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Evolutionary Aspects of Grapevine Virology

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Grapevine Viruses: Molecular Biology, Diagnostics and Management

Abstract

Previous analyses have shown that plant viruses represent a host-specific subset of eukaryotic viruses enriched in positive-strand RNA species from diverse families and devoid of the bona fide double-stranded DNA species (Dolja VV, Koonin EV, Curr Opin Virol 1:322–331, 2011). In this article, we briefly discuss the grapevine virome and its relationships with the virome of flowering plants. We also provide a comparative phylogenomic analysis of the three families of viruses that are involved in the most widespread and economically important grapevine diseases in a search of commonalities and evolutionary forces that shaped the virome of this plant host.

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References

  • Aas, P.A., M. Otterlel, P.O. Falnes, C.B. Vagba, F. Skorpen, M. Akbari, O. Sundhelm, M. Bjeras, G. Slupphaug, E. Seeberg, and H.E. Krokan. 2003. Human and bacterial oxidative demethylases repair alkylation damage in both RNA and DNA. Nature 421: 859863.

    Article  Google Scholar 

  • Abou Ghanem-Sabanadzovic, N.A., S. Sabanadzovic, P. Gugerli, and A. Rowhani. 2012. Genome organization, serology and phylogeny of Grapevine leafroll-associated viruses 4 and 6: taxonomic implications. Virus Research 163: 120–128.

    Article  CAS  Google Scholar 

  • Agranovsky, A.A., D.E. Lesemann, E. Maiss, R. Hull, and J.G. Atabekov. 1995. "Rattlesnake" structure of a filamentous plant RNA virus built of two capsid proteins. Proceedings of the National Academy of Sciences of the United States of America 92: 2470–2473.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Al Rwahnih, M., S. Daubert, D. Golino, and A. Rowhani. 2009. Deep sequencing analysis of RNAs from a grapevine showing Syrah decline symptoms reveals a multiple virus infection that includes a novel virus. Virology doi:101016/j.virol.2009.02.028.

    Google Scholar 

  • Al Rwahnih, M., S. Daubert, J.R. Urbez-Torres, F. Cordero, and A. Rowhani. 2011. Deep sequencing evidence from single grapevine plants reveals a virome dominated by mycoviruses. Archives of Virology 156: 397–403.

    Article  PubMed  Google Scholar 

  • Al Rwahnih, M., V.V. Dolja, S. Daubert, E.V. Koonin, and A. Rowhani. 2012a. Genomic and biological analysis of Grapevine leafroll-associated virus 7 reveals a possible new genus within the family Closteroviridae. Virus Research 163: 302–309.

    Article  PubMed  Google Scholar 

  • Al Rwahnih, M., M.R. Sudarshana, J.K. Uyemoto, and A. Rowhani. 2012b. Complete genome sequence of a novel vitivirus isolated from grapevine. Journal of Virology 86: 9545. doi:10.1128/JVI.01444-12.

    Article  PubMed  PubMed Central  Google Scholar 

  • Al Rwahnih, M., A. Dave, M.M. Anderson, A. Rowhani, J.K. Uyemoto, and M.R. Sudarshana. 2013. Association of a DNA virus with grapevines affected by red blotch disease in California. Phytopathology 103: 1069–1076.

    Article  PubMed  Google Scholar 

  • Al Rwahnih, M., S. Daubert, D. Golino, C. Islas, and A. Rowhani. 2015. Comparison of Next-Generation Sequencing Versus Biological Indexing for the Optimal Detection of Viral Pathogens in Grapevine. Phytopathology 105: 758–763.

    Article  CAS  PubMed  Google Scholar 

  • Al Rwahnih, M., O.J. Alabi, N.M. Westrick, D. Golino, and A. Rowhani. 2016a. Near-complete genome sequence of Grapevine fabavirus, a novel putative member of the genus Fabavirus. Genome Announcements 4: e00703–e00716.

    Article  PubMed  PubMed Central  Google Scholar 

  • ———. 2016b. Description of a novel monopartite Geminivirus and its defective subviral genome in grapevine. Phytopathology PHYTO07160282R, [Epub ahead of print].

    Google Scholar 

  • Alzhanova, D.V., Y. Hagiwara, V.V. Peremyslov, and V.V. Dolja. 2000. Genetic analysis of the cell-to-cell movement of beet yellows closterovirus. Virology 268: 192–200.

