresee, M.A. Miller, R.I. Glass, Emerg. Infect. Dis. 9, 565–572 (2003)

    Article  PubMed Central  PubMed  Google Scholar 

  3. U.D. Parashar, C.J. Gibson, J.S. Bresse, R.I. Glass, Emerg. Infect. Dis. 12, 304–306 (2006)

    Article  PubMed Central  PubMed  Google Scholar 

  4. J.K. Seo, J.G. Sim, Pediatr. Int. 42, 406–410 (2000)

    Article  CAS  PubMed  Google Scholar 

  5. M.K. Estes, A.Z. Kapikian, in Fields Virology ed. by D.M. Knipe, P.M. Howley, D.E. Griffin, R.A. Lamb, M.A. Martin, B. Roizman, S.E. Straus, 5th edn. (Lippincott Williams & Wilkins, Philadelphia, 2007), pp. 1917–1974

  6. K. Ursu, P. Kisfali, D. Rigo, E. Ivanics, K. Erdelyi, A. Dan, B. Melegh, V. Martella, K. Banyai, Arch. Virol. 154, 1365–1369 (2009)

    Article  CAS  PubMed  Google Scholar 

  7. O.D. Solberg, M.E. Hasing, G. Trueba, J.N. Eisenberg, Virology 385, 58–67 (2009)

    Article  CAS  PubMed  Google Scholar 

  8. J. Matthijnssens, M. Ciarlet, E. Heiman, I. Arijs, T. Delbeke, S.M. McDonald, E.A. Palombo, M. Iturriza-Gómara, P. Maes, J.T. Patton, M. Rahman, M. Van Ranst, J. Virol. 82, 3204–3219 (2008)

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  9. K. Taniguchi, T. Urasawa, N. Kobayashi, M. Gorziglia, S. Urasawa, J. Virol. 64, 5640–5644 (1990)

    CAS  PubMed  PubMed Central  Google Scholar 

  10. A.A. Castello, M.H. Arguelles, R.P. Rota, A. Olthoff, B. Jiang, R.I. Glass, J.R. Gentsch, G. Glikmann, J. Clin. Microbiol. 44, 2046–2050 (2006)

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  11. A.A. Castello, T. Nakagomi, O. Nakagomi, B. Jiang, J.O. Kang, R.I. Glass, G. Glikmann, J.R. Gentsch, J. Med. Virol. 81, 371–381 (2009)

    Article  CAS  PubMed  Google Scholar 

  12. M. Rahman, J. Matthijnssens, X. Yang, T. Delbeke, I. Arijs, K. Taniguchi, M. Iturriza-Gomara, N. Iftekharuddin, T. Azim, M. Van Ranst, J. Virol. 81, 2382–2390 (2007)

    Article  CAS  PubMed  Google Scholar 

  13. S.K. Paul, M.U. Ahmed, M.A. Hossain, M.C. Mahmud, M.R. Bhuiyan, S.K. Saha, S. Tabassum, Mymensingh Med. J. 19, 16–26 (2010)

    CAS  PubMed  Google Scholar 

  14. E. Pietruchinski, F. Benati, F. Lauretti, J. Kisielius, M. Ueda, E.M. Volotao, C.C. Soares, Y. Hoshino, R.E. Linhares, C. Nozawa, N. Santos, J. Med. Virol. 78, 1241–1249 (2006)

    Article  CAS  PubMed  Google Scholar 

  15. C. Pietsch, U.G. Liebert, Emerg. Infect. Dis. 15, 1512–1515 (2009)

    Article  PubMed Central  PubMed  Google Scholar 

  16. K. Banyai, A. Bogdan, P. Kisfali, P. Molnar, I. Mihaly, B. Melegh, V. Martella, J.R. Gentsch, G. Szucs, Emerg. Infect. Dis. 13, 916–919 (2007)

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  17. S. Das, V. Varghese, S. Chaudhury, P. Barman, S. Mahapatra, K. Kojima, S.K. Bhattacharya, T. Krishnan, R.K. Ratho, G.P. Chhotray, A.C. Phukan, N. Kobayashi, T.N. Naik, J. Clin. Microbiol. 41, 2760–2762 (2003)

    Article  PubMed Central  PubMed  Google Scholar 

  18. A. Mukherjee, S. Chattopadhyay, P. Bagchi, D. Dutta, N.B. Singh, R. Arora, U.D. Parashar, J.R. Gentsch, M. Chawla-Sarkar, Infect. Genet. Evol. 10, 311–320 (2010)

