Skip to main content

Advertisement

Log in

A cDNA clone for a novel nuclear protein with DNA binding activity

  • Original Articles
  • Published:
Chromosoma Aims and scope Submit manuscript

Abstract

In an effort to identify trans-acting factors regulating specific genes, we cloned a novel human gene, DBP-5. The cDNA clone contains a predicted open reading frame coding for a potential 1,179 amino acid protein. The mRNA corresponding to DBP-5 is ubiquitously distributed, and the gene is phylogenetically conserved. Immunofluorescence analyses with several cell lines indicate that the protein is localized to the nucleus. Sequence analysis revealed unusual features of the predicted protein structure, including four completely conserved repeats. The phylogenetic conservation of DBP-5, the ubiquity of its expression, its nuclear localization, and its ability to bind DNA sequences, raise the possibility that DBP-5 may play a role in the organization of interphase chromatin and/or in transcriptional regulation.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Berdichevskii FB, Chumakov IM, Kiselev LL (1988) Determination of the nucleotide sequence of the son3 fragment of the human genome: identification of a new protein with an unusual structure and homology with DNA-binding proteins. Mol Biol 22: 639–646

    Google Scholar 

  • Bull M, van Hoef A, Gorski J (1990) Transcription analysis of class II human leukocyte antigen genes from normal and immunodeficient B lymphocytes, using polymerase chain reaction. Mol Cell Biol 10: 3792–3796

    Google Scholar 

  • Dale RM, McClure BA, Houchins JP (1985) A rapid single-stranded cloning strategy for producing a sequential series of overlapping clones for use in DNA sequencing: Application to sequencing the arm mitochondrial 18 S rDNA. Plasmid 13: 31–40

    Google Scholar 

  • Dieckmann CL, Tzagoloff A (1985) Assembly of the mitochondrial membrane system. CBP6, a yesst nuclear gene necessary for synthesis of cytochrome b. J Biol Chem 260: 1513–1520

    Google Scholar 

  • Ehrlich H, Lee JS, Petersen JW, Bugawan T, DeMars R (1986) Molecular analysis of HLA class I and class II antigen loss mutants reveals a homozygous deletion of the DR, DQ and part of the DP region: Implication for class II gene order. Hum Immunol 16: 205–219

    Google Scholar 

  • Gladstone P, Pious D (1980) Identification of a transacting function regulating HLA-DR expression in a DR-negative B cell variant. Somatic Cell Genet 6: 285–298 (Abstract)

    Google Scholar 

  • Harlow E, Lane D (1988) Antibodies, A laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY

    Google Scholar 

  • Hume CR, Lee JS (1989) Congenital immunodeficiencies associated with absence of HLA class II antigens on lymphocytes result from distinct mutations in trans-acting factors. Hum Immunol 26: 288–309

    Google Scholar 

  • Hume CR, Shookster LA, Collins N, O'Reilly R, Lee JS (1989) Bare Lymphocyte Syndrome: Altered class II expression in two B cell lines. Hum Immunol 25: 1–11

    Google Scholar 

  • Jackson RJ, Standart N (1990) Do the poly(A) tail and 3′ untranslated region control mRNA translation? Cell 62: 15–24

    Google Scholar 

  • Johnson PF, McKnight SL (1989) Eukaryotic transcriptional regulatory proteins. Annu Rev Biochem 58: 799–839

    Google Scholar 

  • Klemsz MJ, McKercher SR, Celada A, Van Beveren C, Maki RA (1990) The macrophage and B cell-specific transcription factor PU. 1 is related to the ets oncogene. Cell 61: 113–124

    Google Scholar 

  • Liou H-C, Boothby MR, Glimcher LH (1988) Distinct cloned class II MHC DNA binding proteins recognize the X box transcription element. Science 242: 69–71

    Google Scholar 

  • Macejak DG, Sarnow P (1991) Internal initiation of translation mediated by the 5′ leader of a cellular mRNA. Nature 353: 90–94

    Google Scholar 

  • Maniatis T, Fritsch EF, Sambrook J (1982) Molecular cloning. A laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY

    Google Scholar 

  • Mirkovitch J, Mirault M-E, Laemmli UK (1984) Organization of the higher-order chromatin loop: Specific DNA attachment sites on nuclear scaffold. Cell 39: 223–232

    Google Scholar 

  • Mitchell PJ, Tjian R (1989) Transcriptional regulation in mammalian cells by sequence-specific DNA binding protein. Science 245: 371–378

    Google Scholar 

  • Nakano M, Tobita T, Ando T (1976) Int J Pept Protein Res 8: 565–578

    Google Scholar 

  • Ratchrard C, Dahmus H, Dahmus ME (1979) Rapid visualization of protein bands in preparative SDS-polyacrylamide gels. Anal Biochem 93: 257–260

    Google Scholar 

  • Reith W, Barras E, Satola S, Kobr M, Reinhart D, Herrero Sanchez C, Mach B (1989) Cloning of the major histocompatibility complex class II promoter binding protein affected in a hereditary defect in class II gene regulation. Proc Natl Acad Sci USA 86: 4200–4204

    Google Scholar 

  • Seed B, Aruffo A (1987) Molecular cloning of the CD2 antigen, the T-cell erythrocyte receptor, by a rapid immunoselection procedure. Proc Natl Acad Sci USA 84: 3365–3369

    Google Scholar 

  • Singh H, LeBowitz JH, Baldwin AS, Sharp PA (1988) Molecular cloning of an enhancer binding protein: Isolation by screening of an expression library with a recognition site DNA. Cell 52: 415–423

    Google Scholar 

  • Struhl K (1989) Helix-turn-helix, zinc-finger, and leucine-zipper motifs for eukaryotic transcriptional regulatory proteins. TIBS 14: 137–140

    Google Scholar 

  • Vinson CR, LaMarco KL, Johnson PF, Landschulz WH, McKnight SL (1988) In situ detection of sequence-specific DNA binding activity specified by a recombinant bacteriophage. Genes Dev 2: 801–806

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Additional information

A. Bird

Rights and permissions

Reprints and permissions

About this article

Cite this article

Mattioni, T., Hume, C.R., Konigorski, S. et al. A cDNA clone for a novel nuclear protein with DNA binding activity. Chromosoma 101, 618–624 (1992). https://doi.org/10.1007/BF00360539

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF00360539

Keywords

Navigation