    Article  CAS  PubMed  Google Scholar 

  • Alzhanova, D.V., A. Napuli, R. Creamer, and V.V. Dolja. 2001. Cell-to-cell movement and assembly of a plant closterovirus: roles for the capsid proteins and Hsp70 homolog. The EMBO Journal 20: 6997–7007.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Alzhanova, D.V., A.I. Prokhnevsky, V.V. Peremyslov, and V.V. Dolja. 2007. Virion tails of Beet yellows virus: Coordinated assembly by three structural proteins. Virology 359: 220–226.

    Article  CAS  PubMed  Google Scholar 

  • Aravind, L., and E.V. Koonin. 2001. The DNA-repair protein AlkB, EGL-9, an dleprecan define new families of 2-oxoglutarate- and iron-dependent dioxygenases. Genome Biology 2, research0007.1–0007.8.

    Google Scholar 

  • Bashir, N.S., and U. Melcher. 2012. Population genetic analysis of grapevine fanleaf virus. Archives of Virology 157: 1919–1929.

    Article  Google Scholar 

  • Bratlie, M.S., and F. Drablos. 2005. Bioinformatic mapping of AlkB homology domains in viruses. BMC Genomics 6: 1. doi:10.1186/1471-2164-6-1.

    Article  PubMed  PubMed Central  Google Scholar 

  • Castrovilli, S., V. Savino, M.A. Castellano, and D.J. Engelbrecht. 1985. Characterization of a grapevine isolate of Broad bean wilt virus. Phytopathologia Mediterranea 24: 35–40.

    Google Scholar 

  • Chiba, M., J.C. Reed, A.I. Prokhnevsky, E.J. Chapman, M. Mawassi, E.V. Koonin, J.C. Carrington, and V.V. Dolja. 2006. Diverse suppressors of RNA silencing enhance agroinfection by a viral replicon. Virology 346: 7–14.

    Article  CAS  PubMed  Google Scholar 

  • Coetzee, B., M.J. Freeborough, H.J. Maree, J.M. Celton, D.J. Rees, and J.T. Burger. 2010a. Deep sequencing analysis of viruses infecting grapevines: Virome of a vineyard. Virology 400: 157–163.

    Article  CAS  PubMed  Google Scholar 

  • Coetzee, B., H.J. Maree, D. Stephan, M.J. Freeborough, and J.T. Burger. 2010b. The first complete nucleotide sequence of a grapevine virus E variant. Archives of Virology 155: 1357–1360.

    Article  CAS  PubMed  Google Scholar 

  • de Miranda, J.R., R.S. Cornman, J.D. Evans, E. Semberg, N. Haddad, P. Neumann, and L. Gauthier. 2015. Genome Characterization, prevalence and distribution of a Macula-Like virus from Apis mellifera and Varroa destructor. Viruses 7: 3586–3602.

    Article  PubMed  PubMed Central  Google Scholar 

  • Diaz, A., and P. Ahlquist. 2012. Role of host reticulon proteins in rearranging membranes for positive-strand RNA virus replication. Current Opinion in Microbiology 15: 519–524.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Digiaro, M., E. Yahyaoui, G.P. Martelli, and T. Elbeaino. 2015. The sequencing of the complete genome of a Tomato black ring virus (TBRV) and of RNA2 of three Grapevine chrome mosaic virus (GCMV) isolates from grapevine reveals the possible recombinant origin of GCMV. Virus Genes 50: 165–171.

    Article  CAS  PubMed  Google Scholar 

  • Dolja, V.V. 2003. Beet yellows virus: The importance of being different. Molecular Plant Pathology 4: 91–98.

    Article  CAS  PubMed  Google Scholar 

  • Dolja, V.V., and E.V. Koonin. 2011. Common origins and host-dependent diversity of plant and animal viromes. Current Opinion in Virology 1: 322–331.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Dolja, V.V., J.F. Kreuze, and J.P. Valkonen. 2006. Comparative and functional genomics of closteroviruses. Virus Research 117: 38–51.

    Article  CAS  PubMed  Google Scholar 

  • Domingo, E., J. Sheldon, and C. Perales. 2012. Viral quasispecies evolution. Microbiology and Molecular Biology Reviews 76: 159–2016.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Dong, S.W., H.Y. Xiang, Q.X. Shang, D.W. Li, J.L. Yu, and C.G. Han. 2012. Complete genomic sequence analysis reveals a novel fabavirus infecting cucurbits in China. Archives of Virology 157: 597–600.