    Article  CAS  PubMed  Google Scholar 

  19. W.N. Wulan, E. Listiyaningsih, K.M. Samsi, M.D. Agtini, M.R. Kasper, S.D. Putnam, Emerg. Infect. Dis. 16, 159–161 (2010)

    Article  PubMed Central  PubMed  Google Scholar 

  20. T. Grassi, A. De Donno, M. Guido, G. Gabutti, J. Prev. Med. Hyg. 47, 138–141 (2006)

    CAS  PubMed  Google Scholar 

  21. K. Shinozaki, M. Okada, S. Nagashima, I. Kaiho, K. Taniguchi, J. Med. Virol. 73, 612–616 (2004)

    Article  CAS  PubMed  Google Scholar 

  22. N.A. Cunliffe, B.M. Ngwira, W. Dove, O. Nakagomi, T. Nakagomi, A. Perez, C.A. Hart, P.N. Kazembe, C.C. Mwansambo, Emerg. Infect. Dis. 15, 87–90 (2009)

    Article  PubMed Central  PubMed  Google Scholar 

  23. R. Uchida, B.D. Pandey, J.B. Sherchand, K. Ahmed, M. Yokoo, T. Nakagomi, L.E. Cuevas, N.A. Cunliffe, C.A. Hart, O. Nakagomi, J. Clin. Microbiol. 44, 3499–3505 (2006)

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  24. M. Martinez, A.A. Amarilla, M.E. Galeano, V.H. Aquino, N. Farina, G. Russomando, G.I. Parra, Arch. Virol. 155, 525–533 (2010)

    Article  CAS  PubMed  Google Scholar 

  25. G.I. Parra, E.E. Espinola, A.A. Amarilla, J. Stupka, M. Martinez, M. Zunini, M.E. Galeano, K. Gomes, G. Russomando, J. Arbiza, J. Clin. Virol. 40, 135–141 (2007)

    Article  CAS  PubMed  Google Scholar 

  26. M.M. Alam, S.A. Malik, S. Shaukat, A. Naeem, S. Sharif, M. Angez, M.S. Rana, A. Khurshid, S.Z. Zaidi, Virus Res. 144, 280–284 (2009)

    Article  CAS  PubMed  Google Scholar 

  27. A.M. Kheyami, T. Nakagomi, O. Nakagomi, W. Dove, C.A. Hart, N.A. Cunliffe, J. Clin. Microbiol. 46, 1185–1191 (2008)

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  28. A. Steyer, M. Poljsak-Prijatelj, T.L. Bufon, N. Marcun-Varda, J. Marin, J. Med. Virol. 79, 626–632 (2007)

    Article  CAS  PubMed  Google Scholar 

  29. N.A. Page, M.C. de Beer, L.M. Seheri, J.B. Dewar, A.D. Steele, J. Med. Virol. 81, 106–113 (2009)

    Article  CAS  PubMed  Google Scholar 

  30. V.P. Le, J.Y. Kim, S.L. Cho, S.W. Nam, I. Lim, H.J. Lee, K. Kim, S.I. Chung, W. Song, K.M. Lee, M.S. Rhee, J.S. Lee, W. Kim, J. Med. Virol. 80, 175–182 (2008)

    Article  CAS  PubMed  Google Scholar 

  31. G. Cilla, M. Montes, M. Gomariz, L. Pineiro, E. Perez-Trallero, Eur. J. Clin. Microbiol. Infect. Dis. 29, 955–960 (2010)

    Article  CAS  PubMed  Google Scholar 

  32. K. Ahmed, R. Batuwanthudawe, T.G. Chandrasena, M.T. Mitui, S. Rajindrajith, G. Galagoda, S.B. Pun, R. Uchida, O. Kunii, K. Moji, N. Abeysinghe, A. Nishizono, O. Nakagomi, Arch. Virol. 155, 71–75 (2009)

    Article  PubMed  Google Scholar 

  33. Y. Pongsuwanna, R. Guntapong, M. Chiwakul, R. Tacharoenmuang, N. Onvimala, M. Wakuda, N. Kobayashi, K. Taniguchi, J. Clin. Microbiol. 40, 1390–1394 (2002)

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  34. D.D. Griffin, T. Nakagomi, Y. Hoshino, O. Nakagomi, C.D. Kirkwood, U.D. Parashar, R.I. Glass, J.R. Gentsch, Virology 294, 256–269 (2002)