    Article  CAS  PubMed  Google Scholar 

  • Drummond, A.J., M.A. Suchard, D. Xie, and A. Rambaut. 2012. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Molecular Biology and Evolution 29: 1969–1973.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Elbeaino, T., M. Digiaro, S. Ghebremeskel, and G.P. Martelli. 2012. Grapevine deformation virus: completion of the sequence and evidence on its origin from recombination events between Grapevine fanleaf virus and Arabis mosaic virus. Virus Research 166: 136–140.

    Article  CAS  PubMed  Google Scholar 

  • Elbeaino, T., H. Kiyi, R. Boutarfa, A. Minafra, G.P. Martelli, and M. Digiaro. 2014. Phylogenetic analysis of the homing protein domain of Grapevine fanleaf virus (GFLV) isolates associated with “yellow mosaic” and “infectious malformation” syndromes in grapevines. Archives of Virology 159: 2757–2764.

    Article  CAS  PubMed  Google Scholar 

  • Ferriol, I., R.M. Ferrer, M. Luis-Arteaga, J. Guerri, M. Moreno, and L. Rubio. 2014. Genetic variability and evolution of broad bean wilt virus 1: role of recombination, selection and gene flow. Archives of Virology 159: 779–784.

    Article  CAS  PubMed  Google Scholar 

  • Foster, W.A. 1995. Mosquito sugar feeding and repreductive energetics. Annual Review of Entomology 40: 443–473.

    Article  CAS  PubMed  Google Scholar 

  • Gao, F., W. Lin, J. Shen, and S. Liao. 2016. Genetic diversity and molecular evolution of arabis mosaic virus based on the CP gene sequence. Archives of Viology 161: 1047–1051.

    Article  CAS  Google Scholar 

  • Ghabrial, S.A., J.R. Caston, D. Jiang, M.L. Nibert, and N. Suzuki. 2015. 50-Plus years of fungal viruses. Virology 479-480: 356–368.

    Article  CAS  PubMed  Google Scholar 

  • Giampetruzzi, A., V. Roumi, R. Roberto, U. Malossini, N. Yoshikawa, P. La Notte, F. Terlizzi, R. Credi, and P. Saldarelli. 2012. A new grapevine virus discovered by deep sequencing of virus- and viroid-derived small RNAs in Cv Pinot gris. Virus Research 163: 262–268.

    Article  CAS  PubMed  Google Scholar 

  • Goszczynski, D.E. 2015. Brief report of the construction of infectious DNA clones of South African genetic variants of grapevine virus A and grapevine virus B. SpringerPlus 4: 739.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Gouveia, P., and G. Nolasco. 2012. The p19.7 RNA silencing suppressor from Grapevine leafroll-associated virus 3 shows different levels of activity across phylogenetic groups. Virus Genes 45: 333–339.

    Article  CAS  PubMed  Google Scholar 

  • Halgren, A., I.E. Tzanetakis, and R.R. Martin. 2007. Identification, characterization, and detection of Black raspberry necrosis virus. Phytopathology 97: 44–50.

    Google Scholar 

  • International Committee on Taxonomy of Viruses. 2016. http://www.ictvonline.org/

  • Ito, T., and R. Nakaune. 2016. Molecular characterization of a novel putative ampelovirus tentatively named grapevine leafroll-associated virus 13. Archives of Virology 161: 2555–2559.

    Article  CAS  PubMed  Google Scholar 

  • Karasev, A.V. 2000. Genetic diversity and evolution of closteroviruses. Annual Review of Phytopathology 38: 293–324.

    Article  CAS  PubMed  Google Scholar 

  • King, A.M.Q., M.J. Adams, E.B. Carstens, and E.J. Lefkowitz. 2011. Virus Taxonomy: 9th Report of the International Committee on Taxonomy of Viruses. San Diego: Academic Press/Elsevier.

    Google Scholar 

  • Koonin, E.V., V.V. Dolja, and M. Krupovic. 2015. Origins and evolution of viruses of eukaryotes: The ultimate modularity. Virology 479-480: 2–25.

    Article  CAS  PubMed  Google Scholar 

  • Kumar, S., G. Stecher, and K. Tamura. 2016. MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets. Molecular Biology and Evolution 33: 1870–1874.