    Article  CAS  PubMed  Google Scholar 

  35. M.M. Freeman, T. Kerin, J. Hull, E. Teel, M. Esona, U. Parashar, R.I. Glass, J.R. Gentsch, J. Med. Virol. 81, 736–746 (2009)

    Article  CAS  PubMed  Google Scholar 

  36. J. Matthijnssens, M. Rahman, V. Martella, Y. Xuelei, S. De Vos, K. De Leener, M. Ciarlet, C. Buonavoglia, M. Van Ranst, J. Virol. 80, 3801–3810 (2006)

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  37. V.P. Le, Y.C. Chung, K. Kim, S.I. Chung, I. Lim, W. Kim, J. Med. Virol. 82, 886–896 (2010)

    Article  CAS  PubMed  Google Scholar 

  38. V. Gouvea, R.I. Glass, P. Woods, K. Taniguchi, H.F. Clark, B. Forrester, Z.Y. Fang, J. Clin. Microbiol. 28, 276–282 (1990)

    CAS  PubMed  PubMed Central  Google Scholar 

  39. J.R. Gentsch, R.I. Glass, P. Woods, V. Gouvea, M. Gorziglia, J. Flores, B.K. Das, M.K. Bhan, J. Clin. Microbiol. 30, 1365–1373 (1992)

    CAS  PubMed  PubMed Central  Google Scholar 

  40. J.D. Thompson, T.J. Gibson, F. Plewniak, F. Jeanmougin, D.G. Higgins, Nucleic Acids Res. 25, 4876–4882 (1997)

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  41. N. Saitou, M. Nei, Mol. Biol. Evol. 4, 406–425 (1987)

    CAS  PubMed  Google Scholar 

  42. J. Felsenstein, PHYLIP version 3.5c (phylogeny inference package), Department of Genetics, University of Washington 1993

  43. T.H. Jukes, C.R. Cantor, in Evolution of Protein Molecules. ed. by H.N. Munro. Mammalian Protein Metabolism (Academic Press, New York, 1969) pp. 21–132

    Chapter  Google Scholar 

  44. J. Felsenstein, Evolution 39, 783–791 (1985)

    Article  PubMed  Google Scholar 

  45. S. Ghosh, V. Varghese, S. Samajdar, S.K. Bhattacharya, N. Kobayashi, T.N. Naik, Arch. Virol. 151, 1329–1344 (2006)

    Article  CAS  PubMed  Google Scholar 

  46. M. Rahman, R. Sultana, G. Ahmed, S. Nahar, Z.M. Hassan, F. Saiada, G. Podder, A.S. Faruque, A.K. Siddique, D.A. Sack, J. Matthijnssens, M. Van Ranst, T. Azim, Emerg. Infect. Dis. 13, 18–24 (2007)

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  47. J. Matthijnssens, M. Ciarlet, M. Rahman, H. Attoui, K. Banyai, M.K. Estes, J.R. Gentsch, M. Iturriza-Gomara, C.D. Kirkwood, V. Martella, P.P. Mertens, O. Nakagomi, J.T. Patton, F.M. Ruggeri, L.J. Saif, N. Santos, A. Steyer, K. Taniguchi, U. Desselberger, M. Van Ranst, Arch. Virol. 153, 1621–1629 (2008)

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  48. S. Ghosh, N. Kobayashi, S. Nagashima, M. Chawla-Sarkar, T. Krishnan, B. Ganesh, T.N. Naik, Virus Genes 40, 382–388 (2010)

    Article  CAS  PubMed  Google Scholar 

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Acknowledgment

This study was supported by a National Research Foundation of Korea (NRF) grant funded by the Korean government (MEST) (No. 2010-0012857).

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Authors and Affiliations

  1. Department of Microbiology and Research Institute for Translational System Biomics, Chung-Ang University College of Medicine, Seoul, South Korea

    Van Thai Than, Van Phan Le & Wonyong Kim

  2. Department of Pediatrics, Chung-Ang University College of Medicine, Seoul, South Korea

    Inseok Lim

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Correspondence to Wonyong Kim.

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Inseok Lim and Wonyong Kim contributed equally to this work.

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Than, V.T., Le, V.P., Lim, I. et al. Complete genomic characterization of cell culture adapted human G12P[6] rotaviruses isolated from South Korea. Virus Genes 42, 317–322 (2011). https://doi.org/10.1007/s11262-011-0576-x

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