    Article  CAS  PubMed  Google Scholar 

  • Kurth, E.G., V.V. Peremyslov, A.I. Prokhnevsky, K.D. Kasschau, M. Miller, J.C. Carrington, and V.V. Dolja. 2012. Virus-derived gene expression and RNA interference vector fro grapevine. Journal of Virology 86: 6002–6009.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Lamprecht, R.L., H.J. Maree, D. Stephan, and J.T. Burger. 2012. Complete nucleotide sequence of a South African isolate of Grapevine fanleaf virus. Virus Genes 54: 406–410.

    Article  Google Scholar 

  • Le Gall, O., T. Candresse, and J. Dunez. 1995. Transfer of the 3′ non-translated region of Grapevine chrome mosaic virus RNA-1 by recombination to Tomato black ring virus RNA-2 in pseudorecombinant isolates. Journal of General Virology 76: 1285–1289.

    Article  PubMed  Google Scholar 

  • Lisa, V., and G. Boccardo. 1996. Fabaviruses: Brod bean wilt and allied viruses. In The Plant Viruses, Polyhedral Virions and Bipartite RNA Genomes, Vol, 5, ed. B.D. Harrison and A.F. Murant, 229–250. New York: Plenum Press.

    Google Scholar 

  • Liu, Y.-P., V.V. Peremyslov, V. Medina, and V.V. Dolja. 2009. Tandem leader proteases of Grapevine leafroll-associated virus-2: host-specific functions in the infection cycle. Virology 383: 291–299.

    Article  CAS  PubMed  Google Scholar 

  • Lopez-Fabuel, I., A. Olmos, A. Bassler, L. Dupuis-Maguiraga, L.B. Torres, E. Bertolini, and T. Wetzel. 2013. Molecular analysis of the genomic RNAs 1 and 2 of the first Arabis mosaic virus isolate detected in Spanish grapevines. Spanish Journal of Agricultural Research 11: 199–203.

    Article  Google Scholar 

  • Lu, R., A.S. Folimonov, M. Shintaku, W.X. Li, B.W. Falk, W.O. Dawson, and S.W. Ding. 2004. Three distinct suppressors of RNA silencing encoded by a 20-kb viral RNA genome. Proceedings of the National Academy of Sciences of the United States of America 101: 15742–15747.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Maree, H.J., R.P. Almeida, R. Bester, K.M. Chooi, D. Cohen, V.V. Dolja, M.F. Fuchs, D.A. Golino, A.E. Jooste, G.P. Martelli, R.A. Naidu, A. Rowhani, P. Saldarelli, and J.T. Burger. 2013. Grapevine leafroll-associated virus 3. Frontiers in Microbiology 4: 1–21.

    Article  Google Scholar 

  • Martelli, G.P. 2014. Directory of virus and virus-like diseases of the grapevine and their agents. Journal of Plant Pathology 96: 1–136.

    Google Scholar 

  • Martelli, G.P., M.J. Adams, J.F. Kreuze, and V.V. Dolja. 2007. Family Flexiviridae: A case study in virion and genome plasticity. Annual Review of Phytopathology 45: 73–100.

    Article  CAS  PubMed  Google Scholar 

  • Martelli, G.P., and Uyemoto J. K. 2011. Nematode-borne viruses of stone fruits. In: Hadidi, A., Barba, M., Candresse, T. Jelkmann W. Virus and virus-like diseases of pme and stone fruits, pp. 161–170, APS Press St. Paul

    Google Scholar 

  • Martelli, G.P., Ghanem-Sabanadzovic N. Abou, A.A. Agranovsky, Rwahnih M. Al, V.V. Dolja, C. Dovas, M. Fuchs, P. Gugerli, J.S. Hu, W. Jelkmann, N.I. Katis, V.I. Maliogka, M.J. Melzer, W. Menzel, A. Minafra, M.E. Rott, A. Rowhani, S. Sabanadzovic, and P. Saldarelli. 2012. Taxonomic revision of the family Closteroviridae with special reference to grapevine leafroll-associated members of the genus Ampelovirus and the putative species unassigned to the family. Journal of Plant Pathology 94: 7–19.

    Google Scholar 

  • Mayo, M.A., and D.J. Robinson. 1996. Nepoviruses: molecular biology and replication. In The Plant Viruses: Polyhedral Virions and Bipartite RNA Genomes, ed. B.D. Harrison and A.F. Murrant, vol. 5, 139–185. New York: Plenum Press.

    Chapter  Google Scholar 

  • Minafra, A., P. Saldarelli, F. Grieco, and G.P. Martelli. 1994. Nucleotide sequence of the 3′ terminal region of the RNA of two filamentous grapevine viruses. Archives of Virology 137: 249–261.

    Article  CAS  PubMed  Google Scholar 

  • Naidu, R.A., H.J. Maree, and J.T. Burger. 2015. Grapevine leafroll disease and associated viruses: a unique pathosystem. Annual Review of Phytopathology 53: 613–634.

    Article  CAS  PubMed  Google Scholar 

  • Nakaune, R., S. Toda, M. Mochizuki, and M. Nakano. 2008. Identification and characterization of a new vitivirus from grapevine. Archives of Virology 153: 1827–1832.

    Article  CAS  PubMed  Google Scholar 

  • Napuli, A.J., D.V. Alzhanova, C.E. Doneanu, D.F. Barofsky, E.V. Koonin, and V.V. Dolja. 2003. The 64-kDa capsid protein homolog of beet yellows virus is required for assembly of virion tails. Journal of Virology 77: 2377–2384.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Olivier, J.E., E. Vigne, and M. Fuchs. 2010. Genetic structure and molecular variability of Grapevine fanleaf virus populations. Virus Research 152: 30–40.

    Article  Google Scholar 

  • Pacifico, D., E. Stigliano, L. Sposito, P. Spinelli, G. Garfi, A.S. Gristina, I. Fontana, and F. Carimi. 2016. Survey of viral infections in spontaneous grapevine from natural environments in Sicily. European Journal of Plant Pathology 145: 189–197.

    Article  CAS  Google Scholar 

  • Peremyslov, V.V., I.A. Andreev, A.I. Prokhnevsky, G.H. Duncan, M.E. Taliansky, and V.V. Dolja. 2004. Complex molecular architecture of beet yellows virus particles. Proceedings of the National Academy of Sciences of the United States of America 101: 5030–5035.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Poojari, S., O.J. Alabi, V.Y. Fofanov, and R.A. Naidu. 2013. A leafhopper-transmissible DNA virus with novel evolutionary lineage in the family geminiviridae implicated in grapevine redleaf disease by next-generation sequencing. PloS One 8: e64194.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Rambaut A., T.T. Lam, L. Max Carvalho, and O.G. Pybus. 2016. Exploring the temporal structure of heterochronous sequences using TempEst (formerly Path-O-Gen). Virus Evolution 9: doi: http://dx.doi.org/10.1093/ve/vew0072.

  • Roossinck, M.J. 2016. Deep sequencing for discovery and evolutionary analysis of plant viruses. Virus Research. doi:10.1016/j.virusres. 2016.11.019. [Epub ahead of print].

  • Saldarelli, P., A. Minafra, and G.P. Martelli. 1996. The nucleotide sequence and genomic organization of grapevine virus B. Journal of General Virology 77: 2645–2652.

    Article  CAS  PubMed  Google Scholar 

  • Sanfaçon, H., J. Wellink, O. Le Gall, A. Karasev, R. van der Vlugt, and T. Wetzel. 2009. Secoviridae: a proposed family of plant viruses within the order Piconavirales that combines the families Sequiviridae and Comoviridae, the unassigned genera Cheravirus, and Sadwavirus, and the proposed genus Torradovirus. Archives of Virology 154: 899–907.

    Article  PubMed  Google Scholar 

  • Sanfaçon, H., T. Iwanami, A.V. Karasev, R. van der Vlugt, J. Wellink, T. Wetzel, and N. Yoshikawa. 2012. Family Secoviridae. In Virus taxonomy, Ninth report of the international committee on the taxonomy of viruses, ed. A.M.Q. King, M.J. Adams, E.B. Carstens, and E.J. Lefkowitz, 881–899.e11. Amsterdam: Elsevier/Academic Press.

    Google Scholar 

  • Satyanarayana, T., S. Gowda, M.A. Ayllon, and W.O. Dawson. 2004. Closterovirus bipolar virion: evidence for initiation of assembly by minor coat protein and its restriction to the genomic RNA 5′ region. Proceedings of the National Academy of Sciences of the United States of America 101: 799–804.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Seguin, J., R. Rajeswaran, N. Malpica-López, R.R. Martin, K. Kasschau, V.V. Dolja, P. Otten, L. Farinelli, and M.M. Pooggin. 2014. De novo reconstruction of consensus master genomes of plant RNA and DNA viruses from siRNAs. PloS One 9: e88515.

    Article  Google Scholar 

  • Sether, D.M., M.J. Melzer, W.B. Borth, and J.S. Hu. 2009. Genome organization and phylogenetic relationship of Pineapple mealybug wilt associated virus-3 with family Closteroviridae members. Virus Genes 38: 414–420.

    Article  CAS  PubMed  Google Scholar 

  • Shabalina, S.A., and E.V. Koonin. 2008. Origins and evolution of eukaryotic RNA interference. Trends in Ecology & Evolution 23: 578–587.

    Article  Google Scholar 

  • Sudarshana, M.R., K.L. Perry, and M.F. Fuchs. 2015. Grapevine red blotch-associated virus, an emerging threat to the grapevine industry. Phytopathology 105: 1026–1032.

    Article  PubMed  Google Scholar 

  • Susaimuthu, J., I.E. Tzanetakis, R.C. Gergerich, and R.R. Martin. 2007. A member of a new genus in the Potyviridae infets Rubus. Virus Research 131: 145–151.

    Article  PubMed  Google Scholar 

  • Thompson, J.R., M. Fuchs, and K.L. Perry. 2012. Genomic analysis of grapevine leafroll associated virus-5 and related viruses. Virus Research 163: 19–27.

    Article  CAS  PubMed  Google Scholar 

  • Thompson, J.R., N. Kamath, and K.L. Perry. 2014. An evolutionary analysis of the Secoviridae family of viruses. PloS One 9: e106305. doi:10.1371/journal. pone.0106305.

    Article  PubMed  PubMed Central  Google Scholar 

  • van den Born, E., M.V. Omelchenko, A. Bekkelund, V. Leihne, E.V. Koonin, V.V. Dolja, and P.O. Falnes. 2008. Viral AlkB proteins repair RNA damage by oxidative demethylation. Nucleic Acids Research 36: 5451–5461.

    Article  PubMed  PubMed Central  Google Scholar 

  • Vigne, E., M. Bergdoll, S. Guyader, and M. Fuchs. 2004. Multiple interspecies recombination events within isolates of grepevine fanaleaf virus forn a naturally infected vineyard in France: evidence for mixed infection and recombination. Journal of General Virology 85: 2435–2445.

    Article  CAS  PubMed  Google Scholar 

  • Vigne, E., A. Marmonier, and M. Fuchs. 2008. Multiple interspecies recombination events within RNA2 of grapevine fanleaf virus and arabis mosaic virus. Archives of Virology 153: 1771–1776.

    Article  CAS  PubMed  Google Scholar 

  • Walker, M., J. Chisholm, T. Wei, B. Ghoshal, H. Saeed, M. Rott, and H. Sanfaçon. 2015. Complete genome sequence of three Tomato ringspot virus isolates: evidence for reassortment and recombination. Archives of Virology 160: 543–548.

    Article  CAS  PubMed  Google Scholar 

  • Wang, L., X. Lv, Y. Zhai, S. Fu, D. Wang, S. Rayner, Q. Tang, and G. Liang. 2012. Genome characterization of a novel virus of the family Tymoviridae isolated from mosquitoes. PloS One 7 (7): e39845. doi:10.1371/journal.pone.0039845.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Weaver, S.C., and A.D.T. Barrett. 2004. Transmission cycles, host range, evolution and emergence of arboviral disease. Nature Reviews. Microbiology 2: 789–801.

    Article  CAS  PubMed  Google Scholar 

  • Zhang, Y., K. Singh, R. Kaur, and W. Qiu. 2011. Association of a novel DNA virus with the grapevine vein-clearing and vine decline syndrome. Phytopathology 101: 1081–1090.

    Article  CAS  PubMed  Google Scholar 

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Acknowledgments

G. P. Martelli is indebted to Drs. A. Minafra and B. Navarro-Ramirez for help with the evolutionary analysis and the construction of trees of members of the family Secoviridae. B. Meng would like to thank Clayton Moore for help with the phylogenetic analyses and trees of members of the family Betaflexiviridae.

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Correspondence to V. V. Dolja .

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Dolja, V.V., Meng, B., Martelli, G.P. (2017). Evolutionary Aspects of Grapevine Virology. In: Meng, B., Martelli, G., Golino, D., Fuchs, M. (eds) Grapevine Viruses: Molecular Biology, Diagnostics and Management. Springer, Cham. https://doi.org/10.1007/978-3-319-57706-7_32

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